BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00033569
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    72   6e-11
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    72   6e-11
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar...    65   8e-09
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    63   2e-08
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    57   1e-06

>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
 Frame = -3

Query: 376 FLDAAAQDKPP------------SHRFCFDRRYLDIPSVNQIIHTTWYLLQES--TPMFQ 239
           FLD    D  P            S  F FD R +DIP+  +I+ T+W   + S  TP   
Sbjct: 369 FLDFTGSDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTP--- 425

Query: 238 VTRHTQNCRLALLNASRSHNMNSGKAIKMIKERIERLQHQRGSRNWNEWEQLKVQLDE*Y 59
           +T    +CR A+     + N+NS + IK ++  + R        +     QL+  L + +
Sbjct: 426 ITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAF 485

Query: 58  KKEEIFWQQKSRIQWLQEG 2
             EEI+W+QKSR QW++EG
Sbjct: 486 SDEEIYWKQKSRNQWMKEG 504


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
 Frame = -3

Query: 376  FLDAAAQDKPP------------SHRFCFDRRYLDIPSVNQIIHTTWYLLQES--TPMFQ 239
            FLD    D  P            S  F FD R +DIP+  +I+ T+W   + S  TP   
Sbjct: 595  FLDFTGSDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTP--- 651

Query: 238  VTRHTQNCRLALLNASRSHNMNSGKAIKMIKERIERLQHQRGSRNWNEWEQLKVQLDE*Y 59
            +T    +CR A+     + N+NS + IK ++  + R        +     QL+  L + +
Sbjct: 652  ITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAF 711

Query: 58   KKEEIFWQQKSRIQWLQEG 2
              EEI+W+QKSR QW++EG
Sbjct: 712  SDEEIYWKQKSRNQWMKEG 730


>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 41/133 (30%), Positives = 66/133 (49%)
 Frame = -3

Query: 400 QSSNHSLLFLDAAAQDKPPSHRFCFDRRYLDIPSVNQIIHTTWYLLQESTPMFQVTRHTQ 221
           + S+H  L        K   + F +DR   D P ++++++ TW    +S P  +V     
Sbjct: 197 EGSDHRPLVTSFDHVQKKTKNIFRYDRTLKDNPEISKLMNETW----KSNPSAKVDYRLH 252

Query: 220 NCRLALLNASRSHNMNSGKAIKMIKERIERLQHQRGSRNWNEWEQLKVQLDE*YKKEEIF 41
            CR ALLN S+ H++NS K I  ++ ++E       +   +  + L   L   Y+KEE F
Sbjct: 253 LCRAALLNWSKEHHLNSQKEILSLRVQLEEALTDDAATQ-DSVDLLNQNLLLAYRKEETF 311

Query: 40  WQQKSRIQWLQEG 2
           W+Q+SR  WL  G
Sbjct: 312 WKQRSRNLWLALG 324


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 36/133 (27%), Positives = 68/133 (51%)
 Frame = -3

Query: 400 QSSNHSLLFLDAAAQDKPPSHRFCFDRRYLDIPSVNQIIHTTWYLLQESTPMFQVTRHTQ 221
           + S+H  L     A     S  F FDRR  +   +  ++   W L ++ + +++++R   
Sbjct: 162 EGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISR--- 218

Query: 220 NCRLALLNASRSHNMNSGKAIKMIKERIERLQHQRGSRNWNEWEQLKVQLDE*YKKEEIF 41
            CR +++  ++  N NS KAIK  ++ +E         + +    +  +L+  Y++EE+F
Sbjct: 219 -CRQSIIKWTKEQNSNSAKAIKKAQQALESAL-SADIPDPSLIGSITQELEAAYRQEELF 276

Query: 40  WQQKSRIQWLQEG 2
           W+Q SR+QWL  G
Sbjct: 277 WKQWSRVQWLNSG 289


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/131 (25%), Positives = 55/131 (41%)
 Frame = -3

Query: 394 SNHSLLFLDAAAQDKPPSHRFCFDRRYLDIPSVNQIIHTTWYLLQESTPMFQVTRHTQNC 215
           S+H  LFL     +      F FD+R L++P     +   W           +    + C
Sbjct: 601 SDHKPLFLSLEKTETRKMRPFRFDKRLLEVPHFKTYVKAGWNKAINGQRK-HLPDQVRTC 659

Query: 214 RLALLNASRSHNMNSGKAIKMIKERIERLQHQRGSRNWNEWEQLKVQLDE*YKKEEIFWQ 35
           R A+       N+NS   I  ++  +++               ++ +L   Y+ EE +WQ
Sbjct: 660 RQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQ 719

Query: 34  QKSRIQWLQEG 2
           QKSR QW++EG
Sbjct: 720 QKSRNQWMKEG 730