BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00033537
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    84   1e-14
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...    84   1e-14
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    81   8e-14
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    80   1e-13
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    78   9e-13

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/131 (29%), Positives = 71/131 (54%)
 Frame = -3

Query: 424  DRLVWNFSQNGNYTVKSGQKLAMQLVQEKRQEAEASTASQEQGRPWTVLWQLTVKKKISI 245
            D+ +W  S+NG +TV+S      +L+++++     ST+     + W  +W+  +  K+ +
Sbjct: 1010 DQWMWMMSKNGQFTVRSAYY--HELLEDRK--TGPSTSRGPNLKLWQKIWKAKIPPKVKL 1065

Query: 244  FFWKCLHKAIPVGAELVKRRMLVDPICKQCGEHVETLEQLFFKCDKAQKIWSIAPVKWGD 65
            F WK +H  + V   + KR M +D  C +CGE  ET E L + CD++ + W I+P++   
Sbjct: 1066 FSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHT 1125

Query: 64   RFLETGCIKDW 32
              +E G  + W
Sbjct: 1126 GNIEAGSFRIW 1136


>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/117 (32%), Positives = 64/117 (54%)
 Frame = -3

Query: 424 DRLVWNFSQNGNYTVKSGQKLAMQLVQEKRQEAEASTASQEQGRPWTVLWQLTVKKKISI 245
           D + W ++ +GNY+VKSG  L  +L Q++     +      Q   +T +W+     KI  
Sbjct: 454 DAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQ-TVFTNIWKQNAPPKIKH 512

Query: 244 FFWKCLHKAIPVGAELVKRRMLVDPICKQCGEHVETLEQLFFKCDKAQKIWSIAPVK 74
           F+W+  H A+P    L +RR++ D  C++CGE  E +  L F+C  +++IW  A +K
Sbjct: 513 FWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIK 569


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
 Frame = -3

Query: 424  DRLVWNFSQNGNYTVKSGQKLAMQ-----LVQEKRQEAEASTASQEQGRPWTVLWQLTVK 260
            D  VW  S++G Y+VKSG  LA Q     L++E R +   +   ++       +W     
Sbjct: 1002 DFWVWLHSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTNGLKEK-------IWSTLTS 1054

Query: 259  KKISIFFWKCLHKAIPVGAELVKRRMLVDPICKQCGEHVETLEQLFFKCDKAQKIWSIAP 80
             KI +F W+ L  A+PV  ++++R M +DP C+ CGE  E++  + F C  A+++W+++ 
Sbjct: 1055 PKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSG 1114

Query: 79   V 77
            V
Sbjct: 1115 V 1115


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 36/116 (31%), Positives = 64/116 (55%)
 Frame = -3

Query: 424  DRLVWNFSQNGNYTVKSGQKLAMQLVQEKRQEAEASTASQEQGRPWTVLWQLTVKKKISI 245
            DR  W +S++G+Y+VKSG  +  +++ ++    E    S +    +  +W+L V  KI  
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDP--IFQQIWKLDVPPKIHH 1065

Query: 244  FFWKCLHKAIPVGAELVKRRMLVDPICKQCGEHVETLEQLFFKCDKAQKIWSIAPV 77
            F W+C++  + V + L  R +  +  C +C  H ET+  L FKC  A+  W+I+P+
Sbjct: 1066 FLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPL 1121


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
 Frame = -3

Query: 424 DRLVWNFSQNGNYTVKSGQKLAMQLVQEKRQEAEASTASQEQGRPWTVLWQLTVKKKISI 245
           D   W+++ +G+YTVKSG  +  Q++ ++    E S  S      +  +W+     KI  
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNP--IYQKIWKSQTSPKIQH 268

Query: 244 FFWKCLHKAIPVGAELVKRRMLVDPICKQCGEHVETLEQLFFKCDKAQKIWSIA--PVKW 71
           F WKCL  ++PV   L  R +  +  C +C    ET+  L FKC  A+  W+I+  P+  
Sbjct: 269 FLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPL 328

Query: 70  GDRFLETGCIKDWW 29
           G  + ++  +  +W
Sbjct: 329 GGEWADSIYVNLYW 342