BLASTX nr result
ID: Cephaelis21_contig00030334
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00030334
(1002 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras... 542 e-152
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras... 540 e-151
emb|CBI36559.3| unnamed protein product [Vitis vinifera] 526 e-147
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 526 e-147
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2... 520 e-145
>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 3; Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase
[Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 977
Score = 542 bits (1396), Expect = e-152
Identities = 249/334 (74%), Positives = 290/334 (86%)
Frame = +1
Query: 1 PAFRHTMRIATKKSGQNPVKRYGVIVCDPVIRSGLDRSVKHVMVQYVPMLVPPKKWKGYD 180
PAFRH RIAT+ G++ VK+YGVI CDP++ +G+DR+VK +M+ YVPMLVPPKKW+GYD
Sbjct: 361 PAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYD 420
Query: 181 KGGYLFLPSYLIRSHGSRQQQDAIKSSPMKQMQNVYEALDTMGNIKWRVNRRILNVVESL 360
KGGYLFLPSYL+R+HGSR+QQDA++S P KQMQ VYEALDT+G+ KWRVN+RIL+VVES+
Sbjct: 421 KGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESI 480
Query: 361 WAGGGNVAGLVNRKDVPIPEVQSDTAEEXXXXXXXXXXXXXXXXELHSLRCDTELKLSVA 540
WAGGGN+AGLV+RKDVPIPE+ SD E ELHS RCDTELKLSVA
Sbjct: 481 WAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVA 540
Query: 541 RKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGLLEFAEGRPLGKSGFYWLKIHI 720
RK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLGKSG WLKIH+
Sbjct: 541 RKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHL 600
Query: 721 ANLYGGSVKKLSHDQRLAFVDNHLNEVMDSADNPLNGNRWWLKAEDPFQCLAACVNLSEA 900
A+LY G ++KL +D RLAFV+NH+++++DSA+NPLNGNRWWL AEDPFQCLAAC+NLSEA
Sbjct: 601 ASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEA 660
Query: 901 LKSSSPYTVISHLPIHQDGSCNGLQHYAALGNDS 1002
LKSSSP+TV SHLPIHQDGSCNGLQHYAALG DS
Sbjct: 661 LKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDS 694
>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 3B; Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
[Nicotiana tabacum]
Length = 977
Score = 540 bits (1392), Expect = e-151
Identities = 251/335 (74%), Positives = 290/335 (86%), Gaps = 1/335 (0%)
Frame = +1
Query: 1 PAFRHTMRIATKKSGQNPVKRYGVIVCDPVIRSGLDRSVKHVMVQYVPMLVPPKKWKGYD 180
PAFRH +IAT+ G+N VK+YGVI CDP++ +G+DR+VK +M+ YVPMLVPPKKW+GYD
Sbjct: 360 PAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYD 419
Query: 181 KGGYLFLPSYLIRSHGSRQQQDAIKSSPMKQMQNVYEALDTMGNIKWRVNRRILNVVESL 360
KGGYLFLPSYL+R+HGSR+QQDA++ P KQMQ VYEALDT+G+ KWRVN+RILNVVES+
Sbjct: 420 KGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESI 479
Query: 361 WAGGGNVAGLVNRKDVPIPEVQ-SDTAEEXXXXXXXXXXXXXXXXELHSLRCDTELKLSV 537
WAGGGN+AGLV+RKDVPIPE+ SD E ELHS RCDTELKLSV
Sbjct: 480 WAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSV 539
Query: 538 ARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGLLEFAEGRPLGKSGFYWLKIH 717
ARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLGKSG WLKIH
Sbjct: 540 ARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIH 599
Query: 718 IANLYGGSVKKLSHDQRLAFVDNHLNEVMDSADNPLNGNRWWLKAEDPFQCLAACVNLSE 897
+A+LY G V+KL +D RLAFV+NH+++++DSA+NPLNGNRWWL AEDPFQCLAAC+NLSE
Sbjct: 600 LASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSE 659
Query: 898 ALKSSSPYTVISHLPIHQDGSCNGLQHYAALGNDS 1002
ALKSSSP+TVISHLPIHQDGSCNGLQHYAALG DS
Sbjct: 660 ALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDS 694
>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 526 bits (1356), Expect = e-147
Identities = 244/335 (72%), Positives = 285/335 (85%), Gaps = 1/335 (0%)
Frame = +1
Query: 1 PAFRHTMRIATKKSGQNPVKRYGVIVCDPVIRSGLDRSVKHVMVQYVPMLVPPKKWKGYD 180
PAFRHT + TK+SGQ ++YGVI CDP++ GLDR+ KH+++ YVPML+PPKKWKGYD
Sbjct: 191 PAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYD 250
Query: 181 KGGYLFLPSYLIRSHGSRQQQDAIKSSPMKQMQNVYEALDTMGNIKWRVNRRILNVVESL 360
KGGYLFLPSY++R+HGSR+QQDA+KS P +Q+Q V+EALDT+GN KWR+NRR+L+VVES+
Sbjct: 251 KGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESI 310
Query: 361 WAGGGNVAGLVNRKDVPIPEVQS-DTAEEXXXXXXXXXXXXXXXXELHSLRCDTELKLSV 537
WA GGN+ GLV+R++VP+PE S + E E HSLRCDTE+KLSV
Sbjct: 311 WARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSV 370
Query: 538 ARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGLLEFAEGRPLGKSGFYWLKIH 717
ARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLGKSG WLKI
Sbjct: 371 ARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQ 430
Query: 718 IANLYGGSVKKLSHDQRLAFVDNHLNEVMDSADNPLNGNRWWLKAEDPFQCLAACVNLSE 897
+ANLY G V+KLS+D RLAFVDNHL++V DSADNPLNGNRWWL AEDPFQCLAAC+NLSE
Sbjct: 431 LANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSE 490
Query: 898 ALKSSSPYTVISHLPIHQDGSCNGLQHYAALGNDS 1002
AL+SSSP+TVISHLPIHQDGSCNGLQHYAALG +S
Sbjct: 491 ALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNS 525
>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 526 bits (1356), Expect = e-147
Identities = 244/335 (72%), Positives = 285/335 (85%), Gaps = 1/335 (0%)
Frame = +1
Query: 1 PAFRHTMRIATKKSGQNPVKRYGVIVCDPVIRSGLDRSVKHVMVQYVPMLVPPKKWKGYD 180
PAFRHT + TK+SGQ ++YGVI CDP++ GLDR+ KH+++ YVPML+PPKKWKGYD
Sbjct: 362 PAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYD 421
Query: 181 KGGYLFLPSYLIRSHGSRQQQDAIKSSPMKQMQNVYEALDTMGNIKWRVNRRILNVVESL 360
KGGYLFLPSY++R+HGSR+QQDA+KS P +Q+Q V+EALDT+GN KWR+NRR+L+VVES+
Sbjct: 422 KGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESI 481
Query: 361 WAGGGNVAGLVNRKDVPIPEVQS-DTAEEXXXXXXXXXXXXXXXXELHSLRCDTELKLSV 537
WA GGN+ GLV+R++VP+PE S + E E HSLRCDTE+KLSV
Sbjct: 482 WARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSV 541
Query: 538 ARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGLLEFAEGRPLGKSGFYWLKIH 717
ARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLGKSG WLKI
Sbjct: 542 ARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQ 601
Query: 718 IANLYGGSVKKLSHDQRLAFVDNHLNEVMDSADNPLNGNRWWLKAEDPFQCLAACVNLSE 897
+ANLY G V+KLS+D RLAFVDNHL++V DSADNPLNGNRWWL AEDPFQCLAAC+NLSE
Sbjct: 602 LANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSE 661
Query: 898 ALKSSSPYTVISHLPIHQDGSCNGLQHYAALGNDS 1002
AL+SSSP+TVISHLPIHQDGSCNGLQHYAALG +S
Sbjct: 662 ALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNS 696
>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
predicted protein [Populus trichocarpa]
Length = 982
Score = 520 bits (1340), Expect = e-145
Identities = 243/335 (72%), Positives = 278/335 (82%), Gaps = 1/335 (0%)
Frame = +1
Query: 1 PAFRHTMRIATKKSGQNPVKRYGVIVCDPVIRSGLDRSVKHVMVQYVPMLVPPKKWKGYD 180
PAFRH + TK GQ VK+YGVI CDP+I +GLD + KH+++ Y PMLVPPKKW+GYD
Sbjct: 365 PAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYD 424
Query: 181 KGGYLFLPSYLIRSHGSRQQQDAIKSSPMKQMQNVYEALDTMGNIKWRVNRRILNVVESL 360
KGG+LFLPSY++R+HGSRQQQDA++S P KQMQ V+EALDT+GN KWRVN ++L+VVE +
Sbjct: 425 KGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERI 484
Query: 361 WAGGGNVAGLVNRKDVPIPE-VQSDTAEEXXXXXXXXXXXXXXXXELHSLRCDTELKLSV 537
WA GGN AGLVNR D+PIPE + SD E E HS RCDTELKLSV
Sbjct: 485 WASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSV 544
Query: 538 ARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGLLEFAEGRPLGKSGFYWLKIH 717
ARK+KDEEGFYYPHNLDFRGRAYPMH HL HLSSDLCRG+LEFAEGRPLGKSG WLKIH
Sbjct: 545 ARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIH 604
Query: 718 IANLYGGSVKKLSHDQRLAFVDNHLNEVMDSADNPLNGNRWWLKAEDPFQCLAACVNLSE 897
+ANLY G V+KLSHD RLAFV+NHL+E+ DSA+NP+NG RWWL AEDPFQCLAAC+NLSE
Sbjct: 605 LANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSE 664
Query: 898 ALKSSSPYTVISHLPIHQDGSCNGLQHYAALGNDS 1002
ALKS+SP+TVISHLPIHQDGSCNGLQHYAALG DS
Sbjct: 665 ALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDS 699