BLASTX nr result

ID: Cephaelis21_contig00027986 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00027986
         (603 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310906.1| high mobility group family [Populus trichoca...   122   4e-26
ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus...   115   8e-24
ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-l...   115   8e-24
ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group] g...   111   1e-22
gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indi...   111   1e-22

>ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
           gi|118483462|gb|ABK93630.1| unknown [Populus
           trichocarpa] gi|222853809|gb|EEE91356.1| high mobility
           group family [Populus trichocarpa]
          Length = 201

 Score =  122 bits (307), Expect = 4e-26
 Identities = 73/139 (52%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
 Frame = -1

Query: 402 RKRVEVESKDS---ASTSASLKRAKDGSAFAKCGECGKDVAVALISMHNCGLDAQIKMNL 232
           RKRVE ES D    A+T+ SL RAKDGSAF KC EC KDV VALIS H+C LDA+IKMNL
Sbjct: 3   RKRVEAESTDGSVDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMNL 62

Query: 231 EAQV---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPPTAFFIFMEDFRKS 61
           EAQV                                       KRPPTAFF+FM+DFRK 
Sbjct: 63  EAQVVEKPTEAKQKPAERKKGSSTEPKLKKAKKEKKGRDPNAPKRPPTAFFLFMDDFRKE 122

Query: 60  FKEENPDCKSVSVVAKEGG 4
           +KE NPD K V  VAKEGG
Sbjct: 123 YKEANPDSKDVKKVAKEGG 141


>ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
           gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B,
           putative [Ricinus communis]
          Length = 196

 Score =  115 bits (287), Expect = 8e-24
 Identities = 67/136 (49%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
 Frame = -1

Query: 402 RKRVEVESKDSASTSASLKRAKDGSAFAKCGECGKDVAVALISMHNCGLDAQIKMNLEAQ 223
           RKRVE E  D+A+ + S+ R KDGSAFA+C EC KDV VALISMH+C L+A+IKMNLEAQ
Sbjct: 3   RKRVEAE--DTATAANSMVRGKDGSAFARCDECKKDVPVALISMHSCSLEARIKMNLEAQ 60

Query: 222 V---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPPTAFFIFMEDFRKSFKE 52
           +                                       KRPPTAFFIF+++FRK+FKE
Sbjct: 61  IVEKPAETTKKPAERKKPTSTEPKAKKAKKDKKPNNPNKPKRPPTAFFIFLDEFRKTFKE 120

Query: 51  ENPDCKSVSVVAKEGG 4
            NPD K V  VAKE G
Sbjct: 121 ANPDSKDVKRVAKEAG 136


>ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
           gi|147815109|emb|CAN61363.1| hypothetical protein
           VITISV_034306 [Vitis vinifera]
           gi|297742725|emb|CBI35359.3| unnamed protein product
           [Vitis vinifera]
          Length = 190

 Score =  115 bits (287), Expect = 8e-24
 Identities = 67/136 (49%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
 Frame = -1

Query: 402 RKRVEVESKDSASTSASLKRAKDGSAFAKCGECGKDVAVALISMHNCGLDAQIKMNLEAQ 223
           RKRVE E+       +SLKRA+DGSAF +C EC KDV V LI MH+C L+A+IK+NLEAQ
Sbjct: 7   RKRVEAET-------SSLKRARDGSAFIRCEECKKDVPVVLIDMHSCSLEAKIKLNLEAQ 59

Query: 222 V---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPPTAFFIFMEDFRKSFKE 52
           V                                       KRPPTAFF+FM+DFRK +KE
Sbjct: 60  VVEKVTDVKKKPAEKKNATTTEPKPKKSRRLRKVKDPNMPKRPPTAFFLFMDDFRKEYKE 119

Query: 51  ENPDCKSVSVVAKEGG 4
            NPD K+VSVVAKEGG
Sbjct: 120 SNPDSKNVSVVAKEGG 135


>ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
           gi|38637289|dbj|BAD03552.1| putative HMG type
           nucleosome/chromatin assembly factor D [Oryza sativa
           Japonica Group] gi|113622727|dbj|BAF22672.1|
           Os08g0101100 [Oryza sativa Japonica Group]
           gi|125601889|gb|EAZ41214.1| hypothetical protein
           OsJ_25719 [Oryza sativa Japonica Group]
           gi|213959174|gb|ACJ54921.1| HMG type
           nucleosome/chromatin assembly factor [Oryza sativa
           Japonica Group] gi|215697671|dbj|BAG91665.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 203

 Score =  111 bits (277), Expect = 1e-22
 Identities = 66/135 (48%), Positives = 77/135 (57%)
 Frame = -1

Query: 408 RVRKRVEVESKDSASTSASLKRAKDGSAFAKCGECGKDVAVALISMHNCGLDAQIKMNLE 229
           R RKRVE      A+ SA LKRA+DGSAF +C  CGK V+V LI MHNC LD +I+++LE
Sbjct: 8   RTRKRVE------ATDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKIRISLE 61

Query: 228 AQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPPTAFFIFMEDFRKSFKEE 49
           AQV                                    KRPPTAFF+FM DFRK +K E
Sbjct: 62  AQV--------VEQAVEVAASKKKSGKNNNNNGEGAKKGKRPPTAFFLFMSDFRKEYKAE 113

Query: 48  NPDCKSVSVVAKEGG 4
           +PD KSVS VAKEGG
Sbjct: 114 HPDNKSVSAVAKEGG 128


>gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
           gi|125559834|gb|EAZ05282.1| hypothetical protein
           OsI_27485 [Oryza sativa Indica Group]
          Length = 204

 Score =  111 bits (277), Expect = 1e-22
 Identities = 66/135 (48%), Positives = 77/135 (57%)
 Frame = -1

Query: 408 RVRKRVEVESKDSASTSASLKRAKDGSAFAKCGECGKDVAVALISMHNCGLDAQIKMNLE 229
           R RKRVE      A+ SA LKRA+DGSAF +C  CGK V+V LI MHNC LD +I+++LE
Sbjct: 8   RTRKRVE------ATDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKIRISLE 61

Query: 228 AQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPPTAFFIFMEDFRKSFKEE 49
           AQV                                    KRPPTAFF+FM DFRK +K E
Sbjct: 62  AQV--------VEQAVEVAASKKKSGKNNNNNGEGAKKGKRPPTAFFLFMSDFRKEYKAE 113

Query: 48  NPDCKSVSVVAKEGG 4
           +PD KSVS VAKEGG
Sbjct: 114 HPDNKSVSAVAKEGG 128


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