BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00024814
         (872 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Popu...   154   3e-35
ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arab...   147   4e-33
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            147   4e-33
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              145   1e-32
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   135   2e-29

>ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Populus trichocarpa]
           gi|222852928|gb|EEE90475.1| hypothetical protein
           POPTRDRAFT_562704 [Populus trichocarpa]
          Length = 305

 Score =  154 bits (388), Expect = 3e-35
 Identities = 107/305 (35%), Positives = 157/305 (51%), Gaps = 15/305 (4%)
 Frame = +2

Query: 2   RPPDFQARQKLAEAGEETALEVLRTIYSATTIRTLNGYIVYLIKQKFQSPLKRTXXXXXX 181
           RP +   R  LA  GEE AL +L  I      ++ +G++++L KQ F   +  +      
Sbjct: 30  RPLETNTRLTLASLGEEVALNILWRISGQEIRKSFDGFVLHLAKQ-FSPNINASSSSPNI 88

Query: 182 XXXXXXXXQIIQNGFGVGAVRYYPIFQPILNNGTNPDAQCSGHHKRHVETSSNLEIEMPN 361
                   Q  QN   +   R       ++N+ ++  AQ          +  +L++E  +
Sbjct: 89  HSSLSPSPQQPQNRSPITTTRL------LMNSQSDSGAQ----------SPISLKLEGSS 132

Query: 362 KICRQLRFGDEPQITAVKSPQSFSYQATVFSRELEFRREFLIYNYIGGKKLEEVVGDDDA 541
            +  Q + G+E          S + Q  V   ELEFR+ FLI +Y+GGK LEEVV     
Sbjct: 133 TMDSQRQRGNE----------STTSQHLVALGELEFRKAFLILSYLGGKNLEEVVS---V 179

Query: 542 DEILNMKDITMDAFESRIWNAYG--RKYCAPEDRRQSTDWYSGKTYLYYCSISQDGHYRF 715
           D+I   KD+ M  FES+IW A+G  R Y   EDR +  DW SGKT++Y+C +  DG YRF
Sbjct: 180 DQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRF 239

Query: 716 KGPCLSTATTHLQKTLGDDNVLIVKFVDVN------TSCIE-------RILKEGILIGLR 856
           KGP LS     LQ+TLGDDN+L+VKF +V       +S ++       ++L+EGI +GLR
Sbjct: 240 KGPYLSKQRNVLQRTLGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLR 299

Query: 857 RFHFF 871
            + FF
Sbjct: 300 CYRFF 304


>ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
           gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
           Full=Probable RNA-dependent RNA polymerase 3;
           Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
           3 gi|330251848|gb|AEC06942.1| RNA-dependent RNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 992

 Score =  147 bits (370), Expect = 4e-33
 Identities = 98/301 (32%), Positives = 147/301 (48%), Gaps = 12/301 (3%)
 Frame = +2

Query: 5   PPDFQARQKLAEAGEETALEVLRTIYSATTIRTLNGYIVYLIKQKFQSPLKRTXXXXXXX 184
           P   + R+KL+   EE ALE LR +++   ++TL+G I+Y +K                 
Sbjct: 37  PISVETRRKLSSISEELALETLRKVFNKPYLKTLDGLIMYFVKGTVTVD----------- 85

Query: 185 XXXXXXXQIIQNGFGVGAVRYYPIFQPILNNGTNPDAQCSGHHKRHVETSSNLEIEMPNK 364
                           G+ R  P   P+ +  T     C        + S +LE   P  
Sbjct: 86  ----------------GSPRLSPGESPVQSPRTPAKKSCRASQ----DVSLDLETPSPKF 125

Query: 365 ICRQLRFGDE--PQITAVKSPQSFSYQATVFSRELEFRREFLIYNYIGGKKL-EEVVGDD 535
           + R+   G +  P + A+               ELEF++ FL+ +YIGG+ L EEV+   
Sbjct: 126 MKREENGGSKYIPPLLALG--------------ELEFKKAFLLLSYIGGESLVEEVIS-- 169

Query: 536 DADEILNMKDITMDAFESRIWNAYGRKYCAPEDRRQSTDWYSGKTYLYYCSISQDGHYRF 715
             D+I   KD+ M ++E+ +WN  G++YC+P++RR+  +  SG T+ Y C ++ DG Y+F
Sbjct: 170 -GDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKF 228

Query: 716 KGPCLSTATTHLQKTLGDDNVLIVKF---VDVNTSC------IERILKEGILIGLRRFHF 868
           KG  L    THL K LGDDNVL VKF   + V T C       + I K GI++GLRR+ F
Sbjct: 229 KGHLLENTGTHLHKVLGDDNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRF 288

Query: 869 F 871
           F
Sbjct: 289 F 289


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  147 bits (370), Expect = 4e-33
 Identities = 98/301 (32%), Positives = 147/301 (48%), Gaps = 12/301 (3%)
 Frame = +2

Query: 5   PPDFQARQKLAEAGEETALEVLRTIYSATTIRTLNGYIVYLIKQKFQSPLKRTXXXXXXX 184
           P   + R+KL+   EE ALE LR +++   ++TL+G I+Y +K                 
Sbjct: 37  PISVETRRKLSSISEELALETLRKVFNKPYLKTLDGLIMYFVKGTVTVD----------- 85

Query: 185 XXXXXXXQIIQNGFGVGAVRYYPIFQPILNNGTNPDAQCSGHHKRHVETSSNLEIEMPNK 364
                           G+ R  P   P+ +  T     C        + S +LE   P  
Sbjct: 86  ----------------GSPRLSPGESPVQSPRTPAKKSCRASQ----DVSLDLETPSPKF 125

Query: 365 ICRQLRFGDE--PQITAVKSPQSFSYQATVFSRELEFRREFLIYNYIGGKKL-EEVVGDD 535
           + R+   G +  P + A+               ELEF++ FL+ +YIGG+ L EEV+   
Sbjct: 126 MKREENGGSKYIPPLLALG--------------ELEFKKAFLLLSYIGGESLVEEVIS-- 169

Query: 536 DADEILNMKDITMDAFESRIWNAYGRKYCAPEDRRQSTDWYSGKTYLYYCSISQDGHYRF 715
             D+I   KD+ M ++E+ +WN  G++YC+P++RR+  +  SG T+ Y C ++ DG Y+F
Sbjct: 170 -GDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKF 228

Query: 716 KGPCLSTATTHLQKTLGDDNVLIVKF---VDVNTSC------IERILKEGILIGLRRFHF 868
           KG  L    THL K LGDDNVL VKF   + V T C       + I K GI++GLRR+ F
Sbjct: 229 KGHLLENTGTHLHKVLGDDNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRF 288

Query: 869 F 871
           F
Sbjct: 289 F 289


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  145 bits (366), Expect = 1e-32
 Identities = 74/171 (43%), Positives = 107/171 (62%), Gaps = 12/171 (7%)
 Frame = +2

Query: 395 PQITAVKSPQSFSYQATVFSRELEFRREFLIYNYIGGKKLEEVVGDDDADEILNMKDITM 574
           P  T  K+ +  S    V   ELEFR+ FLI +YIG K+ E+++    A+EIL +K++ M
Sbjct: 86  PSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLS---AEEILKLKNLPM 142

Query: 575 DAFESRIWNAYGRKYCAPEDRRQSTDWYSGKTYLYYCSISQDGHYRFKGPCLSTATTHLQ 754
             FE+ +WN  GRK+   EDR++S DW S KT++Y+C +S DG YRFKGP L+   THLQ
Sbjct: 143 GVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQ 202

Query: 755 KTLGDDNVLIVKFVDVNT------------SCIERILKEGILIGLRRFHFF 871
           + LGD+N+L+VKF +  T            +   +I +EGI +GLR++ FF
Sbjct: 203 RVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFF 253


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
           vinifera]
          Length = 943

 Score =  135 bits (339), Expect = 2e-29
 Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 20/179 (11%)
 Frame = +2

Query: 395 PQITAVKSPQSFSYQATVFSRELEFRREFLIYNYIGGKKLEEVVGDDDADEILNMKDITM 574
           P  T  K+ +  S    V   ELEFR+ FLI +YIG  + E+++    A+EIL +K++ M
Sbjct: 86  PSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLS---AEEILKLKNLPM 142

Query: 575 DAFESRIWNAYGRKYCAPEDRRQSTDWYSGKTYLYYCSISQDGHYRFK--------GPCL 730
             FE+ +WN  GRK+   EDR++S DW S KT++Y+C +S DG YRFK        GP L
Sbjct: 143 GVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYL 202

Query: 731 STATTHLQKTLGDDNVLIVKFVDVNT------------SCIERILKEGILIGLRRFHFF 871
           +   THLQ+ LGD+N+L+VKF +  T            +   +I +EGI +GLR++ FF
Sbjct: 203 NKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFF 261