BLASTX nr result
ID: Cephaelis21_contig00024743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00024743
(468 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX95295.1| Reverse transcriptase (RNA-dependent DNA polymera... 64 2e-23
gb|AAY99339.1| pol-polyprotein [Silene latifolia] 59 3e-23
gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subc... 61 7e-22
gb|AAT77305.1| putative polyprotein [Oryza sativa Japonica Group] 62 9e-22
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi... 61 1e-21
>gb|AAX95295.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|108864239|gb|ABA92634.2| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1146
Score = 64.3 bits (155), Expect(3) = 2e-23
Identities = 29/58 (50%), Positives = 45/58 (77%)
Frame = -2
Query: 392 ILSQDCIKANPEKVDTLLNMTPPRTIKEIQGLNSQLVALSKFLSKSAQRFLPFLQILK 219
+LS+ I+ANPEK+D + M PP +++E+Q L ++VALS+FLSK+A+R LPF + L+
Sbjct: 607 LLSKRGIEANPEKIDAIQQMKPPSSVREVQKLAGRIVALSRFLSKAAERGLPFFKTLR 664
Score = 54.3 bits (129), Expect(3) = 2e-23
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = -3
Query: 184 PEAENAFQELKTHLFELPTLIFPVPGETLHLYLAISTETLSSVLIKNDNST*RSIYFV 11
PE + AF ELK +L PTLI P PG L LYLA S +S+ L++ +S +SIYFV
Sbjct: 673 PECQAAFDELKQYLQNPPTLISPAPGNELLLYLAASPVPVSAALVQERDSGQKSIYFV 730
Score = 35.4 bits (80), Expect(3) = 2e-23
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 465 IRRVNMKLNPKKCTFGVKKEKFLGYIISR 379
+ MKLNP+KC F V+ K LG+++S+
Sbjct: 582 LHAAGMKLNPEKCVFSVRAGKLLGFLLSK 610
>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
Length = 1307
Score = 58.5 bits (140), Expect(3) = 3e-23
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = -3
Query: 181 EAENAFQELKTHLFELPTLIFPVPGETLHLYLAISTETLSSVLIKNDNST*RSIYFV 11
E AF++LK HL LPTL P+ GETL+LY+A+++ T+S+V+I+ ++ IYF+
Sbjct: 580 EQSTAFRQLKAHLITLPTLSRPMLGETLYLYIAVTSATVSAVIIREEDKQQHPIYFI 636
Score = 54.3 bits (129), Expect(3) = 3e-23
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = -2
Query: 392 ILSQDCIKANPEKVDTLLNMTPPRTIKEIQGLNSQLVALSKFLSKSAQRFLPFLQILKKN 213
++S I ANPEKV +L++ PR KE+ L ++ AL++F+S+S + PF ++LK N
Sbjct: 513 LVSARGIDANPEKVQAILDLLEPRNRKEVMMLTGRMAALARFISRSTDKSTPFFKVLKGN 572
Query: 212 QE 207
++
Sbjct: 573 KD 574
Score = 40.4 bits (93), Expect(3) = 3e-23
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -1
Query: 468 AIRRVNMKLNPKKCTFGVKKEKFLGYIIS 382
++R+ MKLNP KC FGV+ KFLG ++S
Sbjct: 487 SLRKYKMKLNPMKCNFGVRAGKFLGVLVS 515
>gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1908
Score = 60.8 bits (146), Expect(3) = 7e-22
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = -2
Query: 392 ILSQDCIKANPEKVDTLLNMTPPRTIKEIQGLNSQLVALSKFLSKSAQRFLPFLQILK 219
++S+ I+ANPEK+D + M PP ++ E+Q L ++ ALS+FLSK+A+R LPF + L+
Sbjct: 1111 LVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIAALSRFLSKAAERGLPFFKTLR 1168
Score = 50.1 bits (118), Expect(3) = 7e-22
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = -3
Query: 184 PEAENAFQELKTHLFELPTLIFPVPGETLHLYLAISTETLSSVLIKNDNST*RSIYFV 11
PE + AF ELK +L P LI P PG L LYLA S +S+ L++ S + +YFV
Sbjct: 1177 PECQAAFDELKQYLQSPPALISPPPGSELLLYLAASPVAISAALVQETESGQKPVYFV 1234
Score = 37.7 bits (86), Expect(3) = 7e-22
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -1
Query: 465 IRRVNMKLNPKKCTFGVKKEKFLGYIIS 382
+R +KLNP+KC FGV+ K LG+++S
Sbjct: 1086 LRAAGIKLNPEKCVFGVRAGKLLGFLVS 1113
>gb|AAT77305.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 986
Score = 61.6 bits (148), Expect(3) = 9e-22
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = -2
Query: 392 ILSQDCIKANPEKVDTLLNMTPPRTIKEIQGLNSQLVALSKFLSKSAQRFLPFLQILK 219
++S+ I+ANPEK+D + M PP ++ E+Q L ++ ALS+FLSK+A+R LPF + L+
Sbjct: 215 LVSERGIEANPEKIDAIQQMKPPSSVHEVQKLTGRIAALSRFLSKAAERGLPFFKTLR 272
Score = 49.7 bits (117), Expect(3) = 9e-22
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = -3
Query: 184 PEAENAFQELKTHLFELPTLIFPVPGETLHLYLAISTETLSSVLIKNDNST*RSIYFV 11
PE + AF ELK +L P LI P PG L LYLA S +S+ L++ S + +YFV
Sbjct: 281 PECQAAFDELKQYLQSPPALISPPPGSELLLYLAASPVAVSAALVQETESGQKPVYFV 338
Score = 37.0 bits (84), Expect(3) = 9e-22
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -1
Query: 468 AIRRVNMKLNPKKCTFGVKKEKFLGYIIS 382
++R +KLNP KC FGV+ K LG+++S
Sbjct: 189 SLRAAGIKLNPVKCVFGVRAGKLLGFLVS 217
>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 61.2 bits (147), Expect(3) = 1e-21
Identities = 27/62 (43%), Positives = 44/62 (70%)
Frame = -2
Query: 392 ILSQDCIKANPEKVDTLLNMTPPRTIKEIQGLNSQLVALSKFLSKSAQRFLPFLQILKKN 213
I+++ I+ANP +++ LNM P+ KE+Q L ++ AL++F+S+S + LPF QILK N
Sbjct: 667 IVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGN 726
Query: 212 QE 207
+E
Sbjct: 727 KE 728
Score = 45.8 bits (107), Expect(3) = 1e-21
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = -3
Query: 181 EAENAFQELKTHLFELPTLIFPVPGETLHLYLAISTETLSSVLIKNDNST*RSIYFVI 8
+ E AF +LK +L P L P E L+LY+++S +S VLI+ D + IY++I
Sbjct: 734 KCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGVLIREDRGEQKPIYYII 791
Score = 40.8 bits (94), Expect(3) = 1e-21
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -1
Query: 465 IRRVNMKLNPKKCTFGVKKEKFLGYIISR 379
+ + MKLNP KCTFGV +FLGYI+++
Sbjct: 642 LNQYQMKLNPAKCTFGVPSGEFLGYIVTK 670