BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00023713
         (1179 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   120   4e-40
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   127   1e-39
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga...   102   2e-39
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   130   2e-39
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   117   2e-39

>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  120 bits (302), Expect(2) = 4e-40
 Identities = 71/172 (41%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
 Frame = +3

Query: 624  VFELDLDSALGGDGFSEKFFQARWEIVSDDLFQAVLDFFAGVPIPCAIAATIMVLLPKVP 803
            +F +  + A G DG +  FFQ  W I+  DL   V  F         +  T + L+PK  
Sbjct: 221  LFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTE 280

Query: 804  SPKHFGEFRPISPCNFINKVFSVSRIQCDELRGLLPKLISEEQSAFLKGRDIADNILLAQ 983
             P    E RPIS CN   KV  +S+I C  L+ +LP LISE QSAF+ GR I+DNIL+AQ
Sbjct: 281  RPTRMTELRPISLCNVGYKV--ISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQ 338

Query: 984  EVLQHLDNKVAGQNKM--FKFDLMKAFFQVSWNFLKKLLAKFGFPDKFITLI 1133
            E+   L    + ++K    K D+ KA+ QV WNF++ LL K GF +K+I+ I
Sbjct: 339  EMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWI 390



 Score = 71.6 bits (174), Expect(2) = 4e-40
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 2/192 (1%)
 Frame = +2

Query: 2   FRFQNMWLHRDTFLPVVKKSWDELIEAFGMYHFTQRLRRLKDVLKDYIKNSFGNINQNIQ 181
           FRF   W+ +D  L  + + W+ L   F    F ++L   +  +  + K+      Q I+
Sbjct: 24  FRFDKRWIGKDGLLEAISQGWN-LDSGFREGQFVEKLTNCRRAISKWRKSLIPFGRQTIE 82

Query: 182 QAESRVKDLEEVFAQSQSDSDLIQLNAAQASLLRVLSEEETF*KQKARLKWIKEGHHCTK 361
             ++ +       AQ   D    ++      L     +EE +  QK+R  W+K G + +K
Sbjct: 83  DLKAELD-----VAQRDDDRSREEITELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSK 137

Query: 362 FFLASVTDKRRRLTIAKIQVSNGNWLSDPSTIKDHAVEFFQNLLPTED--VHFSRVEEAS 535
           FF A    +R R  I  +   NG W  +   I++ AV +FQNL  T +  V    + E  
Sbjct: 138 FFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQ 197

Query: 536 QQILEQISPLLT 571
             I ++I+ LLT
Sbjct: 198 VLITDRINDLLT 209


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 642

 Score =  127 bits (319), Expect(2) = 1e-39
 Identities = 69/172 (40%), Positives = 100/172 (58%)
 Frame = +3

Query: 618  NTVFELDLDSALGGDGFSEKFFQARWEIVSDDLFQAVLDFFAGVPIPCAIAATIMVLLPK 797
            N VF+L+ D A G D F   FFQ  W IV  D+++AVLDFF    +P    A  ++L+PK
Sbjct: 184  NAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPK 243

Query: 798  VPSPKHFGEFRPISPCNFINKVFSVSRIQCDELRGLLPKLISEEQSAFLKGRDIADNILL 977
             P+     ++R I+  NF  K+  ++++  D L  +LP +IS+EQ  F++GR+I D I L
Sbjct: 244  TPNADSVDQYRTIALVNFKFKI--INKVLADRLAKILPSIISKEQRGFVQGRNIRDCIAL 301

Query: 978  AQEVLQHLDNKVAGQNKMFKFDLMKAFFQVSWNFLKKLLAKFGFPDKFITLI 1133
              E +  LDNK  G N   K D+ KAF  ++W+FL  +L  FGF + F   I
Sbjct: 302  TSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWI 353



 Score = 63.5 bits (153), Expect(2) = 1e-39
 Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 1/209 (0%)
 Frame = +2

Query: 2   FRFQNMWLHRDTFLPVVKKSWDELIEAFGMYHFTQRLRRLKDVLKDYIKNSFGNINQNIQ 181
           F+F  MW   D+   +++  W+  +    +Y  + +L       K + K+ FGNI   + 
Sbjct: 5   FKFLKMWTLHDSCQKLIEDCWNVRVLGSPLYVLSSKL-------KVWNKDVFGNILIQVT 57

Query: 182 QAESRVKDLEEVFAQSQSDSDLIQLNA-AQASLLRVLSEEETF*KQKARLKWIKEGHHCT 358
           QAE ++ D++     S  + +L+     AQ +L   L ++ETF  +KA+LKW   G   T
Sbjct: 58  QAEKKLSDIQNHINTSGHNDNLMNAEKIAQTNLDLALQKQETFWVEKAKLKWHVGGDRNT 117

Query: 359 KFFLASVTDKRRRLTIAKIQVSNGNWLSDPSTIKDHAVEFFQNLLPTEDVHFSRVEEASQ 538
           K+F      K +   I+ ++      L+D + I +H      +LL         VEEA  
Sbjct: 118 KYFHRLTKIKNKTKIISSLR-KGEEILTDQTRISEH-----DHLL---------VEEAIP 162

Query: 539 QILEQISPLLTEAKQHLSRIPIYEEVKHS 625
           ++++  +  L      L+ +P  EEVK++
Sbjct: 163 KLVDATTNRL------LTMLPTKEEVKNA 185


>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1383

 Score =  102 bits (254), Expect(2) = 2e-39
 Identities = 55/160 (34%), Positives = 91/160 (56%)
 Frame = +3

Query: 642  DSALGGDGFSEKFFQARWEIVSDDLFQAVLDFFAGVPIPCAIAATIMVLLPKVPSPKHFG 821
            D A G DGF+ KF ++ W+I+  D++  V DF+    +P       + L+PK+ +P    
Sbjct: 444  DKAPGPDGFNFKFVKSAWDIIKTDIYGIVNDFWETGCLPQGCNTAYIALIPKIDNPSSLK 503

Query: 822  EFRPISPCNFINKVFSVSRIQCDELRGLLPKLISEEQSAFLKGRDIADNILLAQEVLQHL 1001
            ++RPIS   FI K+  V+++    L+ ++  LIS  QS+++KGR I D  L+A E+++  
Sbjct: 504  DYRPISMVGFIYKI--VAKLLAKRLQSVISSLISPLQSSYVKGRQILDGALVASEIIESC 561

Query: 1002 DNKVAGQNKMFKFDLMKAFFQVSWNFLKKLLAKFGFPDKF 1121
              +   +  + K D  KA+  VSWNFL+  L +  FP K+
Sbjct: 562  KKRNI-EAILLKLDFHKAYDSVSWNFLQWTLDQMNFPVKW 600



 Score = 87.8 bits (216), Expect(2) = 2e-39
 Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
 Frame = +2

Query: 2   FRFQNMWLHRDTFLPVVKKSWDELIEAFGMYHFTQRLRRLKDVLKDYIKNSFGNINQNIQ 181
           FRF N WL     + +V+ SW    +        ++L+  K  LK++  N FG+I+ NI+
Sbjct: 240 FRFNNCWLTDPKCMKIVEASWSSSPKI----SVVEKLKETKKRLKEWNLNEFGSIDANIR 295

Query: 182 QAESRVKDLEEVFAQSQSDSD-LIQLNAAQASLLRVLSEEETF*KQKARLKWIKEGHHCT 358
           + E  + + ++   + + D + L +   AQA L + +  +E +  Q++R+ W+K G   T
Sbjct: 296 KLEDCIANFDKEADERELDKEELEKRREAQADLWKWMKRKEIYWAQRSRITWLKAGDKNT 355

Query: 359 KFFLASVTDKRRRLTIAKIQVSNGNWLSDPSTIKDHAVEFFQNLL-------PT-EDVHF 514
           KFF A  ++K+R+  +A I+ ++G   +DPS IK  A  FF+ +        PT E++H 
Sbjct: 356 KFFHAIASNKKRKNMMACIE-TDGQSTNDPSQIKKEARAFFKKIFKEDHVKRPTLENLHL 414

Query: 515 SRVEEASQQILEQISPLLTE 574
            R+ +   Q    I+P  TE
Sbjct: 415 KRLSQ--NQANSLITPFTTE 432


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  130 bits (327), Expect(2) = 2e-39
 Identities = 67/169 (39%), Positives = 102/169 (60%)
 Frame = +3

Query: 618  NTVFELDLDSALGGDGFSEKFFQARWEIVSDDLFQAVLDFFAGVPIPCAIAATIMVLLPK 797
            N VF L+ D A G +GF   F+Q  W+IV  D+ Q+V DFF    +   I + ++VL+PK
Sbjct: 449  NAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADVIQSVQDFFISGQLAQNINSNLIVLIPK 508

Query: 798  VPSPKHFGEFRPISPCNFINKVFSVSRIQCDELRGLLPKLISEEQSAFLKGRDIADNILL 977
            VP  +  G++RPI+  NF  K+  +S+I  D L  +  ++IS EQ  F++ RDI+  ++L
Sbjct: 509  VPGARVMGDYRPIALANFQFKI--ISKILADRLADITMRIISVEQRGFIRDRDISKCVIL 566

Query: 978  AQEVLQHLDNKVAGQNKMFKFDLMKAFFQVSWNFLKKLLAKFGFPDKFI 1124
            A E +  L+ +  G N   K D+ KAF  + WNFL  +L +FGF +KF+
Sbjct: 567  ASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFV 615



 Score = 59.7 bits (143), Expect(2) = 2e-39
 Identities = 42/211 (19%), Positives = 100/211 (47%), Gaps = 3/211 (1%)
 Frame = +2

Query: 2   FRFQNMWLHRDTFLPVVKKSWDELIEAFGMYHFTQRLRRLKDVLKDYIKNSFGNINQNIQ 181
           F+F   W   +    +V ++W +     GM     +L+ +K V + + +  FG++++ ++
Sbjct: 247 FKFFKTWTEHEDCRRIVAENWSKHTRGHGMTRLQAKLKHMKQVFRHWNRTVFGDVDRKVR 306

Query: 182 QAESRVKDLEEVFAQSQSDSDLIQLNAAQASLL--RVLSEEETF*KQKARLKWIKEGHHC 355
            A   V  ++++   S   SD +     +A L+  + L  ++   ++K R +    G   
Sbjct: 307 MAVEEVNRIQQII-DSVGFSDQLYAQELEAHLILTKALHYQDELWREKLRDQRFIHGDRN 365

Query: 356 TKFFLASVTDKRRRLTIAKIQVSNGNWLSDPSTIKDHAVEFFQNLLPTEDVHFSRVEEAS 535
           T +F      +  + TI+ +Q  +   ++DP+ I+ H + +FQ +   ++         +
Sbjct: 366 TAYFHRISKVRATKNTISFLQDGDA-VITDPARIEVHVLNYFQAIFSVDNSCIQ-----N 419

Query: 536 QQILEQISPLLTEAKQH-LSRIPIYEEVKHS 625
             +++ I  L++    + L R+P++ EVK++
Sbjct: 420 DLVVDTIPSLVSNVDNNSLLRLPLWGEVKNA 450


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  117 bits (294), Expect(2) = 2e-39
 Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
 Frame = +3

Query: 624  VFELDLDSALGGDGFSEKFFQARWEIVSDDLFQAVLDFFAGVPIPCAIAATIMVLLPKVP 803
            +F++    A G DGF   F+Q  W I+ + +  AV  F  G  IP  +  +++VL+PKV 
Sbjct: 453  LFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVN 512

Query: 804  SPKHFGEFRPISPCNFINKVFSVSRIQCDELRGLLPKLISEEQSAFLKGRDIADNILLAQ 983
            +  H  +FRPIS CN + K+   S++  + L+  LP ++SE QSAF+ GR I D+ L+A 
Sbjct: 513  NASHLSKFRPISLCNVLYKI--ASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAY 570

Query: 984  EVLQHLDNKVAGQNKMF--KFDLMKAFFQVSWNFLKKLLAKFGFPDKFITLI 1133
            E L H   K   +N  F  K D+MKA+ +V W +L   L+K GF   +I  +
Sbjct: 571  ECL-HTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTV 621



 Score = 72.0 bits (175), Expect(2) = 2e-39
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
 Frame = +2

Query: 2   FRFQNMWLHRDTFLPVVKKSWD-ELIEAFGMYHFTQRLRRLKDVLKDYIKNSFGNINQNI 178
           FRF+  WL  + +  VV+ SW        G+      L+++   LKD+ K SFG++ + I
Sbjct: 252 FRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKI 311

Query: 179 QQAESRVKDLEEVFAQSQSDSDLIQLNAAQASLLRVLSEEETF*KQKARLKWIKEGHHCT 358
            + E ++K L +      +D  + +    +  L  +  +EE   +Q++R+ W++EG   T
Sbjct: 312 LKMERKLKSLRQ---SPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNT 368

Query: 359 KFFLASVTDKRRRLTIAKIQVSNGNWLSDPSTIKDHAVEFFQNLLPTE 502
            FF A  + +RR   I ++   +G+       IK  A  F++NL  +E
Sbjct: 369 AFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSE 416