BLASTX nr result

ID: Cephaelis21_contig00023100 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00023100
         (485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635508.1| PREDICTED: general transcription factor IIH ...    59   5e-07
emb|CBI25914.3| unnamed protein product [Vitis vinifera]               59   5e-07
emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]    59   5e-07
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...    56   3e-06
ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription f...    54   1e-05

>ref|XP_003635508.1| PREDICTED: general transcription factor IIH subunit 4-like, partial
           [Vitis vinifera]
          Length = 209

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +1

Query: 373 LCCSGVLPREPLPSNVALRLPSSEELDAYAANQWECF 483
           L   GVLPREP+PSN+ +RLPS ++L+AYA  QWECF
Sbjct: 83  LIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECF 119


>emb|CBI25914.3| unnamed protein product [Vitis vinifera]
          Length = 225

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +1

Query: 373 LCCSGVLPREPLPSNVALRLPSSEELDAYAANQWECF 483
           L   GVLPREP+PSN+ +RLPS ++L+AYA  QWECF
Sbjct: 83  LIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECF 119


>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +1

Query: 373 LCCSGVLPREPLPSNVALRLPSSEELDAYAANQWECF 483
           L   GVLPREP+PSN+ +RLPS ++L+AYA  QWECF
Sbjct: 114 LIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECF 150


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
           gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
           [Ricinus communis]
          Length = 451

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +1

Query: 385 GVLPREPLPSNVALRLPSSEELDAYAANQWECF 483
           GVLP EPL SN+A+RLP+ EELD YA  QWECF
Sbjct: 118 GVLPGEPLASNIAVRLPTLEELDTYALGQWECF 150


>ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like,
           partial [Cucumis sativus]
          Length = 296

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 22/32 (68%), Positives = 28/32 (87%)
 Frame = +1

Query: 388 VLPREPLPSNVALRLPSSEELDAYAANQWECF 483
           VL REP+PSN+ +RLPS E+L+AYA +QWECF
Sbjct: 119 VLAREPMPSNITVRLPSLEDLEAYALDQWECF 150


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