BLASTX nr result
ID: Cephaelis21_contig00022726
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00022726
(3745 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 237 2e-96
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 237 2e-95
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 239 4e-94
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 238 3e-83
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana] 239 2e-82
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 237 bits (605), Expect(3) = 2e-96
Identities = 118/364 (32%), Positives = 206/364 (56%), Gaps = 2/364 (0%)
Frame = +2
Query: 629 FWCQKARIKWLKDGDRNTSFFHASVKDKYRRLQIHKIKDSYGNWLESLDQIQHHALEFFQ 808
+W QK+R +W+K+GD+NT +FHA K +Y + +++ I D G +I +HA +FF
Sbjct: 717 YWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFT 776
Query: 809 TLYTRELQDPTVVEDSSNLLLSLIQPEITATDNIELLKPVEMDELQNTVFKLSPDSASGK 988
+++ + ++ + + +T T N++L K E+ + + ++ D A G
Sbjct: 777 NIFSTNGIKVSPIDFAD------FKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGP 830
Query: 989 DDFSGIFYHRCWEIIAKDLLGAVAEFMIGVPIPRAVASVQLILLPKKENPVDMGDYRPIS 1168
D + FY CW+I+ D++ V +F + ++ + ++PK NP + DYRPI+
Sbjct: 831 DGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIA 890
Query: 1169 VCNFLNKIFTRIISDRISILMPKIISQEQIAFLHGRDISDNILLVQELLQHLD--KMIKA 1342
+CN L K+ ++ + +R+ + I+S Q AF+ GR I+DN+++ E++ L K +
Sbjct: 891 LCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSK 950
Query: 1343 KNLVLKIDMMKAFDMISWDFLHNLLIQFGFHPNFIRLIMNNLSSSQFSVLINGVSSKFFK 1522
+ +K D+ KA+D + WDFL + FGF +I IM + S +SVLING +
Sbjct: 951 TYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYIT 1010
Query: 1523 PSRGLKQGDPLSPLLFIMVVEVLSRSLKQKISTGTMLPYSLPKGSPKISHLCFADDLIIF 1702
P+RG++QGDPLSP LFI+ ++LS + + S+G + + G+P I+HL FADD + F
Sbjct: 1011 PTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFF 1070
Query: 1703 TRAS 1714
+A+
Sbjct: 1071 CQAN 1074
Score = 95.5 bits (236), Expect(3) = 2e-96
Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 16/288 (5%)
Frame = +3
Query: 1692 LLFLQEHQKNSVQELCKVLKD----YEIATGQCANRTKSSFFISKHAKIQEQRMI*HSTN 1859
L F Q + +N C+ LKD YE +GQ N KS Q +
Sbjct: 1068 LFFCQANVRN-----CQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILE 1122
Query: 1860 MHKGSLPFKYLGNTLYKGRRKNIHFQHLIDKFNQKLSGWKGKILSPGGKIILLRRVLSSI 2039
+ KYLG GR+K F+++ID+ ++ S W + LSP GK I+L+ V ++
Sbjct: 1123 IPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAM 1182
Query: 2040 PPYTVEAMNPPKTVLKQLEKISAQFLWGNDTTTQRKVWRSWKKMAYPVTENGLGFRRFED 2219
P Y + PK ++ ++E + F W + + W +WK++ Y E GLGFR
Sbjct: 1183 PVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAK 1242
Query: 2220 IVQSYSCKLWWK---WRNGL---GLWAQYVKSVSWEQSFTRERLKSVDQLMRINTRILIK 2381
+ K W+ + N L + A+Y K VS + R++ +S ++ L+K
Sbjct: 1243 FNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQ-QSYGWASLLDGIALLK 1301
Query: 2382 NGACSLLYDNWT---GAGPIVDKF---ALEGMENLRDVKLRHIYDQAG 2507
G L+ D G IVD L E +++ + +++++ G
Sbjct: 1302 KGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKG 1349
Score = 70.9 bits (172), Expect(3) = 2e-96
Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 12/279 (4%)
Frame = +1
Query: 2497 TKQEDELIWLPQTAGNFTLASAF--------QEVRQKQPKHPALSFT*---NAVIPVKVS 2643
+K+ D++IW T G +T+ S + + P H ++ N I K+
Sbjct: 1379 SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLK 1438
Query: 2644 FLIWKILNSLIAFPEVLMSFGFQLASKCYACD-SIDSMDHTIISCPIAKNVWNSLQKVLS 2820
+W+ L+ +A E L + G ++ C C +S++H + +CP A W L
Sbjct: 1439 HFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLI 1498
Query: 2821 VQVPFSHDLFSTLQSCWEHNQWSILPKDILHTTNKIPIAAIWGIWKCRTQAIYQGTTPSQ 3000
S+D + + Q + + H +P+ IW IWK R ++ S
Sbjct: 1499 RNQLMSNDFEENISNILNFVQDTTMSD--FHKL--LPVWLIWRIWKARNNVVFNKFRESP 1554
Query: 3001 EAAARYAQEMFRSFTLLQPLKISRCSRAFFIHTQGLHFNPHIRTIMIVSWNKPPTGWLKL 3180
A+ + L ++ + T+ + N + W PP ++K
Sbjct: 1555 SKTVLSAKAETHDW-----LNATQSHKKTPSPTRQIAENK-------IEWRNPPATYVKC 1602
Query: 3181 NTDGSSISNTNKAGGGWVLRNDNGILILAASLIFPFMSN 3297
N D +A GGW++RN G I S+ SN
Sbjct: 1603 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSN 1641
Score = 94.0 bits (232), Expect = 3e-16
Identities = 52/175 (29%), Positives = 86/175 (49%)
Frame = +3
Query: 3 SFFLTFVNAKSTTRECRQLWGELLDLQAEVSTQPWLVGGDFNAILSMEESIGNTPPDGRS 182
SF+L+ V T E QLW + L+ ++ WL+ GDFN ILS E IG + +
Sbjct: 479 SFYLSCVYGHPTQSERHQLW-QTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWT 537
Query: 183 IADFSSFLNQMDLTELLTSGGNYTWTGIRSKGRVWRKLDRFLFNTSWLSSFPGSRMELLS 362
+F + ++ D+ ++ + G ++W G R V LDR N++W ++FP + +E L
Sbjct: 538 FRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCCLDRVFINSAWTATFPYAEIEFLD 597
Query: 363 RATSDHNPLIYTSETVTPNTAKIFRFQSMWLRRQDFMEVVNSCWNSPMEGYGTYI 527
SDH P++ P +K+FRF + + F +V + W + T I
Sbjct: 598 FTGSDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPI 652
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 237 bits (605), Expect(3) = 2e-95
Identities = 118/364 (32%), Positives = 206/364 (56%), Gaps = 2/364 (0%)
Frame = +2
Query: 629 FWCQKARIKWLKDGDRNTSFFHASVKDKYRRLQIHKIKDSYGNWLESLDQIQHHALEFFQ 808
+W QK+R +W+K+GD+NT +FHA K +Y + +++ I D G +I +HA +FF
Sbjct: 491 YWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFT 550
Query: 809 TLYTRELQDPTVVEDSSNLLLSLIQPEITATDNIELLKPVEMDELQNTVFKLSPDSASGK 988
+++ + ++ + + +T T N++L K E+ + + ++ D A G
Sbjct: 551 NIFSTNGIKVSPIDFAD------FKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGP 604
Query: 989 DDFSGIFYHRCWEIIAKDLLGAVAEFMIGVPIPRAVASVQLILLPKKENPVDMGDYRPIS 1168
D + FY CW+I+ D++ V +F + ++ + ++PK NP + DYRPI+
Sbjct: 605 DGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIA 664
Query: 1169 VCNFLNKIFTRIISDRISILMPKIISQEQIAFLHGRDISDNILLVQELLQHLD--KMIKA 1342
+CN L K+ ++ + +R+ + I+S Q AF+ GR I+DN+++ E++ L K +
Sbjct: 665 LCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSK 724
Query: 1343 KNLVLKIDMMKAFDMISWDFLHNLLIQFGFHPNFIRLIMNNLSSSQFSVLINGVSSKFFK 1522
+ +K D+ KA+D + WDFL + FGF +I IM + S +SVLING +
Sbjct: 725 TYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYIT 784
Query: 1523 PSRGLKQGDPLSPLLFIMVVEVLSRSLKQKISTGTMLPYSLPKGSPKISHLCFADDLIIF 1702
P+RG++QGDPLSP LFI+ ++LS + + S+G + + G+P I+HL FADD + F
Sbjct: 785 PTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFF 844
Query: 1703 TRAS 1714
+A+
Sbjct: 845 CQAN 848
Score = 95.5 bits (236), Expect(3) = 2e-95
Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 16/288 (5%)
Frame = +3
Query: 1692 LLFLQEHQKNSVQELCKVLKD----YEIATGQCANRTKSSFFISKHAKIQEQRMI*HSTN 1859
L F Q + +N C+ LKD YE +GQ N KS Q +
Sbjct: 842 LFFCQANVRN-----CQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILE 896
Query: 1860 MHKGSLPFKYLGNTLYKGRRKNIHFQHLIDKFNQKLSGWKGKILSPGGKIILLRRVLSSI 2039
+ KYLG GR+K F+++ID+ ++ S W + LSP GK I+L+ V ++
Sbjct: 897 IPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAM 956
Query: 2040 PPYTVEAMNPPKTVLKQLEKISAQFLWGNDTTTQRKVWRSWKKMAYPVTENGLGFRRFED 2219
P Y + PK ++ ++E + F W + + W +WK++ Y E GLGFR
Sbjct: 957 PVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAK 1016
Query: 2220 IVQSYSCKLWWK---WRNGL---GLWAQYVKSVSWEQSFTRERLKSVDQLMRINTRILIK 2381
+ K W+ + N L + A+Y K VS + R++ +S ++ L+K
Sbjct: 1017 FNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQ-QSYGWASLLDGIALLK 1075
Query: 2382 NGACSLLYDNWT---GAGPIVDKF---ALEGMENLRDVKLRHIYDQAG 2507
G L+ D G IVD L E +++ + +++++ G
Sbjct: 1076 KGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKG 1123
Score = 68.2 bits (165), Expect(3) = 2e-95
Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 12/279 (4%)
Frame = +1
Query: 2497 TKQEDELIWLPQTAGNFTLASAF--------QEVRQKQPKHPALSFT*---NAVIPVKVS 2643
+K+ D++IW T G +T+ S + + P H ++ N I K+
Sbjct: 1153 SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLK 1212
Query: 2644 FLIWKILNSLIAFPEVLMSFGFQLASKCYACD-SIDSMDHTIISCPIAKNVWNSLQKVLS 2820
+W+ L+ +A E L + G ++ C C +S++H + +CP A W L
Sbjct: 1213 HFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLI 1272
Query: 2821 VQVPFSHDLFSTLQSCWEHNQWSILPKDILHTTNKIPIAAIWGIWKCRTQAIYQGTTPSQ 3000
S+D + + Q + + H +P+ IW IWK R ++ S
Sbjct: 1273 RNQLMSNDFEENISNILNFVQDTTMSD--FHKL--LPVWLIWRIWKARNNVVFNKFRESP 1328
Query: 3001 EAAARYAQEMFRSFTLLQPLKISRCSRAFFIHTQGLHFNPHIRTIMIVSWNKPPTGWLKL 3180
A+ + L ++ + T+ + N + W PP ++K
Sbjct: 1329 SKTVLSAKAETHDW-----LNATQSHKKTPSPTRQIAENK-------IEWRNPPATYVKC 1376
Query: 3181 NTDGSSISNTNKAGGGWVLRNDNGILILAASLIFPFMSN 3297
N D +A GGW++RN G I S+ SN
Sbjct: 1377 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSN 1415
Score = 93.2 bits (230), Expect = 5e-16
Identities = 52/175 (29%), Positives = 85/175 (48%)
Frame = +3
Query: 3 SFFLTFVNAKSTTRECRQLWGELLDLQAEVSTQPWLVGGDFNAILSMEESIGNTPPDGRS 182
SF+L+ V T E QLW + L+ ++ WL+ GDFN ILS E IG + +
Sbjct: 253 SFYLSCVYGHPTQSERHQLW-QTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWT 311
Query: 183 IADFSSFLNQMDLTELLTSGGNYTWTGIRSKGRVWRKLDRFLFNTSWLSSFPGSRMELLS 362
+F + ++ D+ ++ + G ++W G R V LDR N++W ++FP + E L
Sbjct: 312 FRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCCLDRVFINSAWTATFPYAETEFLD 371
Query: 363 RATSDHNPLIYTSETVTPNTAKIFRFQSMWLRRQDFMEVVNSCWNSPMEGYGTYI 527
SDH P++ P +K+FRF + + F +V + W + T I
Sbjct: 372 FTGSDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPI 426
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 239 bits (610), Expect(3) = 4e-94
Identities = 119/364 (32%), Positives = 205/364 (56%), Gaps = 2/364 (0%)
Frame = +2
Query: 629 FWCQKARIKWLKDGDRNTSFFHASVKDKYRRLQIHKIKDSYGNWLESLDQIQHHALEFFQ 808
+W QK+R +W+K+GDRNT FFHA K ++ ++ IKD G +I HA EFF
Sbjct: 717 YWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFT 776
Query: 809 TLYTRELQDPTVVEDSSNLLLSLIQPEITATDNIELLKPVEMDELQNTVFKLSPDSASGK 988
+Y + ++++ + +P +T N +L K + E+ N + + D A G
Sbjct: 777 KVYESNGRPVSIIDFAG------FKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGP 830
Query: 989 DDFSGIFYHRCWEIIAKDLLGAVAEFMIGVPIPRAVASVQLILLPKKENPVDMGDYRPIS 1168
D + FY CWEI+ D++ V F + +++ + ++PK NP + DYRPI+
Sbjct: 831 DGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIA 890
Query: 1169 VCNFLNKIFTRIISDRISILMPKIISQEQIAFLHGRDISDNILLVQELLQHLD--KMIKA 1342
+CN L KI ++ + +R+ + I+S Q AF+ GR ++DN+++ E++ L K +
Sbjct: 891 LCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQ 950
Query: 1343 KNLVLKIDMMKAFDMISWDFLHNLLIQFGFHPNFIRLIMNNLSSSQFSVLINGVSSKFFK 1522
+ +K D+ KA+D + W+FL + FGF +I+ IM + S +SVL+NG+ +
Sbjct: 951 SYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQ 1010
Query: 1523 PSRGLKQGDPLSPLLFIMVVEVLSRSLKQKISTGTMLPYSLPKGSPKISHLCFADDLIIF 1702
P RG++QGDPLSP LFI+ ++L+ +K +++ G + + G P ++HL FADD + F
Sbjct: 1011 PQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFF 1070
Query: 1703 TRAS 1714
+++
Sbjct: 1071 CQSN 1074
Score = 98.6 bits (244), Expect(3) = 4e-94
Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 9/253 (3%)
Frame = +3
Query: 1692 LLFLQEHQKNSVQELCKVLKD----YEIATGQCANRTKSSFFISKHAKIQEQRMI*HSTN 1859
L F Q + +N C+ LKD YE +GQ N +KS Q + +
Sbjct: 1068 LFFCQSNVRN-----CQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILG 1122
Query: 1860 MHKGSLPFKYLGNTLYKGRRKNIHFQHLIDKFNQKLSGWKGKILSPGGKIILLRRVLSSI 2039
+ KYLG GR+K F ++I++ ++ S W K LSP GK I+L+ V S+
Sbjct: 1123 IQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSM 1182
Query: 2040 PPYTVEAMNPPKTVLKQLEKISAQFLWGNDTTTQRKVWRSWKKMAYPVTENGLGFRRFED 2219
P Y + P ++ ++E + F W + + W +WK++ Y E GLGFR
Sbjct: 1183 PVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAK 1242
Query: 2220 IVQSYSCKLWWKW-RNGLGLWAQYVKSVSWEQ----SFTRERLKSVDQLMRINTRILIKN 2384
+ K W+ N L+A+ +K+ + + R+R +S + +IK
Sbjct: 1243 FNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKK 1302
Query: 2385 GACSLLYDNWTGA 2423
G+ ++ D TG+
Sbjct: 1303 GSRFIVGDGKTGS 1315
Score = 58.5 bits (140), Expect(3) = 4e-94
Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 2/254 (0%)
Frame = +1
Query: 2506 EDELIWLPQTAGNFTLASAFQEVRQKQPKHPALSFT*NAVIPVKVSFLIWKILNSLIAFP 2685
+D+L+W ++G++TL K P +IP K+ +++W+ ++ +
Sbjct: 1347 QDKLVWNYSSSGDYTL--------WKLP-----------IIP-KIKYMLWRTISKALPTR 1386
Query: 2686 EVLMSFGFQLASKCYACDSID-SMDHTIISCPIAKNVWNSLQKVLSVQVPFSHDLFSTLQ 2862
L++ G + C C + + +++H + +CP A ++W FS D +
Sbjct: 1387 SRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENIS 1446
Query: 2863 SCWEHNQWSILPKDILHTTNKI-PIAAIWGIWKCRTQAIYQGTTPSQEAAARYAQEMFRS 3039
+ N +S + L+T ++ P IW +WK R ++ + S +
Sbjct: 1447 --FLINSFS---NNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNE 1501
Query: 3040 FTLLQPLKISRCSRAFFIHTQGLHFNPHIRTIMIVSWNKPPTGWLKLNTDGSSISNTNKA 3219
+ LQ ++R A + N V W KP +K N D N ++
Sbjct: 1502 W--LQ--SVNRREDASVLTRSSHRAN--------VRWKKPVFPLVKCNFDAGFTGNNTQS 1549
Query: 3220 GGGWVLRNDNGILI 3261
GGW++ +LI
Sbjct: 1550 TGGWIIPETKALLI 1563
Score = 84.7 bits (208), Expect = 2e-13
Identities = 51/170 (30%), Positives = 75/170 (44%)
Frame = +3
Query: 3 SFFLTFVNAKSTTRECRQLWGELLDLQAEVSTQPWLVGGDFNAILSMEESIGNTPPDGRS 182
+F+L+ V E LW +L ++ PW++ GDFN ILS E IG D +
Sbjct: 479 NFYLSRVYGHPCQSERHSLWTHFENL-SKTRNDPWILIGDFNEILSNNEKIGGPQRDEWT 537
Query: 183 IADFSSFLNQMDLTELLTSGGNYTWTGIRSKGRVWRKLDRFLFNTSWLSSFPGSRMELLS 362
F + ++ DL ++ + G ++W G R V LDR N+ FP + +E L
Sbjct: 538 FRGFRNMVSTCDLKDIRSIGDRFSWVGERHSHTVKCCLDRAFINSEGAFLFPFAELEFLE 597
Query: 363 RATSDHNPLIYTSETVTPNTAKIFRFQSMWLRRQDFMEVVNSCWNSPMEG 512
SDH PL + E + FRF L F V + WN + G
Sbjct: 598 FTGSDHKPLFLSLEKTETRKMRPFRFDKRLLEVPHFKTYVKAGWNKAING 647
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 238 bits (607), Expect(2) = 3e-83
Identities = 130/362 (35%), Positives = 207/362 (57%), Gaps = 1/362 (0%)
Frame = +2
Query: 632 WCQKARIKWLKDGDRNTSFFHASVKDKYRRLQIHKIKDSYGNWLESLDQIQHHALEFFQT 811
W QK+R K L GDRNT+FFH S + RR +I +KDS W+ + ++ A+++++
Sbjct: 151 WFQKSREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRK 210
Query: 812 LYTRELQDPTVVEDSSNLLLSLIQPEITATDNIELLKPVEMDELQNTVFKLSPDSASGKD 991
LY+ L+D +VV + L + P +T + L +P DE+ V + A G D
Sbjct: 211 LYS--LEDVSVVRGT---LPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPD 265
Query: 992 DFSGIFYHRCWEIIAKDLLGAVAEFMIGVPIPRAVASVQLILLPKKENPVDMGDYRPISV 1171
+ +FY +CWE + + + V EF +P++ V L+LL K P + +RP+S+
Sbjct: 266 GYQPVFYQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSL 325
Query: 1172 CNFLNKIFTRIISDRISILMPKIISQEQIAFLHGRDISDNILLVQELLQHLDKMIKAKN- 1348
CN L KI T+++ R+ ++ K+I Q +F+ GR DNI++VQE + + + K
Sbjct: 326 CNVLFKIITKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGW 385
Query: 1349 LVLKIDMMKAFDMISWDFLHNLLIQFGFHPNFIRLIMNNLSSSQFSVLINGVSSKFFKPS 1528
++LK+D+ KA+D I WDFL L G +I+ IM ++ + S+L NG + F P
Sbjct: 386 MLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPE 445
Query: 1529 RGLKQGDPLSPLLFIMVVEVLSRSLKQKISTGTMLPYSLPKGSPKISHLCFADDLIIFTR 1708
RGL+QGDP+SP LF++ +E L ++ + G S+ +G PK+SH+CFADDLI+F
Sbjct: 446 RGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAE 505
Query: 1709 AS 1714
AS
Sbjct: 506 AS 507
Score = 100 bits (248), Expect(2) = 3e-83
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 1/180 (0%)
Frame = +3
Query: 1758 EIATGQCANRTKSSFFISKHAKIQEQRMI*HSTNMHKGSLPFKYLGNTLYKGRRKNIHFQ 1937
E + Q + KS F S + + +I T + KYLG + + R F
Sbjct: 505 EASVAQKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFG 564
Query: 1938 HLIDKFNQKLSGWKGKILSPGGKIILLRRVLSSIPPYTVEAMNPPKTVLKQLEKISAQFL 2117
++++ + +LSGWK + LS G+I L + VL SIP +T+ ++ P ++L+QL+K+S FL
Sbjct: 565 EVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFL 624
Query: 2118 WGNDTTTQRKVWRSWKKMAYPVTENGLGFRRFEDIVQSYSCKLWWKWRNG-LGLWAQYVK 2294
WG+ +++ SWKK+ P GLG R +D+ ++ K+ W+ N + LWA+ ++
Sbjct: 625 WGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLR 684
>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
Length = 1023
Score = 239 bits (610), Expect(2) = 2e-82
Identities = 128/366 (34%), Positives = 206/366 (56%), Gaps = 2/366 (0%)
Frame = +2
Query: 629 FWCQKARIKWLKDGDRNTSFFHASVKDKYRRLQIHKIKDSYGNWLESLDQIQHHALEFFQ 808
+W QK+R W+K GD N+ +FHA K + R +I + D G W +QH A+ +F+
Sbjct: 185 YWYQKSRSLWMKVGDNNSKYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVSYFE 244
Query: 809 TLYTRELQDPTVVEDSSNLLLSLIQPEITATDNIELLKPVEMDELQNTVFKLSPDSASGK 988
TL+ + +P + +S + + +LI +I N L P DE++ +F + P+ A G
Sbjct: 245 TLFNKS--NPQNIAESLSEVKTLITDQI----NDFLTTPATEDEVRAALFLMHPEKAPGP 298
Query: 989 DDFSGIFYHRCWEIIAKDLLGAVAEFMIGVPIPRAVASVQLILLPKKENPVDMGDYRPIS 1168
D + +F+ + W I D+L V F+ + + + + L+PK E P M + RPIS
Sbjct: 299 DGMTALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPIS 358
Query: 1169 VCNFLNKIFTRIISDRISILMPKIISQEQIAFLHGRDISDNILLVQELLQHL--DKMIKA 1342
+CN KI ++I+ R+ ++P +IS+ AF+ GR ISDNIL+ QE+ L + K
Sbjct: 359 LCNVGYKIISKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKG 418
Query: 1343 KNLVLKIDMMKAFDMISWDFLHNLLIQFGFHPNFIRLIMNNLSSSQFSVLINGVSSKFFK 1522
K + +K DM KA+D + W+F+ LL + GF +I IM +++ Q+ VL+NG
Sbjct: 419 KFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIV 478
Query: 1523 PSRGLKQGDPLSPLLFIMVVEVLSRSLKQKISTGTMLPYSLPKGSPKISHLCFADDLIIF 1702
P RGL+QGDPLSP LFI+ EVL ++++ + + SP +SHL FA+D + F
Sbjct: 479 PKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFF 538
Query: 1703 TRASKK 1720
+A+K+
Sbjct: 539 CKANKE 544
Score = 96.3 bits (238), Expect(2) = 2e-82
Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 5/236 (2%)
Frame = +3
Query: 1695 LFLQEHQKNSVQELCKVLKDYEIATGQCANRTKSSFFISKHAKIQEQRMI*HSTNMHKGS 1874
LF + K + +LK YE +GQ N +KSS + I + +H
Sbjct: 536 LFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIG 595
Query: 1875 LPFKYLGNTLYKGRRKNIHFQHLIDKFNQKLSGWKGKILSPGGKIILLRRVLSSIPPYTV 2054
YLG G K F + D+ +++GW K LS GGK ++++ V++ +P Y +
Sbjct: 596 GMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVM 655
Query: 2055 EAMNPPKTVLKQLEKISAQFLWGNDTTTQRKVWRSWKKMAYPVTENGLGFRRFEDIVQSY 2234
PKT+ +L A+F W +D ++ W +W K+ + GLGFR D +
Sbjct: 656 SCFRLPKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFNSAL 715
Query: 2235 SCKLWWKWRN-GLGLWAQYVKSVSWEQSFTRERLKSVDQLMR----INTRILIKNG 2387
K W+ L+A+ K + +S ++LKS I+ R L+K G
Sbjct: 716 LAKQLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYSPSYGWRSIISARSLVKKG 771