BLASTX nr result

ID: Cephaelis21_contig00022690 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00022690
         (546 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB70448.1| Strong similarity to Arabidopsis REV3C (gb|X62461...   175   5e-42
emb|CAA44318.1| H1flk [Arabidopsis thaliana]                          175   5e-42
ref|NP_171924.2| protein H1flk [Arabidopsis thaliana] gi|1107422...   175   5e-42
ref|XP_002892205.1| predicted protein [Arabidopsis lyrata subsp....   173   2e-41
ref|XP_002312572.1| predicted protein [Populus trichocarpa] gi|2...   166   2e-39

>gb|AAB70448.1| Strong similarity to Arabidopsis REV3C (gb|X62461) [Arabidopsis
           thaliana] gi|111074216|gb|ABH04481.1| At1g04280
           [Arabidopsis thaliana]
          Length = 480

 Score =  175 bits (443), Expect = 5e-42
 Identities = 83/124 (66%), Positives = 102/124 (82%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   RRAIQSGRAVRVKPQLKSHKRFANAFPKYCPLVDNARLYCTNGIGEPPKLIAWKDGDSKL 182
           RRA+   RAVRVKPQL SHKRFANAFPKYC LVDNARLYCTN +G PP+LIAWKDG+SKL
Sbjct: 351 RRALMVKRAVRVKPQLNSHKRFANAFPKYCELVDNARLYCTNAVGGPPRLIAWKDGNSKL 410

Query: 183 LIDPENM-CLDVVGNLNDEAESIHELYKDSHLIYQPGSIWKDLVLLPARPALQQELKTAI 359
           L+DPE++ CL  V +LN +AESI+ELY D   + +PGS+W D+VL+P+RP +Q+EL  AI
Sbjct: 411 LVDPEDIDCLKRVSSLNPDAESIYELYPDPSQLSKPGSVWNDVVLVPSRPKVQKELSDAI 470

Query: 360 AKIE 371
            +IE
Sbjct: 471 RRIE 474


>emb|CAA44318.1| H1flk [Arabidopsis thaliana]
          Length = 525

 Score =  175 bits (443), Expect = 5e-42
 Identities = 83/124 (66%), Positives = 102/124 (82%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   RRAIQSGRAVRVKPQLKSHKRFANAFPKYCPLVDNARLYCTNGIGEPPKLIAWKDGDSKL 182
           RRA+   RAVRVKPQL SHKRFANAFPKYC LVDNARLYCTN +G PP+LIAWKDG+SKL
Sbjct: 396 RRALMVKRAVRVKPQLNSHKRFANAFPKYCELVDNARLYCTNAVGGPPRLIAWKDGNSKL 455

Query: 183 LIDPENM-CLDVVGNLNDEAESIHELYKDSHLIYQPGSIWKDLVLLPARPALQQELKTAI 359
           L+DPE++ CL  V +LN +AESI+ELY D   + +PGS+W D+VL+P+RP +Q+EL  AI
Sbjct: 456 LVDPEDIDCLKRVSSLNPDAESIYELYPDPSQLSKPGSVWNDVVLVPSRPKVQKELSDAI 515

Query: 360 AKIE 371
            +IE
Sbjct: 516 RRIE 519


>ref|NP_171924.2| protein H1flk [Arabidopsis thaliana] gi|110742284|dbj|BAE99067.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332189557|gb|AEE27678.1| protein H1flk [Arabidopsis
           thaliana]
          Length = 534

 Score =  175 bits (443), Expect = 5e-42
 Identities = 83/124 (66%), Positives = 102/124 (82%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   RRAIQSGRAVRVKPQLKSHKRFANAFPKYCPLVDNARLYCTNGIGEPPKLIAWKDGDSKL 182
           RRA+   RAVRVKPQL SHKRFANAFPKYC LVDNARLYCTN +G PP+LIAWKDG+SKL
Sbjct: 405 RRALMVKRAVRVKPQLNSHKRFANAFPKYCELVDNARLYCTNAVGGPPRLIAWKDGNSKL 464

Query: 183 LIDPENM-CLDVVGNLNDEAESIHELYKDSHLIYQPGSIWKDLVLLPARPALQQELKTAI 359
           L+DPE++ CL  V +LN +AESI+ELY D   + +PGS+W D+VL+P+RP +Q+EL  AI
Sbjct: 465 LVDPEDIDCLKRVSSLNPDAESIYELYPDPSQLSKPGSVWNDVVLVPSRPKVQKELSDAI 524

Query: 360 AKIE 371
            +IE
Sbjct: 525 RRIE 528


>ref|XP_002892205.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297338047|gb|EFH68464.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 479

 Score =  173 bits (438), Expect = 2e-41
 Identities = 82/124 (66%), Positives = 101/124 (81%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   RRAIQSGRAVRVKPQLKSHKRFANAFPKYCPLVDNARLYCTNGIGEPPKLIAWKDGDSKL 182
           RRA+   RAVRVKPQL SHKRFANAFPKYC LVDNARLYCTN +G PP+LIAWKDG+SKL
Sbjct: 350 RRALIVKRAVRVKPQLNSHKRFANAFPKYCELVDNARLYCTNAVGGPPRLIAWKDGNSKL 409

Query: 183 LIDPENM-CLDVVGNLNDEAESIHELYKDSHLIYQPGSIWKDLVLLPARPALQQELKTAI 359
           L+DPE+  CL  V +LN +AESI+ELY D   + +PGS+W D+VL+P+RP +Q+EL  A+
Sbjct: 410 LVDPEDFECLKRVSSLNPDAESIYELYPDPSQLSKPGSVWNDVVLVPSRPKVQKELSDAV 469

Query: 360 AKIE 371
            +IE
Sbjct: 470 RRIE 473


>ref|XP_002312572.1| predicted protein [Populus trichocarpa] gi|222852392|gb|EEE89939.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score =  166 bits (421), Expect = 2e-39
 Identities = 82/124 (66%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
 Frame = +3

Query: 3   RRAIQSGRAVRVKPQLKSHKRFANAFPKYCPLVDNARLYCTNGIGEPPKLIAWKDGDSKL 182
           RRAI +  AVRV  QLKSHKRFA+AF +YC LVDNARLYCTN +G PP LIAWKDGD+KL
Sbjct: 185 RRAITTRGAVRVDSQLKSHKRFASAFERYCQLVDNARLYCTNSVGAPPSLIAWKDGDNKL 244

Query: 183 LIDPEN-MCLDVVGNLNDEAESIHELYKDSHLIYQPGSIWKDLVLLPARPALQQELKTAI 359
           LIDPE   CL    NL  +AESI+ELY D   I++PGS+WKD+VL P+RP +Q ELKT+I
Sbjct: 245 LIDPEGYKCLTNASNLRADAESIYELYTDPSPIFKPGSVWKDIVLDPSRPTVQSELKTSI 304

Query: 360 AKIE 371
             IE
Sbjct: 305 LNIE 308


Top