BLASTX nr result

ID: Cephaelis21_contig00020652 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00020652
         (569 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533493.1| conserved hypothetical protein [Ricinus comm...    56   4e-06
gb|ABK92787.1| unknown [Populus trichocarpa] gi|118489319|gb|ABK...    56   4e-06
ref|XP_002334496.1| predicted protein [Populus trichocarpa] gi|2...    55   8e-06

>ref|XP_002533493.1| conserved hypothetical protein [Ricinus communis]
           gi|223526655|gb|EEF28897.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 139

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = +2

Query: 80  LDQLDDTIFAITFVTAFALLHLPYDHITNSNIPVPRVIFKDKPSLFQAFVLALNFAFTGA 259
           L  LD+ IF ++ +T  A+L+LP ++I     PVP VIF   PS+F AF++ L  +  G+
Sbjct: 43  LSHLDEVIFTVSCLTTIAILYLPMEYIAEK--PVPSVIFHGHPSMFHAFLICLMGSCFGS 100

Query: 260 VVAICTRRGYPKMAR 304
           V +I  R   PK+ +
Sbjct: 101 VCSIHLRERSPKVGK 115


>gb|ABK92787.1| unknown [Populus trichocarpa] gi|118489319|gb|ABK96464.1| unknown
           [Populus trichocarpa x Populus deltoides]
          Length = 126

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 35/90 (38%), Positives = 53/90 (58%)
 Frame = +2

Query: 35  MAPETDKKPSSYSSPLDQLDDTIFAITFVTAFALLHLPYDHITNSNIPVPRVIFKDKPSL 214
           MA + + + S  S P +    +I  ITF T   L  LP ++I  +  PVP VIFK  PS+
Sbjct: 1   MATKINHQISPNSGPTELQLKSILIITFTTGMFLNLLPQENIDGN--PVPTVIFKGHPSI 58

Query: 215 FQAFVLALNFAFTGAVVAICTRRGYPKMAR 304
           F AFV+++ FAFTG+  ++   +  PK++R
Sbjct: 59  FHAFVISVVFAFTGSFCSLMIDK-KPKVSR 87


>ref|XP_002334496.1| predicted protein [Populus trichocarpa]
           gi|224121804|ref|XP_002330657.1| predicted protein
           [Populus trichocarpa] gi|222872261|gb|EEF09392.1|
           predicted protein [Populus trichocarpa]
           gi|222872551|gb|EEF09682.1| predicted protein [Populus
           trichocarpa]
          Length = 132

 Score = 55.1 bits (131), Expect = 8e-06
 Identities = 32/79 (40%), Positives = 47/79 (59%)
 Frame = +2

Query: 35  MAPETDKKPSSYSSPLDQLDDTIFAITFVTAFALLHLPYDHITNSNIPVPRVIFKDKPSL 214
           MA + + + S  S P +    +I  ITF T   L  LP ++I  +  PVP VIFK  PS+
Sbjct: 1   MATKINHQISPNSGPTELQLKSILIITFTTGMFLNLLPQENIDGN--PVPTVIFKGHPSI 58

Query: 215 FQAFVLALNFAFTGAVVAI 271
           F AFV+++ FAFTG+  ++
Sbjct: 59  FHAFVISVVFAFTGSFCSL 77


Top