BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00013350
         (3655 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1201   0.0  
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...  1144   0.0  
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...  1137   0.0  
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...  1106   0.0  
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...  1077   0.0  

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score = 1201 bits (3106), Expect = 0.0
 Identities = 634/1215 (52%), Positives = 820/1215 (67%), Gaps = 61/1215 (5%)
 Frame = +2

Query: 194  PLAILRSMTFSILSEADAAKKSAKIIGAVSEVTDPALGLPNLKNQCFTCGSRDRKECEG- 370
            P  +L  + F + +E D  K S   I AV+E+TDP LG+PN   QC TCG++D K+CEG 
Sbjct: 12   PSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGA 71

Query: 371  --------------------------------HFGLINFPFTILNPYFLPEVAQILNKLC 454
                                            HFG+I FPFTIL+PYFL EV QILNK+C
Sbjct: 72   VRQVIQKLYLLMISCYLYFLEYAKLXLFIFLGHFGVIKFPFTILHPYFLTEVVQILNKIC 131

Query: 455  PACKSVRLDK-VKRSESTSTL--PNDCKYCNPGRSKDLYPLIKFRVSSKDVFAKTAITAE 625
            P CKS R  + VK ++S S       CKYC    S D YP +KF+VSSKD+F KTAI  E
Sbjct: 132  PGCKSTRQGQWVKGADSGSRRLRSKGCKYC-AANSNDWYPTMKFKVSSKDLFRKTAIIVE 190

Query: 626  AIERPSSNRTPKA---KIASDYWDIIPSDDHQDEGSLSSNKRVLSHAQVYHILKDVDPRV 796
              E+       K+    +  DYWD IP D  Q+E  L+ N+RVLSHAQV+++LKD+DP  
Sbjct: 191  MNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGF 250

Query: 797  LDSFSNRKNSILLNCFLLTPNCHRVTEF------GEHIMFDITTKHYKKLIDFKGTANEL 958
            +  F +R +S  LNC  +TPN HRVTE       G+ ++FD  ++ YKKL+DF+GTANEL
Sbjct: 251  IKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANEL 310

Query: 959  STRVLERIRVSKVHSEXXXXXXXXXXXXXXXXXXXXXGLKYIKELLLGKRSDFTFRMVVV 1138
            S RVL+ ++ SK+ SE                     GLK+IKE+LLGKR++ +FRM+VV
Sbjct: 311  SCRVLDCLKTSKLRSEKSTSKDSASKMS---------GLKWIKEVLLGKRTNHSFRMIVV 361

Query: 1139 GDPYIKVGEIGVPRHIAEKLRVSEHVNKWNFDKLERYVTLMLXXXXXXXXXXXXXXXKLT 1318
            GDP +++ EIG+P HIAE+L +SEH+N WN++K+     L L                + 
Sbjct: 362  GDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVR 421

Query: 1319 IVDKLYNGDVLYRPILDGDVVLINRPPSIHQHSILSLCVRILPISSALSINPLVCSPLRG 1498
             ++    GD++YRP+ DGD+VLINRPPSIHQHS+++L V++LP++S +SINPL CSP RG
Sbjct: 422  RMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRG 481

Query: 1499 DFDGDCLHGYVPQSVDSRVELHELVALDKQLLNGQSGRNLLSLSHDSLTAAHLILEDGVT 1678
            DFDGDCLHGY+PQSVDSRVEL ELVAL++QL+N QSGRNLLSLS DSL+AAHL++EDGV 
Sbjct: 482  DFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVL 541

Query: 1679 LNKLQMQQLQMFCSFQLQFPAITKTQE-NTCFWTGKQLFSQLMPPGFDYVFRSNGVCITK 1855
            LN  QMQQL+MFC +QLQ PAI K    +T  WTGKQLFS L+PPGF+YVF  NGV I+ 
Sbjct: 542  LNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISD 601

Query: 1856 GEIVTSSGGSTWLRDTDGNLFNGLINYCKDEVIGILYAAQEVLCEWLSVRGLSVSLSDLY 2035
            GE+++SS GS WLRD DGNLF+ L+  C+ + +  LYAAQEVLCEWLS+RGLSVSLSD+Y
Sbjct: 602  GELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIY 661

Query: 2036 LASDPYSRENMIHEVSCGLQEAEYLSDIELTMVDLNKNFLVECTEEKEKIGDSGVDHMSI 2215
            L+SD  SR+NMI EV CGL  AE     +  +VD ++NFL+   E  +      V  +  
Sbjct: 662  LSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWY 721

Query: 2216 PQQKSAALSQASVSAFKRVFSDIQYLAYQYATKHNSFLAMLKAGSKGNLQKLVQHSMCLG 2395
             +Q SAAL Q+SV AFK+ F DIQ L YQYA K NS LAMLKAGSKGNL KLVQ  +CLG
Sbjct: 722  ERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLG 781

Query: 2396 LQHSVAPLSFTLPPWLSCAAWNDHK----ISHGCSGYSESYIPFAMVENSFLTGLNPLEC 2563
            LQHS+ PLSF +P  LSCAAWN  K    I +  S Y+ESYIP+A+VENSFL GLNPLEC
Sbjct: 782  LQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLEC 841

Query: 2564 FVHSLTNRDGSFSGHADVSGTLTRKLTFFMRDICIAYDGTVRNAYGNQIVQFSYN----- 2728
            FVHS+T+RD SFS +AD+ GTLTR+L FFMRD+ IAYDGTVRNAYGNQ+VQFSYN     
Sbjct: 842  FVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTS 901

Query: 2729 ------TQGTCAHDILGGHPVGXXXXXXXXXXXXXXLDQPISALESSPLLNLKKILDCGV 2890
                   + TCA+D +GG PVG              LDQPIS LE SPLLNLK++L+CG+
Sbjct: 902  TPSDGINEDTCAYD-MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGL 960

Query: 2891 KRSNGEKTASIFLSKQLGKLSHGFEHGALEVKDHLQRLKLGEIVSHVMISYSQELCGPAH 3070
            ++S  ++T S+FLSK+L K  HGFE+GALEVK+HL++L   +IVS VMI +S +     H
Sbjct: 961  RKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTH 1020

Query: 3071 VSPWICHFHVSKETVKRRRVRMHSIVDALHATWETVKVKVKLRSKLDLPELQITINMGCS 3250
             SPW+CHFHV +E  K+R ++ HSI+DAL+    + + +    SK++LP+LQIT +  C 
Sbjct: 1021 FSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAE----SKINLPDLQIT-SKDCF 1075

Query: 3251 LAVKQNETDSNSNICIIVSVVEKSRRLSSQLDVIRDIVIPSLLGSVIKGFPEFKKIDISW 3430
            + +++ ++D     CI VS+V  S++   QLD +RD+VIP LLG+V+KG  + KK+DI W
Sbjct: 1076 VDMEKEDSDC---FCITVSIV-NSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILW 1131

Query: 3431 KDCPNVAXXXXXXXXXLYLRVYMSENCDRAKFWSILVDRCLRISDVIDWERSHPDDIRDM 3610
             D P+ +         LYLRVY+S +C +  FW +L+D CL+I D+IDWERSHPD+I D+
Sbjct: 1132 NDNPD-SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDI 1190

Query: 3611 TSAYGIDAAANHFIN 3655
               YGIDA   +F+N
Sbjct: 1191 FVVYGIDAGWKYFLN 1205


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score = 1144 bits (2959), Expect = 0.0
 Identities = 602/1182 (50%), Positives = 793/1182 (67%), Gaps = 29/1182 (2%)
 Frame = +2

Query: 194  PLAILRSMTFSILSEADAAKKSAKIIGAVSEVTDPALGLPNLKNQCFTCGSRDRKECEGH 373
            P A+L ++TF + +EA+  K S   I  VSEVTD  LGLPN  NQC TCGS+D K CEGH
Sbjct: 13   PSALLTAITFGVSTEAEKEKLSVLTIDTVSEVTDSKLGLPNPTNQCSTCGSKDLKSCEGH 72

Query: 374  FGLINFPFTILNPYFLPEVAQILNKLCPACKSVRLDKVKRSESTSTLPNDCKYCNPGRSK 553
            FG+I FPFTIL+PY+L EV +ILN++CP CKS+R +   R            + NP    
Sbjct: 73   FGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKESKVRC---------LNHLNPKLPV 123

Query: 554  DL-----YPLIKFRVSSKDVFAKTAITAEAIERP---SSNRTPKAKIASDYWDIIPSDDH 709
             L     YP +KF VSS+++F K  I A+  ERP   S  R  K K+A+DYWDIIP D+ 
Sbjct: 124  LLILLCWYPAMKFSVSSEEIFRKNVIIAKFSERPTNKSQKRGFKKKLAADYWDIIPKDEQ 183

Query: 710  QDEGSLSSNKRVLSHAQVYHILKDVDPRVLDSFSNRKNSILLNCFLLTPNCHRVTEF--- 880
            Q+E     N+RVLSHAQV H+L+++DP  +  F  +++SI LNCF +TPNCHRVTE    
Sbjct: 184  QEENITRPNQRVLSHAQVIHLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHA 243

Query: 881  ---GEHIMFDITTKHYKKLIDFKGTANELSTRVLERIRVSKVHSEXXXXXXXXXXXXXXX 1051
               G+ ++FD  T+ YKK++DF+G A ELS RVL+ ++ SK++ +               
Sbjct: 244  FSNGQRLVFDDRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKSVNNDDYMALQRKM 303

Query: 1052 XXXXXX--GLKYIKELLLGKRSDFTFRMVVVGDPYIKVGEIGVPRHIAEKLRVSEHVNKW 1225
                    GL++IK+++LGKR+D +FRMVVVGDP IK  EIG+P  IAE+L++SEH+  W
Sbjct: 304  NDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTW 363

Query: 1226 NFDKLERYVTLMLXXXXXXXXXXXXXXXKLTIVDKLYNGDVLYRPILDGDVVLINRPPSI 1405
            N+DKL     + L               ++    +L  GD++YRP+ DGD VLINRPPSI
Sbjct: 364  NWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVLINRPPSI 423

Query: 1406 HQHSILSLCVRILPISSALSINPLVCSPLRGDFDGDCLHGYVPQSVDSRVELHELVALDK 1585
            HQHS+++L V++LP +S L+INPL+C+P RGDFDGDCLHGYVPQSVD+RVEL ELVALDK
Sbjct: 424  HQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDK 483

Query: 1586 QLLNGQSGRNLLSLSHDSLTAAHLILEDGVTLNKLQMQQLQMFCSFQLQFPAITKTQE-N 1762
            QL+N Q+GRNLLS S DSL AAHL++EDGV L+  QMQQLQMFC  QL  PA+ K    N
Sbjct: 484  QLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPAVRKAPSLN 543

Query: 1763 TCFWTGKQLFSQLMPPGFDYVFRSNGVCITKGEIVTSSGGSTWLRDTDGNLFNGLINYCK 1942
             C WTGKQL S L+P GFD+   S+ V I  GE++ SS GS WLRDTDGNLF  LI  C+
Sbjct: 544  GCAWTGKQLISMLLPRGFDHECPSSDVYIRDGELI-SSEGSFWLRDTDGNLFQSLIKQCQ 602

Query: 1943 DEVIGILYAAQEVLCEWLSVRGLSVSLSDLYLASDPYSRENMIHEVSCGLQEAEYLSDIE 2122
            D+V+  LY AQEVLCEWLS+RGLSVSLSDLYL  D  SRENM+ EV  GLQ+A+   +++
Sbjct: 603  DQVLDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMK 662

Query: 2123 LTMVDLNKNFLVECTEEKEKIGDSGVDHMSIPQQKSAALSQASVSAFKRVFSDIQYLAYQ 2302
              MVD  ++FL    E+++   +  V+H+   +Q+SAALSQASV AFK VF DIQ L Y+
Sbjct: 663  QFMVDSCRDFLASIDEDEQYSVNFDVEHLCHEKQRSAALSQASVDAFKHVFRDIQTLGYK 722

Query: 2303 YATKHNSFLAMLKAGSKGNLQKLVQHSMCLGLQHSVAPLSFTLPPWLSCAAWNDHKISHG 2482
            YA+K N+ +AM K+GSKGNL K+VQHSMCLGLQHS+ PLSF +P  LSC AWN  K  + 
Sbjct: 723  YASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRMPLQLSCDAWNKQKAENA 782

Query: 2483 CSGYSESYIPFAMVENSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTLTRKLTFFMRDI 2662
                + SYIP A+VE  FLTGLNPLECFVHS+T+R+ SFS +AD+ GTLTR+L FFMRD+
Sbjct: 783  VE-CARSYIPSAVVEGCFLTGLNPLECFVHSVTSRESSFSDNADLPGTLTRRLMFFMRDV 841

Query: 2663 CIAYDGTVRNAYGNQIVQFSYN--------TQGTCA----HDILGGHPVGXXXXXXXXXX 2806
              AYDG+VR+AYGNQ++QFSYN        T GT      +D + G PVG          
Sbjct: 842  HAAYDGSVRSAYGNQLIQFSYNIDEGRSAETYGTAKIVDNYDGMAGKPVGSLAACSISEA 901

Query: 2807 XXXXLDQPISALESSPLLNLKKILDCGVKRSNGEKTASIFLSKQLGKLSHGFEHGALEVK 2986
                LDQPIS LE SPLLNLK +L+CG+K+SN  K+ S+FLS++LG+  HGFE+GAL+V+
Sbjct: 902  AYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYGALKVQ 961

Query: 2987 DHLQRLKLGEIVSHVMISYSQELCGPAHVSPWICHFHVSKETVKRRRVRMHSIVDALHAT 3166
            DHL+RL   +IVS   I +S +       SPW+CHFHV KE +K+R + + SI++ L+  
Sbjct: 962  DHLERLLFSDIVSVSRIIFSSQSESKTCFSPWVCHFHVYKEIMKKRNLNVDSIINILNG- 1020

Query: 3167 WETVKVKVKLRSKLDLPELQITINMGCSLAVKQNETDSNSNICIIVSVVEKSRRLSSQLD 3346
                    + +S  +LP +QI+    CS+A   N  +    +CI V++VE+S+  S++L 
Sbjct: 1021 --------RCKSNTNLPNVQISCK-SCSIA--DNHREKEETLCITVTIVERSKNSSTRLA 1069

Query: 3347 VIRDIVIPSLLGSVIKGFPEFKKIDISWKDCPNVAXXXXXXXXXLYLRVYMSENCDRAKF 3526
             I+D++IP LL +V+KG  E  K+DI WKD P ++         LYLRV MS + ++ + 
Sbjct: 1070 TIQDLMIPFLLETVLKGLMEINKVDILWKDWPRISKTHNQPYGELYLRVSMSADSEKTRL 1129

Query: 3527 WSILVDRCLRISDVIDWERSHPDDIRDMTSAYGIDAAANHFI 3652
            W++L+D CL I D+IDW  S PD++RD + AYGIDA    F+
Sbjct: 1130 WNLLMDYCLPIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFL 1171


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score = 1137 bits (2942), Expect = 0.0
 Identities = 597/1184 (50%), Positives = 793/1184 (66%), Gaps = 30/1184 (2%)
 Frame = +2

Query: 194  PLAILRSMTFSILSEADAAKKSAKIIGAVSEVTDPALGLPNLKNQCFTCGSRDRKECEGH 373
            P  +L  + FS+ ++ D    +   + A +EV+DP LGLPN   QC TCG+   K CEGH
Sbjct: 12   PSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKFCEGH 71

Query: 374  FGLINFPFTILNPYFLPEVAQILNKLCPACKSVRLD---KVKRSESTSTLPNDCKYCNPG 544
            FG+I FP+TI++PYFL EVAQ+LNK+CP CKSVR +   KV+   S    P  C+YC  G
Sbjct: 72   FGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTSDYNRPKGCRYCF-G 130

Query: 545  RSKDLYPLIKFRVSSKDVFAKTAITAEAIERPSSN---RTPKAKIASDYWDIIPSDDHQD 715
              KD YP ++F++S+ D+F K+ I  E  E  S     R  K  + SDYWD IP D+ Q+
Sbjct: 131  SLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQE 190

Query: 716  EGSLSSNKRVLSHAQVYHILKDVDPRVLDSFSNRKNSILLNCFLLTPNCHRVTEF----- 880
            E     N+++L+HAQV+++LKD+DP+ L  F    +S+ LN F +TPN HRVTE      
Sbjct: 191  ESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFS 250

Query: 881  -GEHIMFDITTKHYKKLIDFKGTANELSTRVLERIRVSKVHSEXXXXXXXXXXXXXXXXX 1057
             G+ ++FD  T+ YKK++DF+GTANEL +RVL+ +++SK                     
Sbjct: 251  NGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYNIFVFCLNHVNYYQKKIK 310

Query: 1058 XXXX---GLKYIKELLLGKRSDFTFRMVVVGDPYIKVGEIGVPRHIAEKLRVSEHVNKWN 1228
                   GL++IK+++LGKRSD  FRMVVVGDP I++ EIG+P H+AE+L++SEH++ WN
Sbjct: 311  DTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWN 370

Query: 1229 FDKLERYVTLMLXXXXXXXXXXXXXXXKLTIVDKLYNGDVLYRPILDGDVVLINRPPSIH 1408
              KL     L L               ++  V +L  GD +YRP+ DGD+VL+NRPPSIH
Sbjct: 371  MKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIH 430

Query: 1409 QHSILSLCVRILPISSALSINPLVCSPLRGDFDGDCLHGYVPQSVDSRVELHELVALDKQ 1588
            QHS+++L V++LP+S+ LS+NPL CSP RGDFDGDCLHGYVPQS+++RVE+ ELV+LDKQ
Sbjct: 431  QHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQ 490

Query: 1589 LLNGQSGRNLLSLSHDSLTAAHLILEDGVTLNKLQMQQLQMFCSFQLQFPAITKTQE-NT 1765
            L NGQSGRNLLSLSHDSLTAAHLILEDGV+LN  QMQQLQM    QL  PAI K+     
Sbjct: 491  LTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRN 550

Query: 1766 CFWTGKQLFSQLMPPGFDYVFRSNGVCITKGEIVTSSGGSTWLRDTDGNLFNGLINYCKD 1945
            C WTGKQLFS L+PP FDY   S+ V I KGE++ SS GS WLRD+  NLF  LI +C+ 
Sbjct: 551  CAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELI-SSEGSYWLRDSGRNLFQALIEHCEG 609

Query: 1946 EVIGILYAAQEVLCEWLSVRGLSVSLSDLYLASDPYSRENMIHEVSCGLQEAEYLSDIEL 2125
            + +  L  AQ VLCEWLS RGLSVSLSDLYL+ D YS ENM+ ++ CGLQEAE   +++ 
Sbjct: 610  KTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQ 669

Query: 2126 TMVDLNKNFLVECTEEKEKIGDSGVDHMSIPQQKSAALSQASVSAFKRVFSDIQYLAYQY 2305
             MVD +K  L+   E+ + +    V+ +   +QKSAAL+QASV AFK+VF DIQ L Y+Y
Sbjct: 670  LMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQNLVYKY 729

Query: 2306 ATKHNSFLAMLKAGSKGNLQKLVQHSMCLGLQHSVAPLSFTLPPWLSCAAWNDHKI---- 2473
            + K NS L M KAGSKGNL KLVQHSMCLGLQHS+  LSF+LP  LSCAAWN  K+    
Sbjct: 730  SGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQKMPRYI 789

Query: 2474 -SHGCSGYSESYIPFAMVENSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTLTRKLTFF 2650
               G    ++S+IP+A+VENSFL+GLNP ECF HS+TNRD SFS +A+V GTLTRKLTF 
Sbjct: 790  QKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFL 849

Query: 2651 MRDICIAYDGTVRNAYGNQIVQFSYNTQGTCAHDI---------LGGHPVGXXXXXXXXX 2803
            MRDI  AYDGTVRNAYGNQ+VQF Y+     +            +GGHPVG         
Sbjct: 850  MRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESENNNRDRGIGGHPVGSLAACAISE 909

Query: 2804 XXXXXLDQPISALESSPLLNLKKILDCGVKRSNGEKTASIFLSKQLGKLSHGFEHGALEV 2983
                 LDQPIS LE+SPLLNLK++L+CG KR++ ++T S+FLS++L K S+GFE+GAL V
Sbjct: 910  AAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGV 969

Query: 2984 KDHLQRLKLGEIVSHVMISYSQELCGPAHVSPWICHFHVSKETVKRRRVRMHSIVDALHA 3163
            K+HL+R+   +IVS VMI +S       H SPW+CHFHV KE +K+RR++M+S++ +L+ 
Sbjct: 970  KNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNM 1029

Query: 3164 TWETVKVKVKLRSKLDLPELQITINMGCSLAVKQNETDSNSNICIIVSVVEKSRRLSSQL 3343
              ++++ +     +++LP LQI I   C LA   + T+    +C+ V++ E ++    QL
Sbjct: 1030 RCDSMRQE----GRMNLPSLQI-ITQDCPLA--DSLTEDGDTVCLTVTIAENTKNSFLQL 1082

Query: 3344 DVIRDIVIPSLLGSVIKGFPEFKKIDISWKDCPNVAXXXXXXXXXLYLRVYMSENCDRAK 3523
            D I+D++I  LLG+VI+GF E  ++DI+W D P V          LYLRV MS     ++
Sbjct: 1083 DFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKV-PKPRCSHGELYLRVTMSGE-GNSR 1140

Query: 3524 FWSILVDRCLRISDVIDWERSHPDDIRDMTSAYGIDAAANHFIN 3655
            FW+ L++ CL I D+IDW RSHPD+   +  AYGID+   +F+N
Sbjct: 1141 FWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLN 1184


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score = 1106 bits (2860), Expect = 0.0
 Identities = 596/1222 (48%), Positives = 783/1222 (64%), Gaps = 68/1222 (5%)
 Frame = +2

Query: 194  PLAILRSMTFSILSEADAAKKSAKIIGAVSEVTDPALGLPNLKNQCFTCGSRDRKECEG- 370
            P A++  M F +L+EA+  K S   I AVSEVTDP LGLPN  +QC TCGSRD K CEG 
Sbjct: 12   PSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNPSSQCSTCGSRDLKSCEGI 71

Query: 371  ----------------------------HFGLINFPFTILNPYFLPEVAQILNKLCPACK 466
                                        HFG+INFP+TI++PYFL EV QILNK+CP CK
Sbjct: 72   VDVDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEVVQILNKICPGCK 131

Query: 467  SVRLDKVKRS-ESTSTLPNDCKYCNPGRSKDLYPLIKFRVSSKDVFAKTAITAEAIERPS 643
            S+RL K        +     CKYC  G S   YP +KF+VSSK++F KTAI AE  E  S
Sbjct: 132  SIRLAKATELITKENPQRKGCKYC-AGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLS 190

Query: 644  SNRTPKAK--IASDYWDIIPSDDHQDEGSLSS--NKRVLSHAQVYHILKDVDPRVLDSFS 811
                   K  +A+DYWDI P D+ ++E   ++  N+RVLSH+QV H+LKDVDP  +    
Sbjct: 191  KKPQKGFKKILAADYWDIFPKDEQEEEEETNAKPNRRVLSHSQVRHMLKDVDPNFIKLSI 250

Query: 812  NRKNSILLNCFLLTPNCHRVTEF------GEHIMFDITTKHYKKLIDFKGTANELSTRVL 973
             + ++I LNCF +TPN HRVTE       G+ ++FD  T+ YKK++DF+G AN LS  V+
Sbjct: 251  LKTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIFDERTRAYKKMVDFRGVANTLSFHVM 310

Query: 974  ERIRVSKVHSEXXXXXXXXXXXXXXXXXXXXX--GLKYIKELLLGKRSDFTFRMVVVGDP 1147
            + ++ SK++ +                       GL++IK+++LGKR+D +FRMV+VGDP
Sbjct: 311  DCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVVLGKRNDHSFRMVIVGDP 370

Query: 1148 YIKVGEIGVPRHIAEKLRVSEHVNKWNFDKLERYVTLMLXXXXXXXXXXXXXXXKLTIVD 1327
            ++++ EIG+P HIAE+L++SE +  WN++KL                       ++  + 
Sbjct: 371  HLQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRHMK 430

Query: 1328 KLYNGDVLYRPILDGDVVLINRPPSIHQHSILSLCVRILPISSALSINPLVCSPLRGDFD 1507
            +L  GD++YRP+ DGD VLINRPPSIHQHS+++L V++LP+ S L+INPL C P R DFD
Sbjct: 431  ELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVPSVLAINPLCCPPFRADFD 490

Query: 1508 GDCLHGYVPQSVDSRVELHELVALDKQLLNGQSGRNLLSLSHDSLTAAHLILEDGVTLNK 1687
            GDCLHGYVPQSVD+RVEL ELV+LDKQL N QSGRNLLSLS DSLTAAHL+LED V L+ 
Sbjct: 491  GDCLHGYVPQSVDTRVELTELVSLDKQLTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSS 550

Query: 1688 LQMQQLQMFCSFQLQFPAITKTQENTCFWTGKQLFSQLMPPGFDYVFRSNGVCITKGEIV 1867
             ++QQLQMF   +   PA+     N   WTGKQL S L+P GFD+ F S  VCI  G++V
Sbjct: 551  FELQQLQMFRPERFLLPAVKAPSANALVWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLV 610

Query: 1868 TSSGGSTWLRDTDGNLFNGLINYCKDEVIGILYAAQEVLCEWLSVRGLSVSLSDLYLASD 2047
             SS GS WL DTDGNLF  L+ +C  +V+  LYAAQ VLCEWLS+RGLSVSLSDLYL  D
Sbjct: 611  -SSEGSFWLWDTDGNLFQSLVKHCHGQVLDFLYAAQRVLCEWLSMRGLSVSLSDLYLCPD 669

Query: 2048 PYSRENMIHEVSCGLQEAEYLSDIELTMVDLNKNFLV-----------------ECTEEK 2176
              SR+NM+ E+  GLQ+A+Y  +++  MVD  ++FL                   C+EE 
Sbjct: 670  SNSRKNMMDEIWYGLQDADYACNLKHLMVDSCRDFLTGNNEEDQCNVERLRFLSGCSEED 729

Query: 2177 EKIGDSGVDHMSIPQQKSAALSQASVSAFKRVFSDIQYLAYQYATKHNSFLAMLKAGSKG 2356
              +     + +   +Q+SAALSQ+SV AF+ VF DIQ L Y+YA++ NSFLAM KAGSKG
Sbjct: 730  YCVMAFDGERLCYEKQRSAALSQSSVDAFRLVFRDIQSLVYKYASQDNSFLAMFKAGSKG 789

Query: 2357 NLQKLVQHSMCLGLQHSVAPLSFTLPPWLSCAAWNDHKISHGCSGYSESYIPFAMVENSF 2536
            NL KLVQHSMCLGLQH++A LSF +P  LSCA WN  K        ++ YIP A+VE SF
Sbjct: 790  NLLKLVQHSMCLGLQHALASLSFRIPHQLSCAGWNKQKADDATES-AKRYIPHAVVEGSF 848

Query: 2537 LTGLNPLECFVHSLTNRDGSFSGHADVSGTLTRKLTFFMRDICIAYDGTVRNAYGNQIVQ 2716
            L+GLNP+ECFVHS+T+RD SFS +AD+ GTL R++ FFMRD+  AYDGTVRNAYGNQ+VQ
Sbjct: 849  LSGLNPIECFVHSVTSRDSSFSDNADLPGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQ 908

Query: 2717 FSYNTQGTCA---------HDILGGHPVGXXXXXXXXXXXXXXLDQPISALESSPLLNLK 2869
            FSYN                D + G PVG              LDQPIS LE SPLLNLK
Sbjct: 909  FSYNIDDMDPSGSVDEINNSDGIAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLK 968

Query: 2870 KILDCGVKRSNGEKTASIFLSKQLGKLSHGFEHGALEVKDHLQRLKLGEIVSHVMISYSQ 3049
             +L+CG+KR++  +T S+FLS++LG+  HGFE+ ALEV++HL+RL   +IVS V I +S 
Sbjct: 969  NVLECGLKRNSAHQTMSLFLSEKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSP 1028

Query: 3050 ELCGPAHVSPWICHFHVSKETVKRRRVRMHSIVDALHATWETVKVKVKLRSKLDLPELQI 3229
            +  G  H SPW+CHFHV KE VK+R +++H I+DAL         + + +SK   P++QI
Sbjct: 1029 QSDGRMHFSPWVCHFHVYKEIVKKRSLKVHYIIDAL---------EKQCKSKTRFPKVQI 1079

Query: 3230 TINMGCSLAVKQNETDSNSNICIIVSVVEKSRRLSSQLDVIRDIVIPSLLGSVIKGFPEF 3409
            T +  C++A    E       CI V++VE S+    +L+ I+D++IP LL +VIKGF E 
Sbjct: 1080 T-SRYCTVADTWKE--KKETFCITVTIVETSKNEFIELETIQDLMIPFLLETVIKGFMEI 1136

Query: 3410 KKIDISWKDCPNVAXXXXXXXXXLYLRVYMSENCDRAKFWSILVDRCLRISDVIDWERSH 3589
            +K+DI W D P +          L+LRV+MS   D+ + W+ L+D CL I D+IDW RSH
Sbjct: 1137 QKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDLIDWARSH 1196

Query: 3590 PDDIRDMTSAYGIDAAANHFIN 3655
            PD+I +   AYGIDA    F+N
Sbjct: 1197 PDNIHECCLAYGIDAGWKFFLN 1218


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score = 1077 bits (2785), Expect = 0.0
 Identities = 586/1185 (49%), Positives = 763/1185 (64%), Gaps = 50/1185 (4%)
 Frame = +2

Query: 251  KKSAKIIGAVSEVTDPALGLPNLKNQCFTCGSRDRKECEGHFGLINFPFTILNPYFLPEV 430
            K SA  I A  +VT   LGLPN    C TCGS+DRK CEGHFG I FPFTIL+PYF+ E+
Sbjct: 182  KISALEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEI 241

Query: 431  AQILNKLCPACKSVRLD-KVKRSEST---STLPNDCKYCNPGRSKDLYPLIKFRVSSKDV 598
            A+IL K+CPACKS+R + +VKR++S    +  P  CKYC  G     YP +KFRVSS D 
Sbjct: 242  AEILQKICPACKSIRQEIRVKRAKSLLGYNNQPKGCKYCC-GNGMGRYPAMKFRVSSNDF 300

Query: 599  FAKTAITAEAIERPSSNRTPKAK-IASDYWDIIPSDDHQDEGSLSSNKRVLSHAQVYHIL 775
            F +TAI  E  +   + +    + + +DYWD I  D  Q+E  +  N++VLS  QV ++L
Sbjct: 301  FRRTAIIVEVNDISLNKKRNLGRGLPADYWDFILGDVQQEENHV--NRKVLSPVQVENLL 358

Query: 776  KDVDPRVLDSFSNRKNSILLNCFLLTPNCHRVTEF------GEHIMFDITTKHYKKLIDF 937
              VDP  ++ F    + + L+CFL+ PNCHRVTE       G  + FD  T+  KKL+DF
Sbjct: 359  SGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDF 418

Query: 938  KGTANELSTRVLERIRVSKVHSEXXXXXXXXXXXXXXXXXXXXX-------GLKYIKELL 1096
            +GTANELS+RVL+ +R SK                                GL+++K+++
Sbjct: 419  RGTANELSSRVLDCLRFSKASFSVINPDRTPVNIFTELQQRKVGENACNSSGLRWMKDVV 478

Query: 1097 LGKRSDFTFRMVVVGDPYIKVGEIGVPRHIAEKLRVSEHVNKWNFDKLERYVTLMLXXXX 1276
            LGKR+D TFR VVVGDP +++ EIG+P  IAE L+VSE+VN+ N   L     L L    
Sbjct: 479  LGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEKG 538

Query: 1277 XXXXXXXXXXXKLTIVDKLYNGDVLYRPILDGDVVLINRPPSIHQHSILSLCVRILPISS 1456
                        L   + L  GD+ YRP++DGD VLINRPPSIHQHS+++L VR+LPISS
Sbjct: 539  QINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISS 598

Query: 1457 ALSINPLVCSPLRGDFDGDCLHGYVPQSVDSRVELHELVALDKQLLNGQSGRNLLSLSHD 1636
             +SINP+ CSPLRGDFDGDCLHGY+PQSV +RVEL+ELVALD+QL+NGQSG NLLSLS D
Sbjct: 599  VVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGGNLLSLSQD 658

Query: 1637 SLTAAHLILEDGVTLNKLQMQQLQMFCSFQLQFPAITKT-QENTCFWTGKQLFSQLMPPG 1813
            SLTAAHL+LEDGV  N  Q+QQL+M C+ +L  PAI K    NT FW+GKQLFS L+P  
Sbjct: 659  SLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPSSNTPFWSGKQLFSMLLPSK 718

Query: 1814 FDYVFRSNGVCITKGEIVTSSGGSTWLRDTDGNLFNGLINYCKDEVIGILYAAQEVLCEW 1993
            FDY F SN V +  GE+++ S  S WLRD++ N+F  L+ + + +++ +L+ AQ+ LCEW
Sbjct: 719  FDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKILDVLHGAQKALCEW 778

Query: 1994 LSVRGLSVSLSDLYLASDPYSRENMIHEVSCGLQEAEYLSDIELTMVDLNKNFLVECTEE 2173
            LS+ G SVSLSDLYL+SD Y+R+NM+ E+S GL+ AE   D    +VD   +FL    EE
Sbjct: 779  LSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLLVDHYSDFLSASPEE 838

Query: 2174 KEKIGDSGVDHMSIPQQKSAALSQASVSAFKRVFSDIQYLAYQYATKHNSFLAMLKAGSK 2353
             EK     VD ++  +Q SAA SQASV AF+ VF +IQ LA ++A K NSFLAM KAGSK
Sbjct: 839  NEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHACKDNSFLAMFKAGSK 898

Query: 2354 GNLQKLVQHSMCLGLQHSVAPLSFTLPPWLSCAAWNDHKISHGCSGYS------ESYIPF 2515
            GNL KLVQHSMCLGLQHS+  LS+ +P  LSCA WN  K  H     S      +SYI  
Sbjct: 899  GNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSSDTLEPKQSYIAH 958

Query: 2516 AMVENSFLTGLNPLECFVHSLTNRDGSFSGHADVSGTLTRKLTFFMRDICIAYDGTVRNA 2695
            A+VE+SFLTGLNPLECFVHS+TNRD SFS +AD+ GTLTR+L FFMRD+  AYDGTVRN 
Sbjct: 959  AVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNL 1018

Query: 2696 YGNQIVQFSYNTQ--GTC----AHDILGGHPVGXXXXXXXXXXXXXXLDQPISALESSPL 2857
            YGNQ++QFSY+ +   +C      DI+GG PVG              L QPIS LE+SPL
Sbjct: 1019 YGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPL 1078

Query: 2858 LNLKKILDCGVKRSNGEKTASIFLSKQLGKLSHGFEHGALEVKDHLQRLKLGEIVSHVMI 3037
            LNLK +L+CG ++  G++T S+FLS+++GK  +GFE+ ALEVK++L+R     IVS VMI
Sbjct: 1079 LNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFSNIVSTVMI 1138

Query: 3038 SYSQELCGPAHVSPWICHFHVSKETVKRRRVRMHSIVDALHATWETVKVKVKLRSKLDLP 3217
             ++ + C     SPW+CHFH+ KE V RR++ +HSI+D+L+  +++     +  SK+ LP
Sbjct: 1139 IFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDS----FRRESKVILP 1194

Query: 3218 ELQITINMGCSLAVKQNET-------------------DSNSNICIIVSVVEKSRRLSSQ 3340
             L+I+   G  +  K+ +T                   + +   CI V+VVE S+  S Q
Sbjct: 1195 SLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDCITVAVVEDSKN-SVQ 1253

Query: 3341 LDVIRDIVIPSLLGSVIKGFPEFKKIDISWKDCPNVAXXXXXXXXXLYLRVYMSENCDRA 3520
            LD +R  +IP LL + IKGF E KK+DI WKD P V          LYLRV MS   D  
Sbjct: 1254 LDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRVTMSSGNDNG 1313

Query: 3521 KFWSILVDRCLRISDVIDWERSHPDDIRDMTSAYGIDAAANHFIN 3655
             FW  L++ C RI  +IDW RSHPD+I    SA+GIDA   H+ +
Sbjct: 1314 TFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFH 1358