BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00010781
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   338   9e-91
gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein pre...   332   1e-88
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   330   3e-88
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c...   329   5e-88
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri...   310   3e-82

>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
           Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
           29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  338 bits (868), Expect = 9e-91
 Identities = 202/294 (68%), Positives = 227/294 (77%), Gaps = 3/294 (1%)
 Frame = -2

Query: 885 MASSATSLHFLSFAPQTALSLSKPNGTIHLNSLSIPSAPPSKLCLSFASSISPRVEPFFS 706
           MASSA+SLHFLS  PQT L L KP  T    SLS  S PPS L LS +SS S      FS
Sbjct: 1   MASSASSLHFLSLTPQT-LPLPKP--TSQTTSLSFFSLPPSSLNLSLSSSSS-----CFS 52

Query: 705 GSRFVLFTRRVAASSDYDQIGVLDEEEVASDEASNYKEEDEPSFSPDQQLFVGNLPFSVD 526
            SRFV    R    SD+DQI     E+V   E  +   E+E +FSPD ++FVGNLPFS D
Sbjct: 53  -SRFV----RKVTLSDFDQI-----EDV---EDGDDGVEEERNFSPDLKIFVGNLPFSAD 99

Query: 525 SAALANLFERAGSVEMVEVIYDKHTGRSRGFGFVTMSSAEEVTAATQQFNGYELEGRALR 346
           SAALA LFERAG+VEMVEVIYDK TGRSRGFGFVTMSS EEV AA QQFNGYEL+GRALR
Sbjct: 100 SAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALR 159

Query: 345 VNSGPPPARKE-GSFR-GARGGASIANTNRLYVGNLAWGVDNLALETLFSEQGKVVEARV 172
           VNSGPPP ++E  SFR G+RGG S  ++NR+YVGNLAWGVD  ALETLFSEQGKVV+A+V
Sbjct: 160 VNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKV 219

Query: 171 VYDRESGRSRGFGFVTYSSADEVNNAIDLLNGVDLNGRAIRVTPAESR-ARRDF 13
           VYDR+SGRSRGFGFVTYSSA+EVNNAI+ L+GVDLNGRAIRV+PAE+R  RR F
Sbjct: 220 VYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273


>gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
          Length = 289

 Score =  332 bits (850), Expect = 1e-88
 Identities = 193/304 (63%), Positives = 223/304 (73%), Gaps = 13/304 (4%)
 Frame = -2

Query: 885 MASSATSLHFLSFAPQTALSLSKPNGTIHLNSLSIPSAPPSKLCLSFASSISPRVEPFFS 706
           MASS++SLHFLS  PQT      P  T    S+S  S PPS L LS +SS +PR    F 
Sbjct: 1   MASSSSSLHFLSLTPQTL-----PKPTSQTTSISFFSLPPSSLNLSLSSSSTPRN---FE 52

Query: 705 GSRFVLFTRRVAASSDYDQI-----GVLDEEEVA-SDEASNYKEEDEPSFSPDQQLFVGN 544
            SRFV    R    SD+DQI     G  DEEE   SDE ++Y+E +    +PD ++FVGN
Sbjct: 53  SSRFV----RKVTLSDFDQIEEVEAGDDDEEEGGLSDEGASYEERNA---NPDLKIFVGN 105

Query: 543 LPFSVDSAALANLFERAGSVEMVEVIYDKHTGRSRGFGFVTMSSAEEVTAATQQFNGYEL 364
           LPFSVDSAALA LFERAG VEMVEVIYDK TGRSRGFGFVTMSS E V AA QQFNGYE+
Sbjct: 106 LPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEI 165

Query: 363 EGRALRVNSGPPPARKEGSF------RGARGGASIANTNRLYVGNLAWGVDNLALETLFS 202
           +GRALRVNSGP P ++E SF      +G RGG S+ ++NR+YVGNLAW VD   LETLFS
Sbjct: 166 DGRALRVNSGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFS 225

Query: 201 EQGKVVEARVVYDRESGRSRGFGFVTYSSADEVNNAIDLLNGVDLNGRAIRVTPAESR-A 25
           EQGKVV+A+VVYDR+SGRSRGFGFVTYSSA EVN+AI+ L+GVDL GRAIRV+PAE+R  
Sbjct: 226 EQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVSPAEARPP 285

Query: 24  RRDF 13
           RR F
Sbjct: 286 RRQF 289


>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
           vinifera]
          Length = 288

 Score =  330 bits (846), Expect = 3e-88
 Identities = 188/305 (61%), Positives = 223/305 (73%), Gaps = 16/305 (5%)
 Frame = -2

Query: 879 SSATSLHFLSFAPQTALSLSKPNGTIHLNSLSIPSAPPSKLCLSFASSISPRVEPFFS-G 703
           +SA+SL   S +    L++SKP     ++  S+P +  S    S + S+SP    F +  
Sbjct: 2   ASASSLVLPSLSLPKTLAISKPTS---VSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLS 58

Query: 702 SRFVLFTRRVAASSDYDQIGVLDEEEVASDEASNYKEEDEPSFSPDQQLFVGNLPFSVDS 523
           SRFV   R VA SSDY+Q     +E+V SDE        EPSFSPD +LFVGNLPF+VDS
Sbjct: 59  SRFV---RNVAVSSDYEQ-----DEDVLSDEG-------EPSFSPDLKLFVGNLPFNVDS 103

Query: 522 AALANLFERAGSVEMVEVIYDKHTGRSRGFGFVTMSSAEEVTAATQQFNGYELEGRALRV 343
           A LA LFE+AG+VEMVEVIYDK TGRSRGFGFVTMS+ EEV AA QQFNGYELEGR LRV
Sbjct: 104 AGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRV 163

Query: 342 NSGPPPARKEGS---------------FRGARGGASIANTNRLYVGNLAWGVDNLALETL 208
           NSGPPPAR+E S               FRG RGGA++ +TNR+YVGNL+WGVD+LALETL
Sbjct: 164 NSGPPPARRENSNFRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETL 223

Query: 207 FSEQGKVVEARVVYDRESGRSRGFGFVTYSSADEVNNAIDLLNGVDLNGRAIRVTPAESR 28
           FSEQGKV EARV+YDRE+GRSRGFGFVTY+SA+EVN AI+ L+GVDLNGR+IRVT AE+R
Sbjct: 224 FSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEAR 283

Query: 27  ARRDF 13
            RR F
Sbjct: 284 PRRQF 288


>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
           Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
           RNA binding protein 30 [Nicotiana plumbaginifolia]
          Length = 279

 Score =  329 bits (844), Expect = 5e-88
 Identities = 199/300 (66%), Positives = 223/300 (74%), Gaps = 9/300 (3%)
 Frame = -2

Query: 885 MASSATSLHFLSFAPQTALSLSKPNGTIHLNSLSIPSAPPSKLCLSFASSISPRVEPFFS 706
           MASSA+SLHFLS  PQT L L KP  T    SLS  S PPS L LS +S  S      FS
Sbjct: 1   MASSASSLHFLSLTPQTLL-LPKP--TSQTTSLSFFSLPPSSLNLSLSSPSS-----CFS 52

Query: 705 GSRFVLFTRRVAASSDYDQIGVLDEEEVASDEASNYKEEDEPSFSPDQQLFVGNLPFSVD 526
            SRFV    R     D+DQI    E+    DE      E+E +FSPD ++FVGNL FS D
Sbjct: 53  -SRFV----RKVTLPDFDQI----EDVEDGDEGV----EEERNFSPDLKIFVGNLLFSAD 99

Query: 525 SAALANLFERAGSVEMVEVIYDKHTGRSRGFGFVTMSSAEEVTAATQQFNGYELEGRALR 346
           SAALA LFERAG+VEMVEVIYDK TGRSRGFGFVTMSS EEV AA QQFNGYEL+GRALR
Sbjct: 100 SAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALR 159

Query: 345 VNSGPPPARKE-GSFR-------GARGGASIANTNRLYVGNLAWGVDNLALETLFSEQGK 190
           VNSGPPP ++E  SFR       G+RGG S  ++NR+YVGNLAWGVD  ALETLFSEQGK
Sbjct: 160 VNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGK 219

Query: 189 VVEARVVYDRESGRSRGFGFVTYSSADEVNNAIDLLNGVDLNGRAIRVTPAESR-ARRDF 13
           VV+A+VVYDR+SGRSRGFGFVTYSSA+EVNNAI+ L+GVDLNGRAIRV+PAE+R  RR F
Sbjct: 220 VVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279


>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223541388|gb|EEF42939.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 280

 Score =  310 bits (794), Expect = 3e-82
 Identities = 182/294 (61%), Positives = 210/294 (71%), Gaps = 5/294 (1%)
 Frame = -2

Query: 879 SSATSLHFLSFAPQTALSLSKPNGTIHLNSLSIPSAPPSKLCLSFASSISPRVEPFFSGS 700
           +SA+SL   S  P+T LSL  PN  I L S  + + P S     F+S +  + +P+ S S
Sbjct: 4   ASASSLVLPSLNPKT-LSLCNPNKPISL-SFKLHAKPISIPSSLFSSFVPLQQQPYSSSS 61

Query: 699 RFVLFTRRVAASSDYDQIGVLDEEEVASDEASNYKEEDEPSFSPDQQLFVGNLPFSVDSA 520
           RFV     VA SS++ Q     EE+V+SD        DE SFS D +LFVGNLPF+VDSA
Sbjct: 62  RFV---PSVAISSEFGQ-----EEDVSSDG-------DESSFSQDLKLFVGNLPFNVDSA 106

Query: 519 ALANLFERAGSVEMVEVIYDKHTGRSRGFGFVTMSSAEEVTAATQQFNGYELEGRALRVN 340
            LA LFE AG+VEMVEVIYDK TGRSRGFGFVTMSS +EV AA QQFNGYELEGRALRVN
Sbjct: 107 QLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVN 166

Query: 339 SGPPPARKEG-----SFRGARGGASIANTNRLYVGNLAWGVDNLALETLFSEQGKVVEAR 175
           SGPPP R+        F G  GG      NRLYVGNL+W VDNLALE+ FSEQGKVV+A+
Sbjct: 167 SGPPPQRESSFSRSPRFGGGGGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGKVVDAK 226

Query: 174 VVYDRESGRSRGFGFVTYSSADEVNNAIDLLNGVDLNGRAIRVTPAESRARRDF 13
           VVYDRESGRSRGFGFVTYSSA+EV NAID LNG +L+GRAIRV+ AE+R RR F
Sbjct: 227 VVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSVAEARPRRQF 280