BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00008583
         (1750 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...   194   8e-69
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   178   4e-66
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   180   7e-65
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   177   1e-60
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   169   2e-60

>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score =  194 bits (493), Expect(3) = 8e-69
 Identities = 96/223 (43%), Positives = 135/223 (60%)
 Frame = +3

Query: 1044 FGDKSRVQWL*EGDKNTNFFHATTTQRRRSNRMESLESSRGSLCATDMEMYEEMEAYFGN 1223
            +  KSR +W+  GDKNT+FFHA+    R    ++ L    G     +M      EAYF +
Sbjct: 338  WSQKSRAKWMHSGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSD 397

Query: 1224 FFKTTEPKNVEKALARIPSSISHTMNGRLIKPVAKEEIRKALFSMNPNKAPGLDGMTPFF 1403
             FK+T+P +           ++ +MN  LI  V+K EIR+A+F++  + APG+DG T FF
Sbjct: 398  LFKSTDPSSFVDLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFF 457

Query: 1404 FQKYWHIIHQDIFFAVQQFFISGWMLKSFNHTIISLIPKVLKADSIKQFRPISLCNVFYK 1583
            FQKYW II   +   +Q FF+ G+  KS+N T + L+PK  K D +   RPISLC+V YK
Sbjct: 458  FQKYWSIICLQVTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYK 517

Query: 1584 IISKILSERLKSALPQCISQNQSAFIPGRQILDNVVVAHEFIH 1712
            IISKI+  RL+  LP  +S NQSAF+  R I DN+++AHE +H
Sbjct: 518  IISKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIAHEVVH 560



 Score = 79.0 bits (193), Expect(3) = 8e-69
 Identities = 47/157 (29%), Positives = 80/157 (50%)
 Frame = +2

Query: 584  RDKEGFVEESLDRFFGSLEWLMQCPNASVTHILRQSSDHSLLILDTQPTYKKYRNRFYFD 763
            +  E +++  LDR FG+  W    P ++   + ++ SDH  +++    T ++YR  F FD
Sbjct: 186  KTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRGNFRFD 245

Query: 764  QRWAHKQGFESTVKEAWEQP*QGSWMFRVQSKIKKCRLAILKWTKSANTNSAEQIYTLKH 943
            +R  ++   + T+ +AW    Q +    V  K+K CR A+ +W K  N NS+ +I   + 
Sbjct: 246  KRLFNQPNVKETIVQAWNGS-QRNENLLVLDKLKHCRSALSRWKKENNINSSTRITQARA 304

Query: 944  QMEVMQEQEGSRDWRQWRELNNDLNAAYENEEMFWRQ 1054
             +E+ Q     R    +  L NDL  A  +EE+FW Q
Sbjct: 305  ALELEQSSGFPRADLVF-SLKNDLCKANHDEEVFWSQ 340



 Score = 37.0 bits (84), Expect(3) = 8e-69
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +3

Query: 342 VYANADYAIRQAQFAKLINKRENWGT*WFVGGNFNEILEGIEKS*GKKRPKSSFIKFKNF 521
           VY N  ++ +   + K+     N    W + G+FN IL   EK  G +R  SSF+ F + 
Sbjct: 106 VYGNPAFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDM 165

Query: 522 VHTMGMKDLGFKGR--RWHGK 578
           + +  M +L   G    W GK
Sbjct: 166 LDSCDMLELPSIGNPFTWGGK 186


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  178 bits (452), Expect(3) = 4e-66
 Identities = 89/221 (40%), Positives = 132/221 (59%)
 Frame = +3

Query: 1056 SRVQWL*EGDKNTNFFHATTTQRRRSNRMESLESSRGSLCATDMEMYEEMEAYFGNFFKT 1235
            SRVQWL  GD+N  +FHATT  RR  N +  +E   G     + ++   + +YF N F T
Sbjct: 281  SRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTT 340

Query: 1236 TEPKNVEKALARIPSSISHTMNGRLIKPVAKEEIRKALFSMNPNKAPGLDGMTPFFFQKY 1415
            +   +++     +   IS   N  LIK  +  EI++ALFS++ +KAPG DG +  FF  Y
Sbjct: 341  SNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAY 400

Query: 1416 WHIIHQDIFFAVQQFFISGWMLKSFNHTIISLIPKVLKADSIKQFRPISLCNVFYKIISK 1595
            W II  D+   ++ FF+   +    N T ++LIPK+     +  +RPI+LCNV YKI++K
Sbjct: 401  WDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAK 460

Query: 1596 ILSERLKSALPQCISQNQSAFIPGRQILDNVVVAHEFIHHI 1718
            IL+ RL+  L + IS +QSAF+PGR I DNV++ HE +H +
Sbjct: 461  ILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFL 501



 Score = 83.6 bits (205), Expect(3) = 4e-66
 Identities = 51/163 (31%), Positives = 79/163 (48%)
 Frame = +2

Query: 566  MAWENSRDKEGFVEESLDRFFGSLEWLMQCPNASVTHILRQSSDHSLLILDTQPTYKKYR 745
            ++W  +R    F++  LDR  G+  W    P +   ++  + SDH  L+        K  
Sbjct: 123  LSWRGTRYSH-FIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRS 181

Query: 746  NRFYFDQRWAHKQGFESTVKEAWEQP*QGSWMFRVQSKIKKCRLAILKWTKSANTNSAEQ 925
              F FD+R   K+   + VKE WE   Q S ++    KI +CR +I+KWTK  N+NSA+ 
Sbjct: 182  KPFRFDRRLREKEEIRALVKEVWELARQDSVLY----KISRCRQSIIKWTKEQNSNSAKA 237

Query: 926  IYTLKHQMEVMQEQEGSRDWRQWRELNNDLNAAYENEEMFWRQ 1054
            I   +  +E     +   D      +  +L AAY  EE+FW+Q
Sbjct: 238  IKKAQQALESALSAD-IPDPSLIGSITQELEAAYRQEELFWKQ 279



 Score = 39.3 bits (90), Expect(3) = 4e-66
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 423 WFVGGNFNEILEGIEKS*GKKRPKSSFIKFKNFVHTMGMKDLGFKGR--RWHG 575
           W + G+FN+IL+  EK  G  R +  F+ F++FV   G+ D+   G    W G
Sbjct: 75  WLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRG 127


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  180 bits (456), Expect(3) = 7e-65
 Identities = 90/227 (39%), Positives = 139/227 (61%)
 Frame = +3

Query: 1053 KSRVQWL*EGDKNTNFFHATTTQRRRSNRMESLESSRGSLCATDMEMYEEMEAYFGNFFK 1232
            KSR +W+  GD+NT FF+A+T  R+  NR++++  ++G     D  + +  E YF + F 
Sbjct: 701  KSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFT 760

Query: 1233 TTEPKNVEKALARIPSSISHTMNGRLIKPVAKEEIRKALFSMNPNKAPGLDGMTPFFFQK 1412
            TT+  + E+ ++ I   ++  MN  L++ V  +E+R A+F++  ++APG DG T  F+  
Sbjct: 761  TTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHH 820

Query: 1413 YWHIIHQDIFFAVQQFFISGWMLKSFNHTIISLIPKVLKADSIKQFRPISLCNVFYKIIS 1592
             W +I  D+   V+ FF S  M    N T I LIPK++    +  +RPISLC   YKIIS
Sbjct: 821  LWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIIS 880

Query: 1593 KILSERLKSALPQCISQNQSAFIPGRQILDNVVVAHEFIHHINNMRK 1733
            KIL +RLK  L   IS +Q+AF+PG+ I DNV+VAHE +H + + R+
Sbjct: 881  KILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRE 927



 Score = 75.1 bits (183), Expect(3) = 7e-65
 Identities = 46/160 (28%), Positives = 77/160 (48%)
 Frame = +2

Query: 569  AWENSRDKEGFVEESLDRFFGSLEWLMQCPNASVTHILRQSSDHSLLILDTQPTYKKYRN 748
            +W   R  E  +E  LDR F + +W    P      +    SDH+ +I+D        R 
Sbjct: 542  SWVGKRQNET-IESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTKRG 600

Query: 749  RFYFDQRWAHKQGFESTVKEAWEQP*QGSWMFRVQSKIKKCRLAILKWTKSANTNSAEQI 928
            +F +D+R    + F  +V+  W +    S       K+  CR  + KW +   TN+AE+I
Sbjct: 601  QFRYDRRHFQFEDFVDSVQRGWNRGRSDS-HGGYYEKLHCCRQELAKWKRRTKTNTAEKI 659

Query: 929  YTLKHQMEVMQEQEGSRDWRQWRELNNDLNAAYENEEMFW 1048
             TLK++++   E++ +   +    L  DLN AY +EE++W
Sbjct: 660  ETLKYRVDA-AERDHTLPHQTILRLRQDLNQAYRDEELYW 698



 Score = 42.0 bits (97), Expect(3) = 7e-65
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 423 WFVGGNFNEILEGIEKS*GKKRPKSSFIKFKNFVHTMGMKDLGFKGR--RWHGK 578
           W + G+FNEIL   EK  G++R   S   F N ++   MKDL  KG    W GK
Sbjct: 493 WMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGK 546


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1229

 Score =  177 bits (448), Expect(3) = 1e-60
 Identities = 89/222 (40%), Positives = 131/222 (59%)
 Frame = +3

Query: 1053 KSRVQWL*EGDKNTNFFHATTTQRRRSNRMESLESSRGSLCATDMEMYEEMEAYFGNFFK 1232
            +SRV WL  GD+NT +FHA T  RR  NR+  +E   G     + ++ + +  YF   F 
Sbjct: 234  RSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFT 293

Query: 1233 TTEPKNVEKALARIPSSISHTMNGRLIKPVAKEEIRKALFSMNPNKAPGLDGMTPFFFQK 1412
            +    +       I   +S   N  L +    EE++ A+FS+N +KAPG DG T  F+  
Sbjct: 294  SESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHS 353

Query: 1413 YWHIIHQDIFFAVQQFFISGWMLKSFNHTIISLIPKVLKADSIKQFRPISLCNVFYKIIS 1592
            YWHII  D+   ++ FF S    +  N T I LIPK L    +  +RPI+LCN+FYKI++
Sbjct: 354  YWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVA 413

Query: 1593 KILSERLKSALPQCISQNQSAFIPGRQILDNVVVAHEFIHHI 1718
            KI+++R++  LP+ IS+NQSAF+PGR I DNV++ HE +H +
Sbjct: 414  KIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFL 455



 Score = 68.6 bits (166), Expect(3) = 1e-60
 Identities = 46/162 (28%), Positives = 70/162 (43%)
 Frame = +2

Query: 569  AWENSRDKEGFVEESLDRFFGSLEWLMQCPNASVTHILRQSSDHSLLILDTQPTYKKYRN 748
            +W   R  + FV + LDR   +  WL   P+    ++  + SDH  L++       K R 
Sbjct: 78   SWRGMR-YDWFVRQRLDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRG 136

Query: 749  RFYFDQRWAHKQGFESTVKEAWEQP*QGSWMFRVQSKIKKCRLAILKWTKSANTNSAEQI 928
            +F FD R        + ++E W      S    V +K+ +CR  I+ WT+  N NSAE I
Sbjct: 137  QFRFDNRLRDNDVVNALIQETWTNAGDAS----VLTKMNQCRREIINWTRLQNLNSAELI 192

Query: 929  YTLKHQMEVMQEQEGSRDWRQWRELNNDLNAAYENEEMFWRQ 1054
               +  +E     +          L   L  AY+ EE FW+Q
Sbjct: 193  EKTQKALEEALTADPPNP-TTIGALTATLEHAYKLEEQFWKQ 233



 Score = 37.4 bits (85), Expect(3) = 1e-60
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 444 NEILEGIEKS*GKKRPKSSFIKFKNFVHTMGMKDLGFKGR--RWHG 575
           NEIL+  EK  G  R + SFI F++F+   G+ DL + G    W G
Sbjct: 36  NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRG 81


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  169 bits (427), Expect(3) = 2e-60
 Identities = 85/226 (37%), Positives = 135/226 (59%)
 Frame = +3

Query: 1053 KSRVQWL*EGDKNTNFFHATTTQRRRSNRMESLESSRGSLCATDMEMYEEMEAYFGNFFK 1232
            +SRV WL  GD+N++FFH TT QRR+ N++  L+   G+   ++ ++  +   YF   ++
Sbjct: 948  RSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFLDYFTALYQ 1007

Query: 1233 TTEPKNVEKALARIPSSISHTMNGRLIKPVAKEEIRKALFSMNPNKAPGLDGMTPFFFQK 1412
            +  P+  E+ L  + ++++  MN  L  PV+  E++KA+F +   KAPG DG +  F+Q 
Sbjct: 1008 SNGPQQWEEVLDFVDTAVTAEMNKILSSPVSLLEVKKAVFDLGATKAPGPDGFSGIFYQN 1067

Query: 1413 YWHIIHQDIFFAVQQFFISGWMLKSFNHTIISLIPKVLKADSIKQFRPISLCNVFYKIIS 1592
             W  +   I  +  Q   S  +L+  N T ++LIPKV        +RPI+LCN  YKI++
Sbjct: 1068 QWEWVQSIIHESALQHQTSSSLLQVMNRTHLALIPKVKAPTHPSHYRPIALCNFSYKILT 1127

Query: 1593 KILSERLKSALPQCISQNQSAFIPGRQILDNVVVAHEFIHHINNMR 1730
            KI++ RL+  + + IS NQSAF+  RQI DNV++AHE  HH+   R
Sbjct: 1128 KIIASRLQPFMSELISDNQSAFVSNRQIQDNVIIAHEIYHHLKLTR 1173



 Score = 81.3 bits (199), Expect(3) = 2e-60
 Identities = 41/162 (25%), Positives = 71/162 (43%)
 Frame = +2

Query: 569  AWENSRDKEGFVEESLDRFFGSLEWLMQCPNASVTHILRQSSDHSLLILDTQPTYKKYRN 748
            +W   R    F++E LDR  G++ W    PN  + H+ +  SDH  L+LD+ P       
Sbjct: 786  SWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNPKMLNKTR 845

Query: 749  RFYFDQRWAHKQGFESTVKEAWEQP*QGSWMFRVQSKIKKCRLAILKWTKSANTNSAEQI 928
             F F+Q W   + +   ++ +W     GS M      +  C  A+  W+K   +N + Q+
Sbjct: 846  LFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQV 905

Query: 929  YTLKHQMEVMQEQEGSRDWRQWRELNNDLNAAYENEEMFWRQ 1054
              L   +E + +        Q   L + +   +  +EM+W Q
Sbjct: 906  ADLLSDIEKLHQSNPPDAHHQINILTDQVTKLWTQDEMYWHQ 947



 Score = 32.3 bits (72), Expect(3) = 2e-60
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 423 WFVGGNFNEILEGIEKS*GKKRPKSSFIKFKNFVHTMGMKDLGFKG 560
           W V G+FNE+L+  EK  G          F++F++   ++DL FKG
Sbjct: 737 WLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNNGHLRDLHFKG 782