BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00008553
         (1020 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    96   2e-24
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    94   7e-22
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    93   9e-22
gb|AAT38805.1| hypothetical protein SDM1_47t00008 [Solanum demis...   108   2e-21
gb|ABN05720.1| RNA-directed DNA polymerase (Reverse transcriptas...    83   1e-20

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 95.5 bits (236), Expect(2) = 2e-24
 Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 1/177 (0%)
 Frame = -3

Query: 817  YKVASGQKINCQKSAFYVSRYTLPSQVHFIQSHTGVHK*SLPFKYLGCPIAKGRMRIRNF 638
            Y +ASGQ IN +KS+ + S  T P   H + S   +   S P  YLG P    R + +  
Sbjct: 1315 YCIASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVSDPGTYLGLPTFWHRSKKKAL 1374

Query: 637  HFLVDRIDSKLKGWKNKSLSPGGRHVLVKHVLFTLSIYVFSSIQVLKAVIRAMET*MVEF 458
             F+ D I  K+KGWK  +LS  G+ VL+K V   +  Y     +    + + +   + +F
Sbjct: 1375 GFIKDSILRKVKGWKQATLSQAGKEVLIKAVATAIPAYPMGCFKFPSTLCKELNGILADF 1434

Query: 457  LSGVTPAEPRRTWRSWDLVAKPYS*NGLSLRRLKDVRNSFSYKLWWKLQQG-IGLWA 290
              G         W+SWD +A+P    G+  R L+D  NS   K  W+L Q    LWA
Sbjct: 1435 WWGNVDTRGIH-WKSWDFLARPKKDGGMGFRNLEDFNNSLLAKQAWRLHQNPFALWA 1490



 Score = 43.9 bits (102), Expect(2) = 2e-24
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = -1

Query: 999  FLKSGRGLKQRDPLSPFLFILVSEALSRELNALLSAGLFVP 877
            FL S RGL+Q DPLSPFLF+ V++ LSR +N +    L  P
Sbjct: 1236 FLPS-RGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTP 1275


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 94.4 bits (233), Expect(2) = 7e-22
 Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 1/178 (0%)
 Frame = -3

Query: 808  ASGQKINCQKSAFYVSRYTLPSQVHFIQSHTGVHK*SLPFKYLGCPIAKGRMRIRNFHFL 629
            ASGQK++ +KS  + S          I   +G+       KYLG PI + RM    F  +
Sbjct: 572  ASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEV 631

Query: 628  VDRIDSKLKGWKNKSLSPGGRHVLVKHVLFTLSIYVFSSIQVLKAVIRAMET*MVEFLSG 449
            ++R+ ++L GWK +SLS  GR  L K VL ++ ++V S+I +  + +  ++     FL G
Sbjct: 632  LERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWG 691

Query: 448  VTPAEPRRTWRSWDLVAKPYS*NGLSLRRLKDVRNSFSYKLWWK-LQQGIGLWALFVK 278
             T  + ++   SW  + KP +  G+ LR  +D+  +   K+ W+ LQ    LWA  V+
Sbjct: 692  STMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVR 749



 Score = 36.6 bits (83), Expect(2) = 7e-22
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -1

Query: 984 RGLKQRDPLSPFLFILVSEALSRELNALLSAGLFVPYA*P*GSHKATQALF 832
           RGL+Q DPLSP+LF+L  E L   + A +    + P A   G  K +   F
Sbjct: 494 RGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCF 544


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
            gi|7268307|emb|CAB78601.1| reverse transcriptase like
            protein [Arabidopsis thaliana]
          Length = 929

 Score = 92.8 bits (229), Expect(2) = 9e-22
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 3/186 (1%)
 Frame = -3

Query: 799  QKINCQKSAFYVSRYTLPSQVHFIQSHTGVHK*SLPFKYLGCPIAKGRMRIRNFHFLVDR 620
            QK++ +KS  + S          I + TG+       KYLG P+ + R+    F  +++R
Sbjct: 510  QKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLER 569

Query: 619  IDSKLKGWKNKSLSPGGRHVLVKHVLFTLSIYVFSSIQVLKAVIRAMET*MVEFLSGVTP 440
            + S+L GWK++SLS  GR  L K VL ++ I+  SSI +  +++  ++     FL G T 
Sbjct: 570  VSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTV 629

Query: 439  AEPRRTWRSWDLVAKPYS*NGLSLRRLKDVRNSFSYKLWWK-LQQGIGLWA--LFVKSYA 269
             + ++   SW  V +P +  GL LR  KD+  +   K+ W+ L   + LWA  L  K   
Sbjct: 630  EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKV 689

Query: 268  NGLHDS 251
              +HDS
Sbjct: 690  TDVHDS 695



 Score = 37.7 bits (86), Expect(2) = 9e-22
 Identities = 23/70 (32%), Positives = 37/70 (52%)
 Frame = -1

Query: 984 RGLKQRDPLSPFLFILVSEALSRELNALLSAGLFVPYA*P*GSHKATQALFDFWGAIRLL 805
           RGL+Q DP+SP+LF+L  E L  ++   +  G +   +   G  K +   F       +L
Sbjct: 446 RGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCF---ADDLIL 502

Query: 804 RAKRSIAKKV 775
            A+ S+A+KV
Sbjct: 503 FAEASVAQKV 512


>gb|AAT38805.1| hypothetical protein SDM1_47t00008 [Solanum demissum]
          Length = 1155

 Score =  108 bits (270), Expect = 2e-21
 Identities = 69/252 (27%), Positives = 114/252 (45%)
 Frame = -3

Query: 817  YKVASGQKINCQKSAFYVSRYTLPSQVHFIQSHTGVHK*SLPFKYLGCPIAKGRMRIRNF 638
            Y+  SGQ IN  KS F V+     + +  I+  T ++    P KYLGCP+  G+ +  +F
Sbjct: 627  YENTSGQLINKNKSCFSVANNAKQNFIAKIKLITCMNHQEFPIKYLGCPLISGKKKTSHF 686

Query: 637  HFLVDRIDSKLKGWKNKSLSPGGRHVLVKHVLFTLSIYVFSSIQVLKAVIRAMET*MVEF 458
            + LV  I +++KGW NK LS GGR VL+KHVL  +  ++  ++Q  K  +  +E  +  F
Sbjct: 687  NELVKNIINRIKGWHNKLLSTGGRVVLIKHVLLAIPTHLLVALQPTKGTLDNIEIYLARF 746

Query: 457  LSGVTPAEPRRTWRSWDLVAKPYS*NGLSLRRLKDVRNSFSYKLWWKLQQGIGLWALFVK 278
                     +  W +W  +  P+    +++RR+ DV N+FSYK                 
Sbjct: 747  FWSSKEEGGKHHWIAWRTLCLPFEEGWINIRRIGDVCNAFSYKE---------------- 790

Query: 277  SYANGLHDSCA*PCVCRVQAGMKTVLRSRDYSFWGANWTCSGPLLDRCALDSSPDMEHFL 98
                              +  +K +L   + +FW  NW+  GPL     L +   + + +
Sbjct: 791  ----------------IAENEIKRILGRDEVNFWCDNWSQIGPLYK--LLPTGFSVHNIM 832

Query: 97   RFFLMAIGSWPW 62
               ++  G W W
Sbjct: 833  VKEILGNGKWNW 844


>gb|ABN05720.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 391

 Score = 83.2 bits (204), Expect(2) = 1e-20
 Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 5/180 (2%)
 Frame = -3

Query: 817 YKVASGQKINCQKSAFY---VSRYTLPSQVHFIQSHTGVHK*SLPFKYLGCPIAKGRMRI 647
           ++  SG KIN  KS      V+   L      +    G    SLPF YLG PI     R+
Sbjct: 115 FEAVSGLKINFHKSLLVGVNVADSWLTEAASLLNCKVG----SLPFTYLGLPIGGNPRRL 170

Query: 646 RNFHFLVDRIDSKLKGWKNKSLSPGGRHVLVKHVLFTLSIYVFSSIQVLKAVIRAMET*M 467
             +  +V RI S+L  W+++ LS GGR +LVK VL  L +Y  S  +     I ++++ +
Sbjct: 171 SFWEPVVHRIKSRLSSWQSRFLSFGGRLILVKSVLSALPVYALSFFKAPAGTISSIDSIL 230

Query: 466 VEFLSGVTPAEPRRTWRSWDLVAKPYS*NGLSLRRLKDVRNSFSYKLWWKL--QQGIGLW 293
            +F  G +    + +W  W  V K     GL +RRL++   +   K  W+L   +G GLW
Sbjct: 231 SKFFWGGSEDLRKISWVGWQRVCKRKEYGGLGVRRLREFNEALLGKWCWRLLVDRG-GLW 289



 Score = 43.5 bits (101), Expect(2) = 1e-20
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = -1

Query: 987 GRGLKQRDPLSPFLFILVSEALSRELNALLSAGLFVPY 874
           GRGL Q DPLSPFLF+L +E L   + A++ A LF  Y
Sbjct: 38  GRGLLQGDPLSPFLFLLAAEGLHVMMKAMVDASLFRGY 75