BLASTX nr result

ID: Cephaelis21_contig00008539 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00008539
         (1068 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA43841.1| photosystem I psaH protein [Nicotiana sylvestris]     183   6e-44
ref|XP_002304206.1| hypothetical protein POPTRDRAFT_712066 [Popu...   179   1e-42
ref|XP_002516025.1| Photosystem I reaction center subunit VI, ch...   177   3e-42
dbj|BAA04633.1| PSI-H precursor [Nicotiana sylvestris]                177   5e-42
dbj|BAA04634.1| PSI-H precursor [Nicotiana sylvestris]                176   7e-42

>emb|CAA43841.1| photosystem I psaH protein [Nicotiana sylvestris]
          Length = 145

 Score =  183 bits (465), Expect = 6e-44
 Identities = 96/125 (76%), Positives = 102/125 (81%), Gaps = 1/125 (0%)
 Frame = -2

Query: 947 MASLATFAAVQPTA-VRGLAGSSITGTKLHVKPSSLGLKPSKRRAGPVVAKYGEKSVYFD 771
           MASLA FAAVQPT  V+GLAGSSITGTKLH+K S L LKP+K RAGPVVAKYG+KSVYFD
Sbjct: 1   MASLAAFAAVQPTTNVKGLAGSSITGTKLHLKSSRLNLKPTKSRAGPVVAKYGDKSVYFD 60

Query: 770 LDDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXXXLAYVSA 591
           L+DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR              LAY S+
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSS 120

Query: 590 TASPD 576
           TAS D
Sbjct: 121 TASGD 125


>ref|XP_002304206.1| hypothetical protein POPTRDRAFT_712066 [Populus trichocarpa]
           gi|118487059|gb|ABK95360.1| unknown [Populus
           trichocarpa] gi|222841638|gb|EEE79185.1| hypothetical
           protein POPTRDRAFT_712066 [Populus trichocarpa]
          Length = 144

 Score =  179 bits (454), Expect = 1e-42
 Identities = 90/124 (72%), Positives = 98/124 (79%)
 Frame = -2

Query: 947 MASLATFAAVQPTAVRGLAGSSITGTKLHVKPSSLGLKPSKRRAGPVVAKYGEKSVYFDL 768
           MASLATFAAVQP  ++GL GSS++GTKLHVKPS  GL+P   R+G VVAKYG+KSVYFDL
Sbjct: 1   MASLATFAAVQPATIKGLGGSSLSGTKLHVKPSRQGLRPKSLRSGAVVAKYGDKSVYFDL 60

Query: 767 DDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXXXLAYVSAT 588
           +DLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR              LAY SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 587 ASPD 576
           AS D
Sbjct: 121 ASGD 124


>ref|XP_002516025.1| Photosystem I reaction center subunit VI, chloroplast precursor,
           putative [Ricinus communis] gi|223544930|gb|EEF46445.1|
           Photosystem I reaction center subunit VI, chloroplast
           precursor, putative [Ricinus communis]
          Length = 144

 Score =  177 bits (450), Expect = 3e-42
 Identities = 90/124 (72%), Positives = 97/124 (78%)
 Frame = -2

Query: 947 MASLATFAAVQPTAVRGLAGSSITGTKLHVKPSSLGLKPSKRRAGPVVAKYGEKSVYFDL 768
           MASLATFAAVQP  V+GL GSS+TGTKLHVKPS   L+P  RR G V AKYG+KSVYFDL
Sbjct: 1   MASLATFAAVQPATVKGLGGSSLTGTKLHVKPSRQSLRPKNRRNGAVEAKYGDKSVYFDL 60

Query: 767 DDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXXXLAYVSAT 588
           +DLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR              LAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYLSAT 120

Query: 587 ASPD 576
           A+ D
Sbjct: 121 ATGD 124


>dbj|BAA04633.1| PSI-H precursor [Nicotiana sylvestris]
          Length = 145

 Score =  177 bits (448), Expect = 5e-42
 Identities = 93/125 (74%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
 Frame = -2

Query: 947 MASLATFAAVQPTA-VRGLAGSSITGTKLHVKPSSLGLKPSKRRAGPVVAKYGEKSVYFD 771
           MASLAT   VQPT  ++GLAGSSI GTKLHVK S L LKPSK RAG VVAKYG+KSVYFD
Sbjct: 1   MASLATLTVVQPTTTIKGLAGSSIAGTKLHVKSSRLNLKPSKSRAGAVVAKYGDKSVYFD 60

Query: 770 LDDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXXXLAYVSA 591
           L+DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR              LAY S+
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSS 120

Query: 590 TASPD 576
           TAS D
Sbjct: 121 TASGD 125


>dbj|BAA04634.1| PSI-H precursor [Nicotiana sylvestris]
          Length = 145

 Score =  176 bits (447), Expect = 7e-42
 Identities = 95/125 (76%), Positives = 99/125 (79%), Gaps = 1/125 (0%)
 Frame = -2

Query: 947 MASLATFAAVQPT-AVRGLAGSSITGTKLHVKPSSLGLKPSKRRAGPVVAKYGEKSVYFD 771
           MASLAT AAVQPT AV GLAGSSI GTKLHVK S L LK +K RAG VVAKYG+KSVYFD
Sbjct: 1   MASLATLAAVQPTTAVNGLAGSSIIGTKLHVKSSRLNLKSTKSRAGSVVAKYGDKSVYFD 60

Query: 770 LDDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXXXLAYVSA 591
           L+DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR              LAY S+
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSS 120

Query: 590 TASPD 576
           TAS D
Sbjct: 121 TASGD 125


Top