BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00004015
         (3975 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1761   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1738   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1667   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1628   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1626   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1761 bits (4560), Expect = 0.0
 Identities = 869/1212 (71%), Positives = 1007/1212 (83%), Gaps = 10/1212 (0%)
 Frame = -3

Query: 3820 MGASDLKKDESIGCSSKEKIANRSRGMXXXXXXXXXXXXXLNLRSIEELGGAFLKKFCKK 3641
            MGASD K D  +  S  EK++N  +               +    I++L   +LK FCKK
Sbjct: 1    MGASDAKGDLGMSSSMGEKLSNGVQ--------MEIDDDLMGSIEIDDLNKEYLKTFCKK 52

Query: 3640 ASTAFFEQYGLISHQFNSYNDFVKHGIQDVFDSVGEIIVEPGFDPSKRGDVVDWRYASLK 3461
             + +FF +YGLI HQ NS+NDF+K+GIQ VFDS GEI VEPG+DPSKRG+  DWRYAS++
Sbjct: 53   VAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEG-DWRYASVR 111

Query: 3460 FGKVSLGKPNFWASDRYVGEGGTVCLDLLPRHARLQNMTYAATIKVETHIQVYTKKLVDS 3281
            FGKV+L +P  WA +      G   L+ LPRHARLQNMTY++ +K + H QVYT+KLV S
Sbjct: 112  FGKVTLERPRVWAGE----SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRS 167

Query: 3280 DKFKTGM-SQYVDXXXXXXXXXEIPIGKLPVMVGSEVCLMKGTANPDCEFDHGGYFIIKG 3104
            DK+KTG  ++YV+         +I IG++PVMV SE+C M G    DCE+DHGGYF+IKG
Sbjct: 168  DKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKG 227

Query: 3103 AEKTFIAQEQICLRRLWISSTPCWTVAYRPVSKRKRVWLKLI----DSENGGQKVLSVYF 2936
            AEKTFIAQEQICL+RLW+SS P W VAYRP+ KRKRV++KL     ++  GG+KVL+VYF
Sbjct: 228  AEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYF 287

Query: 2935 VVAEMPVWILFFALGASSDREVVNLIDLDIEDSKISNILLASIYNADTECEG----FRKS 2768
               E+P+WILFFALGASSD+EVV+LID +I+D+ ISNIL+ASI+ AD E E     FR+ 
Sbjct: 288  SSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQ 347

Query: 2767 KNALEFVDDLLKKCKFPPAESVEECISSLLFSNLKDFKQKARFLGYMVKCLLEAYIGRRK 2588
             NA+ FVD L+K CKFPP ES++ECIS  LF N    KQKARFLGYMVKCLL+AY GRRK
Sbjct: 348  GNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRK 407

Query: 2587 VDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKVMQRDLDRNRDLQGIDHYFDASIV 2408
             DNRDDFRNK            L+VH++HAERRM+K MQR+L  +RDL+ I++Y DASI+
Sbjct: 408  CDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASII 467

Query: 2407 TNGLSRAFSTGAWSHPYKKMERVSGVVATLRRTNPLQATADMRKTRQQVSYTGRVGDARY 2228
            TNGLSRAFSTG WSHP+K+MER+SGVVATLRRTNPLQ TADMRKTRQQV YTG+VGDARY
Sbjct: 468  TNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARY 527

Query: 2227 PHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTTVLEPLHEMLLECGMKELVNDSSSLL 2048
            PHPSHWGKVCFLSTPDGENCGLVKNLA  GLVST VL+PL + L +CGM++LV+D+S+ L
Sbjct: 528  PHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKL 587

Query: 2047 RGEYKIFVDGNWNGTCEDSDLFVADLRSKRRNKEIQQQVEIKRDEQHGEIRIFSDAGRIL 1868
             G+ K+F+DG+W G CED   FV +LR+KRR+KE+ QQVEIKRDEQ GE+RIFSDAGRIL
Sbjct: 588  SGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRIL 647

Query: 1867 RPLMVVDNLRRIQALKGSDYSFQTLLDNGIVELIGPEEEEDCVTAWGIDYLLMGSKERPP 1688
            RPL+VV+NL++++  KG D++FQ+LLD GIVELIG EEEEDC TAWGI YLL G  + PP
Sbjct: 648  RPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDD-PP 706

Query: 1687 RRYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFFTTNPNIRVDTNVH 1508
             +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGF TTNPNIRVDT  H
Sbjct: 707  VKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSH 766

Query: 1507 QLYYPQRPLFRTMLSDCLGKPTYLR-HKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVM 1331
            QLYYPQRPLFRTM+SDCLGKP Y   HKG++PRPEY+NGQ AIVAVNVHLGYNQEDSLVM
Sbjct: 767  QLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVM 826

Query: 1330 NRASLERGMFRSEHTRTYKSEVDENDMSTKKQKPEDAIKFGKTQSKIGRVDSLDDDGFPF 1151
            NRASLERGMFRSEH R+YKSEVD N+   KK+K ED++ FGK QSKIGRVDSLDDDGFPF
Sbjct: 827  NRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPF 886

Query: 1150 IGASLQTGDIVIGKYAESGTDHSVKLKHTERGMVQKVLLSANDDGKSFAAVSLRQVRSPC 971
            IGA+LQ GDIVIG+ AESG DHS+KLKHTERGMVQKV++SANDDGK+FA VSLRQVR+PC
Sbjct: 887  IGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPC 946

Query: 970  LGDKFSSMHGQKGVLGFLESQENFPFTMQGIVPDIVINPHAFPSRQTPGQLLEAALAKGI 791
            LGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSRQTPGQLLEAAL KGI
Sbjct: 947  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 1006

Query: 790  ALGGVQKYATPFSTLSVDAITDQLHRLGFSRWGSERVYNGRTGEMVSSLVFMGPTCYQRL 611
            A GG+ ++ATPFSTLSVDAI DQLHR GFSRWG ERVYNGRTGEM+ SL+FMGPT YQRL
Sbjct: 1007 ACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRL 1066

Query: 610  NHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 431
             HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS
Sbjct: 1067 IHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1126

Query: 430  DSSQMYICRKCKNMANVIQRSVFGRTKTRGPYCPFCESAEDIVKTHVPYGAKLLCQELFS 251
            DS+ M+ICR+CKN++NVIQRSV G  K RGPYC +CES+E+IVK +VPYGAKLLCQELFS
Sbjct: 1127 DSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFS 1186

Query: 250  MGISLKFDTELC 215
            MGISLKF+T+LC
Sbjct: 1187 MGISLKFETQLC 1198


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1738 bits (4501), Expect = 0.0
 Identities = 862/1212 (71%), Positives = 998/1212 (82%), Gaps = 9/1212 (0%)
 Frame = -3

Query: 3823 LMGASDLKKDESIGCSSKEKIANRSRGMXXXXXXXXXXXXXLNLRSIEELGGAFLKKFCK 3644
            LMGASD K D  +  S  EK++N  +               +    I++L   +LK FCK
Sbjct: 36   LMGASDAKGDLGMSSSMGEKLSNGVQ--------MEIDDDLMGSIEIDDLNKEYLKTFCK 87

Query: 3643 KASTAFFEQYGLISHQFNSYNDFVKHGIQDVFDSVGEIIVEPGFDPSKRGDVVDWRYASL 3464
            K + +FF +YGLI HQ NS+NDF+K+GIQ VFDS GEI VEPG+DPSKRG+  DWRYAS+
Sbjct: 88   KVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEG-DWRYASV 146

Query: 3463 KFGKVSLGKPNFWASDRYVGEGGTVCLDLLPRHARLQNMTYAATIKVETHIQVYTKKLVD 3284
            +FGKV+L +P  WA +      G   L+ LPRHARLQNMTY++ +K + H QVYT+KLV 
Sbjct: 147  RFGKVTLERPRVWAGE----SDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVR 202

Query: 3283 SDKFKTGM-SQYVDXXXXXXXXXEIPIGKLPVMVGSEVCLMKGTANPDCEFDHGGYFIIK 3107
            SDK+KTG  ++YV+         +I IG++PVMV SE+C M G    DCE+DHGGYF+IK
Sbjct: 203  SDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIK 262

Query: 3106 GAEKTFIAQEQICLRRLWISSTPCWTVAYRPVSKRKRVWLKLI----DSENGGQKVLSVY 2939
            GAEKTFIAQEQICL+RLW+SS P W VAYRP+ KRKRV++KL     ++  GG+KVL+VY
Sbjct: 263  GAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVY 322

Query: 2938 FVVAEMPVWILFFALGASSDREVVNLIDLDIEDSKISNILLASIYNADTECEG----FRK 2771
            F   E+P+WILFFALGASSD+EVV+LID +I+D+ ISNIL+ASI+ AD E E     FR+
Sbjct: 323  FSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRR 382

Query: 2770 SKNALEFVDDLLKKCKFPPAESVEECISSLLFSNLKDFKQKARFLGYMVKCLLEAYIGRR 2591
              NA+ FVD L+K CKFPP ES++ECIS  LF N    KQKARFLGYMVKCLL+AY GRR
Sbjct: 383  QGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRR 442

Query: 2590 KVDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKVMQRDLDRNRDLQGIDHYFDASI 2411
            K DNRDDFRNK            L+VH++HAERRM+K MQR+L  +RDL+ I++Y DASI
Sbjct: 443  KCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASI 502

Query: 2410 VTNGLSRAFSTGAWSHPYKKMERVSGVVATLRRTNPLQATADMRKTRQQVSYTGRVGDAR 2231
            +TNGLSRAFSTG WSHP+K+MER+SGVVATLRRTNPLQ TADMRKTRQQV YTG+VGDAR
Sbjct: 503  ITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDAR 562

Query: 2230 YPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTTVLEPLHEMLLECGMKELVNDSSSL 2051
            YPHPSHWGKVCFLSTPDGENCGLVKNLA  GLVST VL+PL + L +CGM++LV+D+S+ 
Sbjct: 563  YPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTK 622

Query: 2050 LRGEYKIFVDGNWNGTCEDSDLFVADLRSKRRNKEIQQQVEIKRDEQHGEIRIFSDAGRI 1871
            L G+ K+F+DG+W G CED   FV +LR+KRR+KE+ QQVEIKRDEQ GE+RIFSDAGRI
Sbjct: 623  LSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRI 682

Query: 1870 LRPLMVVDNLRRIQALKGSDYSFQTLLDNGIVELIGPEEEEDCVTAWGIDYLLMGSKERP 1691
            LRPL+VV+NL++++  KG D++FQ+LLD GIVELIG EEEEDC TAWGI YLL G  + P
Sbjct: 683  LRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDD-P 741

Query: 1690 PRRYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFFTTNPNIRVDTNV 1511
            P +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGF TTNPNIRVDT  
Sbjct: 742  PVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLS 801

Query: 1510 HQLYYPQRPLFRTMLSDCLGKPTYLRHKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVM 1331
            HQLYYPQRPLFRTM+SD             LPRPEY+NGQ AIVAVNVHLGYNQEDSLVM
Sbjct: 802  HQLYYPQRPLFRTMISD-------------LPRPEYFNGQIAIVAVNVHLGYNQEDSLVM 848

Query: 1330 NRASLERGMFRSEHTRTYKSEVDENDMSTKKQKPEDAIKFGKTQSKIGRVDSLDDDGFPF 1151
            NRASLERGMFRSEH R+YKSEVD N+   KK+K ED++ FGK QSKIGRVDSLDDDGFPF
Sbjct: 849  NRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPF 908

Query: 1150 IGASLQTGDIVIGKYAESGTDHSVKLKHTERGMVQKVLLSANDDGKSFAAVSLRQVRSPC 971
            IGA+LQ GDIVIG+ AESG DHS+KLKHTERGMVQKV++SANDDGK+FA VSLRQVR+PC
Sbjct: 909  IGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPC 968

Query: 970  LGDKFSSMHGQKGVLGFLESQENFPFTMQGIVPDIVINPHAFPSRQTPGQLLEAALAKGI 791
            LGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSRQTPGQLLEAAL KGI
Sbjct: 969  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 1028

Query: 790  ALGGVQKYATPFSTLSVDAITDQLHRLGFSRWGSERVYNGRTGEMVSSLVFMGPTCYQRL 611
            A GG+ ++ATPFSTLSVDAI DQLHR GFSRWG ERVYNGRTGEM+ SL+FMGPT YQRL
Sbjct: 1029 ACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRL 1088

Query: 610  NHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 431
             HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS
Sbjct: 1089 IHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1148

Query: 430  DSSQMYICRKCKNMANVIQRSVFGRTKTRGPYCPFCESAEDIVKTHVPYGAKLLCQELFS 251
            DS+ M+ICR+CKN++NVIQRSV G  K RGPYC +CES+E+IVK +VPYGAKLLCQELFS
Sbjct: 1149 DSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFS 1208

Query: 250  MGISLKFDTELC 215
            MGISLKF+T+LC
Sbjct: 1209 MGISLKFETQLC 1220


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1667 bits (4317), Expect = 0.0
 Identities = 823/1124 (73%), Positives = 931/1124 (82%), Gaps = 20/1124 (1%)
 Frame = -3

Query: 3793 ESIGCSS-KEKIANRSRGMXXXXXXXXXXXXXL-------------NLRSIEELGGAFLK 3656
            E +GCSS KEKI+N S  M                           ++  I+ELG +FLK
Sbjct: 2    EEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGESFLK 61

Query: 3655 KFCKKASTAFFEQYGLISHQFNSYNDFVKHGIQDVFDSVGEIIVEPGFDPSKRGDVVDWR 3476
             FCKKAST FFE+YG ISHQ NSYNDF+ +GIQ VFDSVGEI VEPG+DPSKRGD  DW+
Sbjct: 62   NFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDG-DWK 120

Query: 3475 YASLKFGKVSLGKPNFWASDRYVGEGGTVCLDLLPRHARLQNMTYAATIKVETHIQVYTK 3296
            +AS+KFGKV+L +P FWA +++   GG   LDLLPRHARLQNMTY+A I VETH+QVYTK
Sbjct: 121  HASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTK 180

Query: 3295 KLVDSDKFKTGMSQYVDXXXXXXXXXEIPIGKLPVMVGSEVCLMKGTANPDCEFDHGGYF 3116
            KLV SDKFKTG+ ++VD         ++ IG++PVMV SE+C M G    DCEFDHGGYF
Sbjct: 181  KLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYF 240

Query: 3115 IIKGAEKTFIAQEQICLRRLWISSTPCWTVAYRPVSKRKRVWLKL-----IDSENGGQKV 2951
            I KGAEKTFIAQEQ+CL+RLW+S+ P W V YRP  KRKRV++KL     ++   GG+K 
Sbjct: 241  IAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEKA 300

Query: 2950 LSVYFVVAEMPVWILFFALGASSDREVVNLIDLDIEDSKISNILLASIYNADTECEGFRK 2771
            LSVY ++AEMP+W+LFFALG SSDREVVNLID+DIED+ I NIL+ASI+ AD  CE FRK
Sbjct: 301  LSVY-ILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRK 359

Query: 2770 SKNALEFVDDLLKKCKFPPAESVEECISSLLFSNLKDFKQKARFLGYMVKCLLEAYIGRR 2591
             K AL +VD L+K CKFPP ESVEECI++ LF NL  FKQKARFLGYMVKCLL ++IGRR
Sbjct: 360  GKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRR 419

Query: 2590 KVDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKVMQRDLDRNRDLQGIDHYFDASI 2411
            KVDNRDDFRNK            L+ H+KHAERRM+K MQRDL  +R +Q I+HY DASI
Sbjct: 420  KVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASI 479

Query: 2410 VTNGLSRAFSTGAWSHPYKKMERVSGVVATLRRTNPLQATADMRKTRQQVSYTGRVGDAR 2231
            +TNGLSRAFSTG W HPYK+MERVSGVVATLRRTNPLQ TADMRK+RQQV+YTG+VGDAR
Sbjct: 480  ITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDAR 539

Query: 2230 YPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTTVLEPLHEMLLECGMKELVNDSSSL 2051
            YPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVST +L+P  E L  CGM++LV+D S+ 
Sbjct: 540  YPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCSTS 599

Query: 2050 LRGEYKIFVDGNWNGTCEDSDLFVADLRSKRRNKEIQQQVEIKRDEQHGEIRIFSDAGRI 1871
            L G+ K+ +DG W G CEDS LFV+ LR KRR  E+  QVE+KRDE  GE+RIFSD GRI
Sbjct: 600  LHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRI 659

Query: 1870 LRPLMVVDNLRRIQALKGSDYSFQTLLDNGIVELIGPEEEEDCVTAWGIDYLLMGSKERP 1691
            LRPL+VV NL++I+ALKG DY FQ+LLDNGI+ELIGPEEEEDC TAWG++Y+L   KE P
Sbjct: 660  LRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENP 719

Query: 1690 PRRYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFFTTNPNIRVDTNV 1511
            P +YTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGF T NPN RVDTN 
Sbjct: 720  PAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNT 779

Query: 1510 HQLYYPQRPLFRTMLSDCLGKPTYLRH-KGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLV 1334
            HQLYYPQRPLFRTML+D LGKP   ++ KGMLPRPEY+NGQCAIVAVNVHLGYNQEDSLV
Sbjct: 780  HQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLV 839

Query: 1333 MNRASLERGMFRSEHTRTYKSEVDENDMSTKKQKPEDAIKFGKTQSKIGRVDSLDDDGFP 1154
            MNRASLERGMFRSEH R+YK+EVD  +   KK K ED++ FGKTQSKIGRVDSLDDDGFP
Sbjct: 840  MNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFP 899

Query: 1153 FIGASLQTGDIVIGKYAESGTDHSVKLKHTERGMVQKVLLSANDDGKSFAAVSLRQVRSP 974
            FIGA+LQ+GDI+IGK++ESG DHSVKLKHTERGMVQKVLLSAND+GK+FA VSLRQVRSP
Sbjct: 900  FIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSP 959

Query: 973  CLGDKFSSMHGQKGVLGFLESQENFPFTMQGIVPDIVINPHAFPSRQTPGQLLEAALAKG 794
            CLGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSRQTPGQLLEAAL KG
Sbjct: 960  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 1019

Query: 793  IALGGVQKYATPFSTLSVDAITDQLHRLGFSRWGSERVYNGRTGEMVSSLVFMGPTCYQR 614
            IALGG QKYATPFSTLSVDAI +QL   GF+RWG+ERVYNGRTGEMV SL+FMGPT YQR
Sbjct: 1020 IALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQR 1079

Query: 613  LNHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 482
            L HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1080 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1628 bits (4215), Expect = 0.0
 Identities = 799/1168 (68%), Positives = 944/1168 (80%), Gaps = 10/1168 (0%)
 Frame = -3

Query: 3688 SIEELGGAFLKKFCKKASTAFFEQYGLISHQFNSYNDFVKHGIQDVFDSVGEIIVEPGFD 3509
            +I +LG AFLK FCKK+S AFF QYGLISHQ NSYNDF+K+GIQ  FD  G+I+V+PG+D
Sbjct: 39   NIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYD 98

Query: 3508 PSKRGDVVDWRYASLKFGKVSLGKPNFWASDRYVGEGGTVCLDLLPRHARLQNMTYAATI 3329
            PSK+GD  +WRYA++KFGKV+L KP FW      G       ++LPRHARLQNMTY++ +
Sbjct: 99   PSKKGDG-EWRYATVKFGKVTLDKPKFWG-----GAASGKEYNMLPRHARLQNMTYSSRM 152

Query: 3328 KVETHIQVYTKKLVDSDKFKTGMSQYVDXXXXXXXXXE--IPIGKLPVMVGSEVCLMKGT 3155
            K+   +++YT+KLV SDKFKTG  QYVD            + IG+LPVMV S++C MK  
Sbjct: 153  KINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDG 212

Query: 3154 ANPDCEFDHGGYFIIKGAEKTFIAQEQICLRRLWISSTPCWTVAYRPVSKRKRVWLKLID 2975
               DCEFD GGYF+IKGAEK FIAQEQICLRRLWIS+   WTVAYR   KR R+ ++L++
Sbjct: 213  QKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVE 272

Query: 2974 SENGG-----QKVLSVYFVVAEMPVWILFFALGASSDREVVNLIDLDIEDSKISNILLAS 2810
            +         +KVL+VYF+  E+PVWILFFALG SSD+E+V+LID   +D  + NIL AS
Sbjct: 273  NSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFAS 332

Query: 2809 IYNADTE--CEGFRKSKNALEFVDDLLKKCKFPPAESVEECISSLLFSNLKDFKQKARFL 2636
            +   D +   + FR+ K AL F+D+ ++K  FPPA+ +E+C++  LF++LK  KQK  FL
Sbjct: 333  VREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFL 392

Query: 2635 GYMVKCLLEAYIGRRKVDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMIKVMQRDLDR 2456
            GYMVKCLL+AY GRRK DNRDDFRNK            LKVH+ HA RRM K +QRDL  
Sbjct: 393  GYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYG 452

Query: 2455 NRDLQGIDHYFDASIVTNGLSRAFSTGAWSHPYKKMERVSGVVATLRRTNPLQATADMRK 2276
            +R +  I+HY DASI+TNGLSRAFSTGAW+H +K+MER+SGVVATL R NPLQ  A++R+
Sbjct: 453  DRQVHPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRR 512

Query: 2275 TRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTTVLEPLHEML 2096
            TRQQV+YTG+VGDARYPHPSHWG+VCFLSTPDGENCGL+KNL+  GLVS    + +   L
Sbjct: 513  TRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTL 572

Query: 2095 LECGMKELVNDSSSLLRGEYKIFVDGNWNGTCEDSDLFVADLRSKRRNKEIQQQVEIKRD 1916
              CGM+ LV+++S+   G+Y+IF+DG W G CEDS  FV ++R KRR      QVE+KRD
Sbjct: 573  FRCGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRD 632

Query: 1915 EQHGEIRIFSDAGRILRPLMVVDNLRRIQALKGSDYSFQTLLDNGIVELIGPEEEEDCVT 1736
            EQ  E+RIFSDAGRILRPL+VV+NL RI   KG +Y+FQ+LLD GI+ELIG EEEEDC  
Sbjct: 633  EQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRV 692

Query: 1735 AWGIDYLLMGSKERPPRRYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAI 1556
            AW I +L+   ++    +Y+HCELDMSFLLGLSCG++PFANHDHARR L+QS+KHS QAI
Sbjct: 693  AWSIKHLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAI 749

Query: 1555 GFFTTNPNIRVDTNVHQLYYPQRPLFRTMLSDCLGKPTYLR-HKGMLPRPEYYNGQCAIV 1379
            GF  TN N RVDT  HQL+YPQRPLFRTM +DCLG P YL  H G+LP+PE+YNGQ AIV
Sbjct: 750  GFSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIV 809

Query: 1378 AVNVHLGYNQEDSLVMNRASLERGMFRSEHTRTYKSEVDENDMSTKKQKPEDAIKFGKTQ 1199
            AVNVHLGYNQEDSLVMNRASLERGMFRSEH R+YK+EVD  + S K++K +DAI FGKTQ
Sbjct: 810  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQ 869

Query: 1198 SKIGRVDSLDDDGFPFIGASLQTGDIVIGKYAESGTDHSVKLKHTERGMVQKVLLSANDD 1019
            SKIGRVDSLDDDGFP+IGA+LQ+GDIVIG+ AESG DHS+KLKHTE+GMVQKV+LS+NDD
Sbjct: 870  SKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDD 929

Query: 1018 GKSFAAVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTMQGIVPDIVINPHAFPS 839
            GK++A VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPS
Sbjct: 930  GKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 989

Query: 838  RQTPGQLLEAALAKGIALGGVQKYATPFSTLSVDAITDQLHRLGFSRWGSERVYNGRTGE 659
            RQTPGQLLEAAL KGIA GG  KYATPFST SVDAITDQLHR GFSRWGSERVYNGRTGE
Sbjct: 990  RQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGE 1049

Query: 658  MVSSLVFMGPTCYQRLNHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 479
            M+ SL+FMGPT YQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 1050 MMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1109

Query: 478  AHGAAANLHERLFTLSDSSQMYICRKCKNMANVIQRSVFGRTKTRGPYCPFCESAEDIVK 299
            AHGA+ANLHERLFTLSDSSQM++C+KCKN+A+VIQRSV G  K RGPYC  CES +DIV+
Sbjct: 1110 AHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVR 1169

Query: 298  THVPYGAKLLCQELFSMGISLKFDTELC 215
             +VPYGAKLLCQELFSMGI+LKF+T+LC
Sbjct: 1170 VNVPYGAKLLCQELFSMGINLKFETQLC 1197


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1626 bits (4211), Expect = 0.0
 Identities = 813/1206 (67%), Positives = 956/1206 (79%), Gaps = 9/1206 (0%)
 Frame = -3

Query: 3805 LKKDESIGCSSK-EKIANRSRGMXXXXXXXXXXXXXL--NLRSIEELGGAFLKKFCKKAS 3635
            +++D  IG SSK EK+   S  M                +  S+ ++G A LK FC KA+
Sbjct: 8    MEQDNDIGTSSKTEKLFKASTDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAA 67

Query: 3634 TAFFEQYGLISHQFNSYNDFVKHGIQDVFDSVGEIIVEPGFDPSKRGDVVDWRYASLKFG 3455
            T FF +YGLISHQ NSYNDF+ +GIQ  FDS GE++VEPG+DPSK+G+  +WRYAS+KFG
Sbjct: 68   TLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGEN-EWRYASVKFG 126

Query: 3454 KVSLGKPNFWASDRYVGEGGTVCLDLLPRHARLQNMTYAATIKVETHIQVYTKKLVDSDK 3275
            KV+L KP FW+        G     +LPRHARLQNMTY++ +KV   ++VYT+K+V SDK
Sbjct: 127  KVALEKPTFWS--------GADEHKMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDK 178

Query: 3274 FKTGMSQYVDXXXXXXXXXEIPIGKLPVMVGSEVCLMKGTANPDCEFDHGGYFIIKGAEK 3095
            FKTG  QYVD          I IG LPVMV S++C MK     DC+FDHGGYF+IKGAEK
Sbjct: 179  FKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEK 238

Query: 3094 TFIAQEQICLRRLWISSTPCWTVAYRPVSKRKRVWLKLI-----DSENGGQKVLSVYFVV 2930
             FIAQEQICL+RLWIS+   WTV+Y+   KR R+ ++L+     +     +K L+VYF+ 
Sbjct: 239  VFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLS 298

Query: 2929 AEMPVWILFFALGASSDREVVNLIDLDIEDSKISNILLASIYNADTECEGFRKSKNALEF 2750
             E+P+WILFFALG +SD+EV++LI     D++I NI  ASI++AD + EGFR+ K ALE+
Sbjct: 299  TEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEY 358

Query: 2749 VDDLLKKCKFPPAESVEECISSLLFSNLKDFKQKARFLGYMVKCLLEAYIGRRKVDNRDD 2570
            V   ++  +FPP E+ E+     LF  L   +QKARFLGYMVKCLL+AY G+RK +N D 
Sbjct: 359  VVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDS 417

Query: 2569 FRNKXXXXXXXXXXXXLKVHLKHAERRMIKVMQRDLDRNRDLQGIDHYFDASIVTNGLSR 2390
            FRNK            LKVH+ HA RRM K +Q+DL  +RD++ I+HY DASIVTNGLSR
Sbjct: 418  FRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSR 477

Query: 2389 AFSTGAWSHPYKKMERVSGVVATLRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHW 2210
            AFSTGAWSHPYK+MER+SGVVA L R NPLQ   D+RKTR  V YTG+VGDAR+PHPSHW
Sbjct: 478  AFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHW 537

Query: 2209 GKVCFLSTPDGENCGLVKNLASLGLVSTTVLEPLHEMLLECGMKELVNDSSSLLRGEYKI 2030
            G+VCFLSTPDGENCGLVKNLA+ GLVS  +LEPL + L+  GM+++  DS S L  + K+
Sbjct: 538  GRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPEDSHSDLDEKDKV 597

Query: 2029 FVDGNWNGTCEDSDLFVADLRSKRRNKEIQQQVEIKRDEQHGEIRIFSDAGRILRPLMVV 1850
            F++G W G CEDS LFVA+LR  RR K++ QQVEIKRDEQ  E+RIFSDAGRILRPL+VV
Sbjct: 598  FLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVV 657

Query: 1849 DNLRRIQALKGSDYSFQTLLDNGIVELIGPEEEEDCVTAWGIDYLLMGSKERPPRRYTHC 1670
             NL +I+A KG + +FQ+LLD GI+E +G EEEEDC TAWGI +LL G   +   +YTHC
Sbjct: 658  QNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHC 717

Query: 1669 ELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFFTTNPNIRVDTNVHQLYYPQ 1490
            ELDMSFLLGLSCGIIPFANHDHARRVLYQ++KHSQQAIGF TTNPNIRVDT  HQLYYPQ
Sbjct: 718  ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQ 777

Query: 1489 RPLFRTMLSDCLGKPTYLR-HKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLE 1313
            RPLFRT+ SDCLGKP   R H G++P+PE YNGQ AIVAVNVHLGYNQEDSLVMNRASLE
Sbjct: 778  RPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 837

Query: 1312 RGMFRSEHTRTYKSEVDENDMSTKKQKPEDAIKFGKTQSKIGRVDSLDDDGFPFIGASLQ 1133
            RGMFRSEH R+YK++VD  ++  K++K +D + FGK  SKIGRVDSLDDDGFPFIGA+LQ
Sbjct: 838  RGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQ 897

Query: 1132 TGDIVIGKYAESGTDHSVKLKHTERGMVQKVLLSANDDGKSFAAVSLRQVRSPCLGDKFS 953
            +GDIVIG+ AESG DHS+KLKHTERGMVQKV+LS+ND+GK+FA VSLRQVRSPCLGDKFS
Sbjct: 898  SGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFS 957

Query: 952  SMHGQKGVLGFLESQENFPFTMQGIVPDIVINPHAFPSRQTPGQLLEAALAKGIALGGVQ 773
            SMHGQKGVLGFLESQENFPFT QGIVPDIVINPH+FPSRQTPGQLLEAAL KGIA GG  
Sbjct: 958  SMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSM 1017

Query: 772  KYATPFSTLSVDAITDQLHRLGFSRWGSERVYNGRTGEMVSSLVFMGPTCYQRLNHMAED 593
            KYATPFSTLSV+AIT+QLHR GFSRWG+ERVYNGRTGEMV SL+FMGPT YQRL HMAED
Sbjct: 1018 KYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAED 1077

Query: 592  KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMY 413
            KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQM+
Sbjct: 1078 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMH 1137

Query: 412  ICRKCKNMANVIQRSVFGRTKTRGPYCPFCESAEDIVKTHVPYGAKLLCQELFSMGISLK 233
            IC+KCKN+ANVIQR+V G  K RGPYC  CES ++IVK +VPYGAKLLCQELFSMGISLK
Sbjct: 1138 ICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLK 1197

Query: 232  FDTELC 215
            F+T LC
Sbjct: 1198 FETRLC 1203