BLASTX nr result
ID: Cephaelis21_contig00000878
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00000878
(5951 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2763 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2729 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2729 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2726 0.0
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 2718 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2763 bits (7163), Expect = 0.0
Identities = 1375/1538 (89%), Positives = 1440/1538 (93%), Gaps = 2/1538 (0%)
Frame = +1
Query: 202 MDIRFPYSPAEVTKVRVVQFGILSSDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 381
MD+RFPYSPAEV KVR+VQFGILS DEIRQMSVV IEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 382 DRKLKCETCMATMAECSGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKLLAAEDDPK 561
DRK+KCETC A MAEC GHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSK+LA E+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 562 FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVQGQDSDEPVKKTRSGCGAQQPKITI 741
FKQA +IRNPKNRLKKILDACKNKSKCEGGDEI+ Q DSDEPVKK+R GCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 742 DGMKMVAEYKAQKKKNDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCELLGFNPKYAR 921
+GMKM+AEYK Q+KKNDD EQLPEPVERKQQLSAE+VL+VLKRISDEDC LLG NPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 922 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1101
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1102 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1281
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1282 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1461
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1462 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1641
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1642 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1821
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1822 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2001
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2002 LQRNSAWHQDDEKGLITPGDTQVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 2181
L R SAWH + E G ITPGDTQVRIEKGELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2182 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINESISEAKNRVKGLIRQAQEKKL 2361
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINE+IS+AKN VK LIR AQE++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2362 EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2541
E EPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2542 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2721
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2722 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIXXXX 2901
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWI
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2902 XXXXXXXXXXXXXMFRYELDEDNWNPDYITPEAVEDLKTIREIRSVFDAEVQKLEADRLQ 3081
+F+YE+D++NWNP Y+ PE VEDLKTIRE R+VFDAEVQKLEADR Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 3082 LATEIATTGDNTWHLPVNIKRLIHNAQKTFKIDHRRPSDMHPMEIVEAVDKLQERLKVVH 3261
L TEIATTGDN+W +PVN+KRLI NAQKTFK+D RRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 3262 GDDYLSMEAQKNATLFFNILLRSALASKRVLSEYRLTRGAFEWVVGEIESRFLQSLVAPG 3441
GDD +SMEAQKNATLFFNILLRS ASKRVL EYRLTR AFEWV+GEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3442 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3621
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 3622 -DSSTSKDRAKSIQCALEYTTLRSVTQATEVWYDPDPMSTIIPEDVDFVKSYYEMPDEEI 3798
D S +K+RAK++QCALEYTTLRSVTQATEVWYDPDPMSTII EDVDFVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 3799 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 3978
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3979 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQIKVNQFDENQGFVT 4158
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK KVN+FDE++GF
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 4159 ENEWMLDTEGVNLLAVMCHEEVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4338
E EWMLDTEGVNLLAVMCHE+VDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4339 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAETDC 4518
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 4519 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEINLPSYLEGGNLDFGMTPGRSPISG 4698
LRGVTENIMLGQLAPIGTGDCALYLN++ML+ AIE+ LPSY+EG LDFGMTP RSPI+G
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEG--LDFGMTPSRSPITG 1498
Query: 4699 TPYHD-MMSPSVIMSPNYRLSPATGLEQFSPVINGMHF 4809
TPYHD MMSP+ ++SPN RLSP T QFSP + GM F
Sbjct: 1499 TPYHDGMMSPNYLLSPNLRLSPITD-AQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2729 bits (7074), Expect = 0.0
Identities = 1358/1538 (88%), Positives = 1434/1538 (93%), Gaps = 2/1538 (0%)
Frame = +1
Query: 202 MDIRFPYSPAEVTKVRVVQFGILSSDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 381
MD+RFPYSPAEV KVR+VQFGILS DEIRQMSVV IEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 382 DRKLKCETCMATMAECSGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKLLAAEDDPK 561
DRK+KCETC A MAEC GHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSK+L E+DPK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 562 FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVQGQDSDEPVKKTRSGCGAQQPKITI 741
FKQA+RI+NPKNRL+KILDACKNK+KCEGGDEIDVQGQDSD+PVKK+R GCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 742 DGMKMVAEYKAQKKKNDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCELLGFNPKYAR 921
+GMKM AEYKAQ+KKNDD EQLPEPVERKQ L+AE+VL +LKRI+DEDC+LLG NPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 922 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1101
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1102 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1281
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1282 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1461
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1462 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1641
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1642 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1821
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1822 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2001
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2002 LQRNSAWHQDDEKGLITPGDTQVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 2181
L R SAWH + E G ITPGDT VRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2182 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINESISEAKNRVKGLIRQAQEKKL 2361
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINE+IS AKN VK LI++AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2362 EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2541
EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2542 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2721
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2722 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIXXXX 2901
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWI
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2902 XXXXXXXXXXXXXMFRYELDEDNWNPDYITPEAVEDLKTIREIRSVFDAEVQKLEADRLQ 3081
+FRYE +++NW P+Y+ PE VEDLKTIRE R+VF+AEVQKLEADR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3082 LATEIATTGDNTWHLPVNIKRLIHNAQKTFKIDHRRPSDMHPMEIVEAVDKLQERLKVVH 3261
L TEIATTG+N+W +PVN+KRLI NAQKTFKID RR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3262 GDDYLSMEAQKNATLFFNILLRSALASKRVLSEYRLTRGAFEWVVGEIESRFLQSLVAPG 3441
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTR AFEWV+GEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3442 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3621
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3622 -DSSTSKDRAKSIQCALEYTTLRSVTQATEVWYDPDPMSTIIPEDVDFVKSYYEMPDEEI 3798
+++ +K+RAK++QCALEYTTLRSVTQATEVWYDPDPMSTII ED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3799 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 3978
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3979 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQIKVNQFDENQGFVT 4158
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK KVN+FDEN+GF
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4159 ENEWMLDTEGVNLLAVMCHEEVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4338
E EWMLDTEGVNLLAVM HE+VDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4339 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAETDC 4518
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4519 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEINLPSYLEGGNLDFGMTPGRSPISG 4698
LRGVTENIMLGQLAPIGTG CALYLN+EMLK AIE+ LPSY++G LDFGMTP RSPISG
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDG--LDFGMTPSRSPISG 1498
Query: 4699 TPYHD-MMSPSVIMSPNYRLSPATGLEQFSPVINGMHF 4809
TPYH+ MMSP+ ++SPN RLSP + QFSP + GM F
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPISD-AQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2729 bits (7074), Expect = 0.0
Identities = 1358/1538 (88%), Positives = 1434/1538 (93%), Gaps = 2/1538 (0%)
Frame = +1
Query: 202 MDIRFPYSPAEVTKVRVVQFGILSSDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 381
MD+RFPYSPAEV KVR+VQFGILS DEIRQMSVV IEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 382 DRKLKCETCMATMAECSGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKLLAAEDDPK 561
DRK+KCETC A MAEC GHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSK+L E+DPK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 562 FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVQGQDSDEPVKKTRSGCGAQQPKITI 741
FKQA+RI+NPKNRL+KILDACKNK+KCEGGDEIDVQGQDSD+PVKK+R GCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 742 DGMKMVAEYKAQKKKNDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCELLGFNPKYAR 921
+GMKM AEYKAQ+KKNDD EQLPEPVERKQ L+AE+VL +LKRI+DEDC+LLG NPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 922 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1101
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1102 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1281
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1282 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1461
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1462 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1641
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1642 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1821
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1822 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2001
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2002 LQRNSAWHQDDEKGLITPGDTQVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 2181
L R SAWH + E G ITPGDT VRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2182 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINESISEAKNRVKGLIRQAQEKKL 2361
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINE+IS AKN VK LI++AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2362 EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2541
EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2542 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2721
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2722 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIXXXX 2901
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWI
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2902 XXXXXXXXXXXXXMFRYELDEDNWNPDYITPEAVEDLKTIREIRSVFDAEVQKLEADRLQ 3081
+FRYE +++NW P+Y+ PE VEDLKTIRE R+VF+AEVQKLEADR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3082 LATEIATTGDNTWHLPVNIKRLIHNAQKTFKIDHRRPSDMHPMEIVEAVDKLQERLKVVH 3261
L TEIATTG+N+W +PVN+KRLI NAQKTFKID RR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3262 GDDYLSMEAQKNATLFFNILLRSALASKRVLSEYRLTRGAFEWVVGEIESRFLQSLVAPG 3441
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTR AFEWV+GEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3442 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3621
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3622 -DSSTSKDRAKSIQCALEYTTLRSVTQATEVWYDPDPMSTIIPEDVDFVKSYYEMPDEEI 3798
+++ +K+RAK++QCALEYTTLRSVTQATEVWYDPDPMSTII ED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3799 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 3978
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3979 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQIKVNQFDENQGFVT 4158
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK KVN+FDEN+GF
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4159 ENEWMLDTEGVNLLAVMCHEEVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4338
E EWMLDTEGVNLLAVM HE+VDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4339 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAETDC 4518
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4519 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEINLPSYLEGGNLDFGMTPGRSPISG 4698
LRGVTENIMLGQLAPIGTG CALYLN+EMLK AIE+ LPSY++G LDFGMTP RSPISG
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDG--LDFGMTPSRSPISG 1498
Query: 4699 TPYHD-MMSPSVIMSPNYRLSPATGLEQFSPVINGMHF 4809
TPYH+ MMSP+ ++SPN RLSP + QFSP + GM F
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPISD-AQFSPYVGGMAF 1535
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2726 bits (7065), Expect = 0.0
Identities = 1352/1538 (87%), Positives = 1436/1538 (93%), Gaps = 2/1538 (0%)
Frame = +1
Query: 202 MDIRFPYSPAEVTKVRVVQFGILSSDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 381
MD+RFPYSPAEV KVR+VQFGILS DEIRQMSVV IE SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 382 DRKLKCETCMATMAECSGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKLLAAEDDPK 561
DRK+KCETC A MAEC GHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSK+LA E+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 562 FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVQGQDSDEPVKKTRSGCGAQQPKITI 741
FKQA++I+NPKNRLKKILDACKNK+KCEGGD+IDV QD+DEPVKK+R GCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 742 DGMKMVAEYKAQKKKNDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCELLGFNPKYAR 921
+GMKM+AEYKAQ+KKNDDQEQLPEPVERKQ L+AE+VL VLKRISD+DC LLGFNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 922 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1101
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLK+QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 1102 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1281
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1282 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1461
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1462 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1641
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1642 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1821
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1822 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2001
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2002 LQRNSAWHQDDEKGLITPGDTQVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 2181
L R +AWH D E+G+ITPGDT VRIEKGELLSGT+CKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2182 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINESISEAKNRVKGLIRQAQEKKL 2361
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINE+IS AKN VK LIR+AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2362 EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2541
EP+PGRTMMESFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2542 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2721
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2722 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIXXXX 2901
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWI
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2902 XXXXXXXXXXXXXMFRYELDEDNWNPDYITPEAVEDLKTIREIRSVFDAEVQKLEADRLQ 3081
+F+YELD++NWNP Y+ + ++DLK IRE+R VFDAEVQKLEADR Q
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 3082 LATEIATTGDNTWHLPVNIKRLIHNAQKTFKIDHRRPSDMHPMEIVEAVDKLQERLKVVH 3261
L TEIATTGD++W LPVN++RLI NAQKTFK+D RRPSD+HPME VEAVDKLQERLKVV
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 3262 GDDYLSMEAQKNATLFFNILLRSALASKRVLSEYRLTRGAFEWVVGEIESRFLQSLVAPG 3441
GDD LS+EAQKNATLFF ILLRS LASKRVL +YRLTR AF+WV+GEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 3442 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL- 3618
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 3619 KDSSTSKDRAKSIQCALEYTTLRSVTQATEVWYDPDPMSTIIPEDVDFVKSYYEMPDEEI 3798
+ + +K+RAK++QCALEYTTLRSVTQATEVWYDPDPMSTII EDVDFVKSYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 3799 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 3978
P+KISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3979 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQIKVNQFDENQGFVT 4158
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQ KV++FDEN+GF T
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 4159 ENEWMLDTEGVNLLAVMCHEEVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4338
EWMLDTEGVNLLAVMC+E VDARRTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4339 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAETDC 4518
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 4519 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEINLPSYLEGGNLDFGMTPGRSPISG 4698
LRGVTENIMLGQLAPIGTGDCALYLN++MLK AIE+ LPSY++G LDFGMTP RSP+S
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDG--LDFGMTPARSPVSV 1498
Query: 4699 TPYHD-MMSPSVIMSPNYRLSPATGLEQFSPVINGMHF 4809
TPYHD MMSPS ++SP+ RLSP T QFSP ++GM F
Sbjct: 1499 TPYHDGMMSPSYLLSPSLRLSPTTD-AQFSPYVSGMPF 1535
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 2718 bits (7046), Expect = 0.0
Identities = 1356/1538 (88%), Positives = 1426/1538 (92%), Gaps = 2/1538 (0%)
Frame = +1
Query: 202 MDIRFPYSPAEVTKVRVVQFGILSSDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI 381
MDIRFP+SPAEV KVR+VQFGILS DEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 382 DRKLKCETCMATMAECSGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKLLAAEDDPK 561
DRKLKCETC A+MAEC GHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSK+LA E+D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 562 FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVQGQDSDEPVKKTRSGCGAQQPKITI 741
FKQA+RIRNPKNRLKKILDACKNKSKCEGGDEID+ GQD+DEPVKK+R GCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 742 DGMKMVAEYKAQKKKNDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCELLGFNPKYAR 921
+GMKM+AEYKAQ+KK+DDQEQLPEPVERKQ LSAE+VL VLKRISDEDC+LLG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 922 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 1101
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 1102 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1281
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1282 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1461
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1462 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1641
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1642 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1821
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1822 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2001
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 2002 LQRNSAWHQDDEKGLITPGDTQVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 2181
L R S+WH + E+G ITPGDT VRIEKGELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2182 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINESISEAKNRVKGLIRQAQEKKL 2361
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN++IS AK +VK LIR+AQEKKL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2362 EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2541
E EPGRTMM+SFEN+VNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2542 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2721
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2722 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIXXXX 2901
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWI
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2902 XXXXXXXXXXXXXMFRYELDEDNWNPDYITPEAVEDLKTIREIRSVFDAEVQKLEADRLQ 3081
+FRYE D++NW P Y+ E VEDLKTIRE R+VF+AEVQKLEADR Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3082 LATEIATTGDNTWHLPVNIKRLIHNAQKTFKIDHRRPSDMHPMEIVEAVDKLQERLKVVH 3261
LATEIATTGD++ LPVN+KRLI NAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3262 GDDYLSMEAQKNATLFFNILLRSALASKRVLSEYRLTRGAFEWVVGEIESRFLQSLVAPG 3441
G+D LS EAQKNATL FNILLRS ASKRVL EYRL+R AFEWVVGEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 3442 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3621
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 3622 -DSSTSKDRAKSIQCALEYTTLRSVTQATEVWYDPDPMSTIIPEDVDFVKSYYEMPDEEI 3798
D +K+RAKS+QCALEYTTLRSVTQATEVWYDPDPMSTII ED DFVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 3799 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 3978
+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3979 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQIKVNQFDENQGFVT 4158
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK KV +FDENQGF
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 4159 ENEWMLDTEGVNLLAVMCHEEVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG 4338
EWMLDTEGVNLLAVMCHE+VDA RTTSNHLIEVIEVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4339 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAETDC 4518
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 4519 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEINLPSYLEGGNLDFGMTPGRSPISG 4698
LRGVTENIMLGQLAPIGTG+CALYLN+EMLK AIE+ LPSY++G LDFGMTP RSPISG
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDG--LDFGMTPARSPISG 1498
Query: 4699 TPYHD-MMSPSVIMSPNYRLSPATGLEQFSPVINGMHF 4809
TPYH+ +MSPS ++SPN RLSP T QFSP + GM F
Sbjct: 1499 TPYHEGLMSPSYLLSPNLRLSP-TSDAQFSPYVGGMAF 1535