BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00000809
         (4660 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1778   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1777   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1773   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1769   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1764   0.0  

>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1778 bits (4606), Expect = 0.0
 Identities = 862/1198 (71%), Positives = 1011/1198 (84%), Gaps = 1/1198 (0%)
 Frame = -1

Query: 4027 MGSEGSLRNLVVTQISVGGFENHVTAKMLADYFEDNIGTVCRCRLKTSSTPLESYPAYDI 3848
            MGSEGS ++LVVTQISVGGF+N V AKML++Y E+ +G V RCRLK SSTP +SYP +D+
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 3847 DCELAPKKSDYERVKPHAFLHFASSDAVQRALDAAGRGELILGMKTLKVSLGPKNPHRLN 3668
            D E   +  DYE+V PHAF+HFASS++ + AL AAG  ELILG K L VSLGP+NP+RLN
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3667 ERRRTKIPFRLSDVKVEIGVLVGRDEFVVGWRGPPTGFEFLVDPFNSNCSLLFTRDTAFS 3488
            +RRRT +PF+ SDV +E+GVLV +D+FVVGWRGP TG +FLVDPFN  C +LFT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 3487 FKGESKYAVIKCDFKVEFLVREILSVKQYRDSSGFIILLQLFSSPSIYYRTADDDIEVSV 3308
            F+GE+++A+IKC+FK+EFLVREI  +K+ +D +  +ILLQL SSP ++YRTADDDIE SV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3307 XXXXXXXXXXWIRTIDFTPSGAIGRCNTYRISIPPRKGAILGRALNYLRDCRVHIADVCM 3128
                      WIRT D T SGAIGRCNTYRISI PR G    +A+ Y    RV + ++C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3127 EQRLQMKDEPDFGMPLSDPFFCIQYKEGVTFKVMFLVNAVMHKGILNQHQMSDQFFELLG 2948
             + L+++DEPDFG+ +SDPFFC Q  EG++FKVMFLVNAV+HKGI+NQHQM+++FF LL 
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2947 RQKEEVNLVALKHIYSYKWPPYDACKKLESVQQWLLKNPKLIERPRQLDDIVEVRRLIIT 2768
              +EEVNL ALKH++SYKWP  DA +KL  +++WLLKNPKL+ER  +LDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2767 PAKAYCLPPEAELSNRVLRHYRDVADRFLRVTFMDEGMQMLNKNVLNFYAAPIVWEVTSN 2588
            P KAYCLPP  ELSNRVLR+Y+ VADRFLRVTFMDEGM+ LN+NVL +YAA IV E+TSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2587 SNPQKTAMFRKVKAILSSGFYLCGRKYSFLAFSANQLRDRSAWFFAEEKNVQVANIVNWM 2408
            SNPQ+TA+F++VK+ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAE+  ++V  I++WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2407 GKFSDRNIAKCAARMGQCFSSTYATVDVPSTEVDSKLQDIKRNGHVFSDGIGMISSDLAT 2228
            G+FS+RN+AKCAARMGQCFSSTYATV+VPS+EV+S+L DI+RNG+VFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 2227 EVAERLNLSENPPCAYQIRYAGYKGVVACWPSKKDGKRLYLRKSMQKFESKHTVLEICSW 2048
            EVAE+L+LS NPP AYQIRYAG KGVVACWP+K DG RL LR SM+KF+S HT+LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2047 TRFQPGFLNRQIVTLLSALDVRDNIFWEMQTLMICKLNVMLEDTDVAFDVLTASCAEQGN 1868
            TRFQPGFLNRQIVTLLS+LDV+D IFWEMQ  MI  L+ ML D+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1867 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLRDLRERARIFVPCGRWLMGCLDEFAVLEQG 1688
            TAAIMLSAGFKPQ+EPHLRGML+SIRA+QL DLR +ARIFVP GRWLMGCLDE   LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1687 QCFIQVSTPSLENCFLKHGSKFSKAKKNLQVIKGLVAIAKNPCLHPGDVRILEAVDFPEL 1508
            QCFIQVS+PSLENCF+KHG KFS  KKNLQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1507 HHLDDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWIPMDYSPGEIRKL 1328
            HHL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E++++
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 1327 PRDVKHQDIIDFFTKNMVTEGLGTICNAHVVHADLSEYGALDEKCIKLAELAATAVDFPK 1148
             R V H DIIDFF+KNMV E LG ICNAHVVHADLSE+GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1147 TGKVVTMPTDYKPKMYPDFMGKEEFQTYMSKKILGKLYRHVID-CDQDEATPSEITFVAD 971
            TGK+VTMP D KPKMYPDFMGKEEFQ+Y SKKILGKLYR V D CD +    + +  V +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 970  NIPYDRDLEVPGSEVFISEAWNSKCSYDGQLNSLLGQYKVNREEEVVSGHIWSMPKYSSK 791
            +IPYD  LE+PGS  FI +AWNSKCSYDGQL+ LLGQYKVNREEEVV+GHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 790  KLGDLKERLKHAYTTLRKVFRKVFEEMGPDFDLRSDNEKNIMYERKASAWYQVTYHPIWL 611
            K G+LKERLKHAY TLRK FR VFE M PDFDL  D+EKN MYERKASAWYQVTY+P W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 610  QKSKEIQGPDVVGDTVMLSFAWIAVDYLAQIKIRSRGMLNNNSKKPIDALGRYLADKI 437
             +S E+Q PD V  TVMLSFAWIA DYLA+IKIR RG+  ++S KPI++LGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1777 bits (4602), Expect = 0.0
 Identities = 863/1198 (72%), Positives = 1010/1198 (84%), Gaps = 1/1198 (0%)
 Frame = -1

Query: 4027 MGSEGSLRNLVVTQISVGGFENHVTAKMLADYFEDNIGTVCRCRLKTSSTPLESYPAYDI 3848
            MGSEGS ++LVVTQISVGGF+N V AKML++Y E+ +G V RCRLK S+TP +SYP YDI
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 3847 DCELAPKKSDYERVKPHAFLHFASSDAVQRALDAAGRGELILGMKTLKVSLGPKNPHRLN 3668
            D E   +  DYE+V PHAF+HFASS++ + AL AAG  ELILG K L VSLGP+NP+RLN
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3667 ERRRTKIPFRLSDVKVEIGVLVGRDEFVVGWRGPPTGFEFLVDPFNSNCSLLFTRDTAFS 3488
            +RRRT +PF+ SDV VE+GVLV +D+FVVGWRGP TG +FLVDPFN  C +LFT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 3487 FKGESKYAVIKCDFKVEFLVREILSVKQYRDSSGFIILLQLFSSPSIYYRTADDDIEVSV 3308
            F+GE+++A+IKC+FK+EFLVREI  +K+ +D +  +IL QL SSP ++YRTADDDIE SV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 3307 XXXXXXXXXXWIRTIDFTPSGAIGRCNTYRISIPPRKGAILGRALNYLRDCRVHIADVCM 3128
                      WIRT D T SGAIGRCNTYRISI PR G    +A+ Y    RV + ++C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 3127 EQRLQMKDEPDFGMPLSDPFFCIQYKEGVTFKVMFLVNAVMHKGILNQHQMSDQFFELLG 2948
             + L++KDEPDFG+ +SDPFFC Q  EG++FKVMFLVNAV+HKGI+NQHQM+++FF LL 
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2947 RQKEEVNLVALKHIYSYKWPPYDACKKLESVQQWLLKNPKLIERPRQLDDIVEVRRLIIT 2768
             ++EEVNL ALKH++SYKWP  DA +KL  +Q+WLLKNPKL+ER  +LDDIVEVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2767 PAKAYCLPPEAELSNRVLRHYRDVADRFLRVTFMDEGMQMLNKNVLNFYAAPIVWEVTSN 2588
            P KAYCLPP  ELSNRVLR+Y+ VADRFLRVTFMDEGM+ LN+NVL +YAA IV E+TSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2587 SNPQKTAMFRKVKAILSSGFYLCGRKYSFLAFSANQLRDRSAWFFAEEKNVQVANIVNWM 2408
            SNPQ+TA+F++VK+ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAE+  ++V  I++WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2407 GKFSDRNIAKCAARMGQCFSSTYATVDVPSTEVDSKLQDIKRNGHVFSDGIGMISSDLAT 2228
            G+FS+RN+AKCAARMGQCFSSTYATV+VPS+EV+S+L DI+RNG+VFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2227 EVAERLNLSENPPCAYQIRYAGYKGVVACWPSKKDGKRLYLRKSMQKFESKHTVLEICSW 2048
            EVAE+L+L+ NPP AYQIRYAGYKGVVACWP+K DG  L LR SM+KF+S HT+LEICSW
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2047 TRFQPGFLNRQIVTLLSALDVRDNIFWEMQTLMICKLNVMLEDTDVAFDVLTASCAEQGN 1868
            TRFQPGFLNRQIVTLLS+LDV+D IFWEMQ  MI  L+ ML D+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1867 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLRDLRERARIFVPCGRWLMGCLDEFAVLEQG 1688
            TAA+MLSAGFKPQ+EPHLRGML+SIRA+QL DLR +ARIFVP GRWLMGCLDE   LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1687 QCFIQVSTPSLENCFLKHGSKFSKAKKNLQVIKGLVAIAKNPCLHPGDVRILEAVDFPEL 1508
            QCFIQVS+PSLENCF+KHG KFS  KKNLQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1507 HHLDDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWIPMDYSPGEIRKL 1328
             HL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E+++L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1327 PRDVKHQDIIDFFTKNMVTEGLGTICNAHVVHADLSEYGALDEKCIKLAELAATAVDFPK 1148
             R V H DIIDFF+KNMV E LG ICNAHVVHADLSE+GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1147 TGKVVTMPTDYKPKMYPDFMGKEEFQTYMSKKILGKLYRHVID-CDQDEATPSEITFVAD 971
            TGK+VTMP D KPKMYPDFMGKEEFQ+Y SKKILGKLYR V D CD +    + +  V  
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 970  NIPYDRDLEVPGSEVFISEAWNSKCSYDGQLNSLLGQYKVNREEEVVSGHIWSMPKYSSK 791
            +IPYD  L +PGS VFI +AWNSKCSYDGQL+ LLGQYKVNREEEVV+GHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 790  KLGDLKERLKHAYTTLRKVFRKVFEEMGPDFDLRSDNEKNIMYERKASAWYQVTYHPIWL 611
            K G+LKERLKHAY TLRK FR VFE M PDFDL  D+EKN MYERKASAWYQVTY+P W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 610  QKSKEIQGPDVVGDTVMLSFAWIAVDYLAQIKIRSRGMLNNNSKKPIDALGRYLADKI 437
             +S E+Q PD +  TVMLSFAWIA DYLA+IKIR RG+  ++S KPI++LGRYL DKI
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1773 bits (4593), Expect = 0.0
 Identities = 862/1198 (71%), Positives = 1006/1198 (83%), Gaps = 1/1198 (0%)
 Frame = -1

Query: 4027 MGSEGSLRNLVVTQISVGGFENHVTAKMLADYFEDNIGTVCRCRLKTSSTPLESYPAYDI 3848
            MGSEGS + LVVTQISVGGF+N V AKML++Y E+ +G V RCRLK SSTP +SYP YDI
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3847 DCELAPKKSDYERVKPHAFLHFASSDAVQRALDAAGRGELILGMKTLKVSLGPKNPHRLN 3668
            D E   + ++YE+V PHAF+HFASS++ + AL AAG  EL+LG K L VSLGP+NP+RLN
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 3667 ERRRTKIPFRLSDVKVEIGVLVGRDEFVVGWRGPPTGFEFLVDPFNSNCSLLFTRDTAFS 3488
            +RRRT +PF+ SDV VE+GVLV + +FVVGWRGP TG +FLVDPFN  C +LFT+DT FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 3487 FKGESKYAVIKCDFKVEFLVREILSVKQYRDSSGFIILLQLFSSPSIYYRTADDDIEVSV 3308
            F+GE+++A+IKC+FK+EFLVREI  +K+ +D    +ILLQL SSP ++YRTADDDIE SV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3307 XXXXXXXXXXWIRTIDFTPSGAIGRCNTYRISIPPRKGAILGRALNYLRDCRVHIADVCM 3128
                      WIRT D T SGAIGRCNTYRISI PR G    +A+ Y    RV + ++C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3127 EQRLQMKDEPDFGMPLSDPFFCIQYKEGVTFKVMFLVNAVMHKGILNQHQMSDQFFELLG 2948
             + L+++DEPDFG+ +SDPFFC Q  EG++FKV+FL NAV+HKGI+NQHQM ++FF LL 
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 2947 RQKEEVNLVALKHIYSYKWPPYDACKKLESVQQWLLKNPKLIERPRQLDDIVEVRRLIIT 2768
              +EEVNL ALKH++SYKWP  DA +KL  +Q+WLLKNPKL+ER  +LDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2767 PAKAYCLPPEAELSNRVLRHYRDVADRFLRVTFMDEGMQMLNKNVLNFYAAPIVWEVTSN 2588
            P KAYCLPP  ELSNRVLR+Y+ VADRFLRVTFMDEGM+ LN+NVL +YAA IV E+TSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2587 SNPQKTAMFRKVKAILSSGFYLCGRKYSFLAFSANQLRDRSAWFFAEEKNVQVANIVNWM 2408
            SNPQ+TA+F++VK+ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAE+  ++V  I++WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2407 GKFSDRNIAKCAARMGQCFSSTYATVDVPSTEVDSKLQDIKRNGHVFSDGIGMISSDLAT 2228
            G+FS+RN+AKCAARMGQCFSSTYATV+VPS+EV+S+L DI+RNG+VFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2227 EVAERLNLSENPPCAYQIRYAGYKGVVACWPSKKDGKRLYLRKSMQKFESKHTVLEICSW 2048
            EVAE+L+LS NPP AYQIRYAG KGVVACWP+K DG RL LR SM+KF+S HT+LEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2047 TRFQPGFLNRQIVTLLSALDVRDNIFWEMQTLMICKLNVMLEDTDVAFDVLTASCAEQGN 1868
            TRFQPGFLNRQIVTLLS+LDV+D IFWEMQ  MI  L+ ML D+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1867 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLRDLRERARIFVPCGRWLMGCLDEFAVLEQG 1688
            TAA+MLSAGFKPQ+EPHLRGML+SIRA+QL DLR +ARIFVP GRWLMGCLDE   LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1687 QCFIQVSTPSLENCFLKHGSKFSKAKKNLQVIKGLVAIAKNPCLHPGDVRILEAVDFPEL 1508
            QCFIQVS+PSLENCF+KHGSKFS  KKNLQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1507 HHLDDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWIPMDYSPGEIRKL 1328
             HL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDEN+IPPSK+SWIPM+Y P E+++L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 1327 PRDVKHQDIIDFFTKNMVTEGLGTICNAHVVHADLSEYGALDEKCIKLAELAATAVDFPK 1148
             R V H DIIDFF+KNMV E LG ICNAHVVHADLSE+GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1147 TGKVVTMPTDYKPKMYPDFMGKEEFQTYMSKKILGKLYRHVID-CDQDEATPSEITFVAD 971
            TGK+VTMP D KPKMYPDFMGKEEFQ+Y SKKILGKLYR V D CD +    + +  V  
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 970  NIPYDRDLEVPGSEVFISEAWNSKCSYDGQLNSLLGQYKVNREEEVVSGHIWSMPKYSSK 791
            +IPYD  LE+ GS  FI +AWNSKCSYDGQLN LLGQYKVNREEEVV+GHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 790  KLGDLKERLKHAYTTLRKVFRKVFEEMGPDFDLRSDNEKNIMYERKASAWYQVTYHPIWL 611
            K G+LKERLKHAY TLRK FR VFE M PDFDL  D+EKN MYERKASAWYQVTYHP W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 610  QKSKEIQGPDVVGDTVMLSFAWIAVDYLAQIKIRSRGMLNNNSKKPIDALGRYLADKI 437
             +S E+Q PD V  TVMLSFAWIA DYLA+IKIR RG+  ++S KPI++LGRYLADKI
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1769 bits (4583), Expect = 0.0
 Identities = 859/1198 (71%), Positives = 1006/1198 (83%), Gaps = 1/1198 (0%)
 Frame = -1

Query: 4027 MGSEGSLRNLVVTQISVGGFENHVTAKMLADYFEDNIGTVCRCRLKTSSTPLESYPAYDI 3848
            MGSEGS ++LVVTQISVGGF+N V AKML++Y E+ +G V RCRLK S+TP +SYP YD+
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 3847 DCELAPKKSDYERVKPHAFLHFASSDAVQRALDAAGRGELILGMKTLKVSLGPKNPHRLN 3668
            D     +  DYE+V PHAF+HFASS++ + AL AAG   LILG K L VSLGP+NP+RLN
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 3667 ERRRTKIPFRLSDVKVEIGVLVGRDEFVVGWRGPPTGFEFLVDPFNSNCSLLFTRDTAFS 3488
            +RRRT +PF+ SDV VE+GVLV +D+FVVGWRGP TG +F VDPFN  C +LFT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 3487 FKGESKYAVIKCDFKVEFLVREILSVKQYRDSSGFIILLQLFSSPSIYYRTADDDIEVSV 3308
            F+GE+K+A+IKC+FK+EF+VREI  +K+++D +  +ILLQL SSP ++YRTADDDIE SV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3307 XXXXXXXXXXWIRTIDFTPSGAIGRCNTYRISIPPRKGAILGRALNYLRDCRVHIADVCM 3128
                      WIRT D T SGAIGRCNTYRISI PR G    +A+ Y    RV + ++C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3127 EQRLQMKDEPDFGMPLSDPFFCIQYKEGVTFKVMFLVNAVMHKGILNQHQMSDQFFELLG 2948
             + L+++DEPDFG+ +SDPFFC Q  EG++FKVMFLVNAV+HKGI+NQHQM+++FF LL 
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2947 RQKEEVNLVALKHIYSYKWPPYDACKKLESVQQWLLKNPKLIERPRQLDDIVEVRRLIIT 2768
              +EEVNL ALKH++SYKWP  DA +KL  +Q+WLLKNPKL+ER  +LDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2767 PAKAYCLPPEAELSNRVLRHYRDVADRFLRVTFMDEGMQMLNKNVLNFYAAPIVWEVTSN 2588
            P KAYCLPP  ELSNRVLR+Y+ VADRFLRVTFMDEGM+ LN+NVL +YAA IV E+TSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2587 SNPQKTAMFRKVKAILSSGFYLCGRKYSFLAFSANQLRDRSAWFFAEEKNVQVANIVNWM 2408
            SNPQ+TA+F++VK+ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAE+  ++V  I++WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2407 GKFSDRNIAKCAARMGQCFSSTYATVDVPSTEVDSKLQDIKRNGHVFSDGIGMISSDLAT 2228
            G+FS+RN+AKCAARMGQCFSSTYATV+VPS+EV+S+L DI+RNG+VFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 2227 EVAERLNLSENPPCAYQIRYAGYKGVVACWPSKKDGKRLYLRKSMQKFESKHTVLEICSW 2048
            EVAE+L+LS NPP AYQIRYAG KGVVACWP+K DG  L LR SM+KF+S HT+LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2047 TRFQPGFLNRQIVTLLSALDVRDNIFWEMQTLMICKLNVMLEDTDVAFDVLTASCAEQGN 1868
            TRFQPGFLNRQIVTLLS+LDV+D IFWEMQ  MI  LN ML D+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 1867 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLRDLRERARIFVPCGRWLMGCLDEFAVLEQG 1688
            TAAIMLSAGFKPQ+EPHLRGML+SIRA+QL DLR +ARIFVP GRWLMGCLDE   LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1687 QCFIQVSTPSLENCFLKHGSKFSKAKKNLQVIKGLVAIAKNPCLHPGDVRILEAVDFPEL 1508
            QCFIQVS+PSLENCF+KHG KFS  KKNLQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1507 HHLDDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWIPMDYSPGEIRKL 1328
            HHL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E+++L
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1327 PRDVKHQDIIDFFTKNMVTEGLGTICNAHVVHADLSEYGALDEKCIKLAELAATAVDFPK 1148
             R V H DIIDFF+KNMV E LG ICNAHVVHADLSE+GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1147 TGKVVTMPTDYKPKMYPDFMGKEEFQTYMSKKILGKLYRHVID-CDQDEATPSEITFVAD 971
            TGK+VTMP D KPKMYPDFMGKEEFQ+Y SKKILGKLYR V D CD +    + +  V +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 970  NIPYDRDLEVPGSEVFISEAWNSKCSYDGQLNSLLGQYKVNREEEVVSGHIWSMPKYSSK 791
            +IPYD  LE+PGS VF+ +AWN KCSYDGQL+ LLGQYKVNREEEVV+GHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 790  KLGDLKERLKHAYTTLRKVFRKVFEEMGPDFDLRSDNEKNIMYERKASAWYQVTYHPIWL 611
            K G+LKERLKHAY  LRK FR VFE M PDFDL  D+EKN MYERKASAWYQVTY+P W+
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 610  QKSKEIQGPDVVGDTVMLSFAWIAVDYLAQIKIRSRGMLNNNSKKPIDALGRYLADKI 437
             +S E+Q PD V  TVMLSFAWIA DYLA+I IR RG+  ++S KPI++LGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1764 bits (4570), Expect = 0.0
 Identities = 859/1198 (71%), Positives = 1005/1198 (83%), Gaps = 1/1198 (0%)
 Frame = -1

Query: 4027 MGSEGSLRNLVVTQISVGGFENHVTAKMLADYFEDNIGTVCRCRLKTSSTPLESYPAYDI 3848
            MGSEGS + LVVTQIS GGF+N V AKML++Y E+ +G V RCRLK SSTP +SYP YDI
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3847 DCELAPKKSDYERVKPHAFLHFASSDAVQRALDAAGRGELILGMKTLKVSLGPKNPHRLN 3668
            D E   + ++YE+V PHAF+HFASS++ + AL AAG  ELILG K L VSLGP+NP+RLN
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3667 ERRRTKIPFRLSDVKVEIGVLVGRDEFVVGWRGPPTGFEFLVDPFNSNCSLLFTRDTAFS 3488
            +RRRT +PF+ SDV VE+GVLV +D+FVVGWRGP TG +F VDPFN  C +LFT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 3487 FKGESKYAVIKCDFKVEFLVREILSVKQYRDSSGFIILLQLFSSPSIYYRTADDDIEVSV 3308
            F+GE+++A+IKC+FK+EF+VREI  +K+ +D +  +ILLQL SSP ++YRTADDDIE SV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3307 XXXXXXXXXXWIRTIDFTPSGAIGRCNTYRISIPPRKGAILGRALNYLRDCRVHIADVCM 3128
                      WIRT D T SGAIGRCNTYRISI PR G    +A+ Y    RV + ++C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3127 EQRLQMKDEPDFGMPLSDPFFCIQYKEGVTFKVMFLVNAVMHKGILNQHQMSDQFFELLG 2948
             + L++KDEPDFG+ +SDPFFC Q  EG++FKVMFLVNAV+HKGI+NQHQM+++FF LL 
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2947 RQKEEVNLVALKHIYSYKWPPYDACKKLESVQQWLLKNPKLIERPRQLDDIVEVRRLIIT 2768
             ++EEVN  ALKH++SYKWP  DA +KL  +Q+WLLKNPKL++R  +LDDIVEVRRL+IT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 2767 PAKAYCLPPEAELSNRVLRHYRDVADRFLRVTFMDEGMQMLNKNVLNFYAAPIVWEVTSN 2588
            P KAYCLPP  ELSNRVLR+Y+ VADRFLRVTFMDEGM+ LN+NVL +YAA IV E+TSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2587 SNPQKTAMFRKVKAILSSGFYLCGRKYSFLAFSANQLRDRSAWFFAEEKNVQVANIVNWM 2408
            SNPQ+TA+F++VK+ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAE+  ++V  I++WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2407 GKFSDRNIAKCAARMGQCFSSTYATVDVPSTEVDSKLQDIKRNGHVFSDGIGMISSDLAT 2228
            G+FS+RN+AKCAARMGQCFSSTYATV+VPS EV+S+L DI+RNG+VFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2227 EVAERLNLSENPPCAYQIRYAGYKGVVACWPSKKDGKRLYLRKSMQKFESKHTVLEICSW 2048
            EVAE+L+LS NPP AYQIRYAG KGVVACWP+K DG RL LR SM+KF+S HT+LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2047 TRFQPGFLNRQIVTLLSALDVRDNIFWEMQTLMICKLNVMLEDTDVAFDVLTASCAEQGN 1868
            TRFQPGFLNRQIVTLLS+LDV+D IFWEMQ  MI  L+ ML D+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1867 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLRDLRERARIFVPCGRWLMGCLDEFAVLEQG 1688
            TAAIMLSAGFKPQ+EPHLRGML+SIRA+QL DLR +ARIFVP GRWLMGCLDE   LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1687 QCFIQVSTPSLENCFLKHGSKFSKAKKNLQVIKGLVAIAKNPCLHPGDVRILEAVDFPEL 1508
            QCFIQVS+PSLENCF+KHG KFS  K+NLQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1507 HHLDDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWIPMDYSPGEIRKL 1328
             HL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y P E+++L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1327 PRDVKHQDIIDFFTKNMVTEGLGTICNAHVVHADLSEYGALDEKCIKLAELAATAVDFPK 1148
             R V H DIIDFF+KNMV E LG ICNAHVVHADLSE+GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1147 TGKVVTMPTDYKPKMYPDFMGKEEFQTYMSKKILGKLYRHVID-CDQDEATPSEITFVAD 971
            TGK+VTMP D KPKMYPDFMGKEEFQ+Y SKKILGKLYR V D CD +    + +  V  
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 970  NIPYDRDLEVPGSEVFISEAWNSKCSYDGQLNSLLGQYKVNREEEVVSGHIWSMPKYSSK 791
            +IPYD  LE+ GS  FI +AWNSKCSYDGQL+ LLGQYKVNREEEVV+GHIWSMPKYS+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 790  KLGDLKERLKHAYTTLRKVFRKVFEEMGPDFDLRSDNEKNIMYERKASAWYQVTYHPIWL 611
            K G+LKERLKHAY TLRK FR VFE M PDFDL  D+EKN MYERKASAWYQVTYHP W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 610  QKSKEIQGPDVVGDTVMLSFAWIAVDYLAQIKIRSRGMLNNNSKKPIDALGRYLADKI 437
             +S E+Q PD V +TVMLSFAWIA DYLA+IKIR R +  ++S KPI++LGRYL D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197