BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00000269
         (4064 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  2229   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  2227   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  2211   0.0  
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...  2206   0.0  
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...  2204   0.0  

>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 2229 bits (5775), Expect = 0.0
 Identities = 1098/1170 (93%), Positives = 1129/1170 (96%)
 Frame = -3

Query: 3864 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 3685
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 3684 FAETVYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 3505
            FAET+YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 80   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 3504 GEEVTETQDFGKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 3325
            GEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 199

Query: 3324 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQY 3145
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 3144 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2965
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQ 319

Query: 2964 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2785
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 2784 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 2605
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 439

Query: 2604 KAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 2425
            KAKT+TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 440  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 499

Query: 2424 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 2245
            KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI
Sbjct: 500  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 559

Query: 2244 SPAVIPQATKIFVNGCWVGIHRDPDMXXXXXXXXXXRIDVNTEVGVVRDIRLKELRIYTD 2065
            SPAVIPQATKIFVNGCWVGIHRDPDM          R+DVNTEVGVVRDIRLKELRIYTD
Sbjct: 560  SPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 619

Query: 2064 YGRCSRPLFIVEKQRLLIKKKDIRSLQARETPEEGGWHDLVAKGFXXXXXXXXXXXXXXX 1885
            YGRCSRPLFIVEKQRLLIK+KDI++LQ RETPE+GGWHDLVAKGF               
Sbjct: 620  YGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMIS 679

Query: 1884 XXINDLVTARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1705
              INDLV+ARLNPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 680  MTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 739

Query: 1704 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1525
            MGIYVTNYQFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 740  MGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 799

Query: 1524 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGKPDRANTMGMRHGSYDKLDDDG 1345
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG+PDRANTMGMRHGSYDKLDDDG
Sbjct: 800  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDG 859

Query: 1344 LAPPGTRVSGEDVIIGKTTPINQEEASAPGSRYTKRDHSTSLRHSENGIVDQVLLTTNAD 1165
            LAPPGTRVSGEDV+IGKTTPI Q+EA  P +RYT+RDHSTSLRHSE G+VDQVLLTTNAD
Sbjct: 860  LAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNAD 919

Query: 1164 GLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTIEGITPDIIVNPHAIPS 985
            GLRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EGITPDIIVNPHAIPS
Sbjct: 920  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPS 979

Query: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGR 805
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR
Sbjct: 980  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1039

Query: 804  PLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 625
             LT+ IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1040 RLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1099

Query: 624  AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYAC 445
            AHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECR CKNKTDIVQVHIPYAC
Sbjct: 1100 AHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1159

Query: 444  KLLFQELMSMAIAPRMLTRDIKQIKSQQKK 355
            KLLFQELMSMAIAPRMLT+D+KQ K ++KK
Sbjct: 1160 KLLFQELMSMAIAPRMLTKDVKQAKDKKKK 1189


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 2227 bits (5770), Expect = 0.0
 Identities = 1102/1171 (94%), Positives = 1125/1171 (96%)
 Frame = -3

Query: 3864 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 3685
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 3684 FAETVYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 3505
            FAET+YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 3504 GEEVTETQDFGKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 3325
            GEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 3324 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQY 3145
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262

Query: 3144 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2965
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 322

Query: 2964 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2785
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 2784 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 2605
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 442

Query: 2604 KAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 2425
            KAKT+TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502

Query: 2424 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 2245
            KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI
Sbjct: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562

Query: 2244 SPAVIPQATKIFVNGCWVGIHRDPDMXXXXXXXXXXRIDVNTEVGVVRDIRLKELRIYTD 2065
            SPAVIPQATKIFVNGCWVGIHRDPDM          R+DVNTEVGVVRDIRLKELRIYTD
Sbjct: 563  SPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622

Query: 2064 YGRCSRPLFIVEKQRLLIKKKDIRSLQARETPEEGGWHDLVAKGFXXXXXXXXXXXXXXX 1885
            YGRCSRPLFIVEKQRLLIKKKDI +LQ RE+ EEGGWHDLVAKGF               
Sbjct: 623  YGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMIS 682

Query: 1884 XXINDLVTARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1705
              I+DLV AR+NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 683  MTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742

Query: 1704 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1525
            MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802

Query: 1524 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGKPDRANTMGMRHGSYDKLDDDG 1345
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG+PDRANTMGMRHGSYDKLDDDG
Sbjct: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDG 862

Query: 1344 LAPPGTRVSGEDVIIGKTTPINQEEASAPGSRYTKRDHSTSLRHSENGIVDQVLLTTNAD 1165
            LAPPGTRVSGEDVIIGKTTPI QEEA    +RYT+RDHS SLRHSE GIVDQVLLTTNAD
Sbjct: 863  LAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNAD 922

Query: 1164 GLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTIEGITPDIIVNPHAIPS 985
            GLRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EGITPDIIVNPHAIPS
Sbjct: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982

Query: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGR 805
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR
Sbjct: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042

Query: 804  PLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 625
             LTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102

Query: 624  AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYAC 445
            AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR CKNKTDIVQVHIPYAC
Sbjct: 1103 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162

Query: 444  KLLFQELMSMAIAPRMLTRDIKQIKSQQKKG 352
            KLLFQELM+MAIAPRMLT+D+K  K Q+KKG
Sbjct: 1163 KLLFQELMAMAIAPRMLTKDVKPTKDQKKKG 1193


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 2211 bits (5730), Expect = 0.0
 Identities = 1091/1171 (93%), Positives = 1125/1171 (96%)
 Frame = -3

Query: 3864 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 3685
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 3684 FAETVYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 3505
            FAET+YKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 80   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 3504 GEEVTETQDFGKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 3325
            GEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP DQGGYFIINGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 199

Query: 3324 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQY 3145
            IAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA+TQNRPPSTMFVRMLSR+SAKGG+SGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 3144 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2965
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 319

Query: 2964 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2785
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 2784 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 2605
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 439

Query: 2604 KAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 2425
            KAKT+TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 440  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 499

Query: 2424 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 2245
            KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI
Sbjct: 500  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 559

Query: 2244 SPAVIPQATKIFVNGCWVGIHRDPDMXXXXXXXXXXRIDVNTEVGVVRDIRLKELRIYTD 2065
            SPAVIPQATKIFVNG WVGIHRDPDM          R+DVNTEVGVVRDIRLKELRIYTD
Sbjct: 560  SPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 619

Query: 2064 YGRCSRPLFIVEKQRLLIKKKDIRSLQARETPEEGGWHDLVAKGFXXXXXXXXXXXXXXX 1885
            YGRCSRPLFIVEKQRL+IKKKDI++LQ RE+P+EGGWHDLVAKG+               
Sbjct: 620  YGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMIS 679

Query: 1884 XXINDLVTARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1705
              INDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 680  MTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 739

Query: 1704 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1525
            MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 740  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 799

Query: 1524 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGKPDRANTMGMRHGSYDKLDDDG 1345
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG+PDRA+TMGMRHGSYDKLDDDG
Sbjct: 800  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDG 859

Query: 1344 LAPPGTRVSGEDVIIGKTTPINQEEASAPGSRYTKRDHSTSLRHSENGIVDQVLLTTNAD 1165
            LAPPGTRVSGEDVIIGKTTPI+Q++A    SRYT++DHSTSLRHSE G+VDQVLLTTNAD
Sbjct: 860  LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 919

Query: 1164 GLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTIEGITPDIIVNPHAIPS 985
            GLRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EGITPDIIVNPHAIPS
Sbjct: 920  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 979

Query: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGR 805
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR
Sbjct: 980  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1039

Query: 804  PLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 625
             L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1040 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1099

Query: 624  AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYAC 445
            AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR CKNKTDIVQVHIPYAC
Sbjct: 1100 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1159

Query: 444  KLLFQELMSMAIAPRMLTRDIKQIKSQQKKG 352
            KLLFQELM+MAIAPRMLT+D+K  K Q+KKG
Sbjct: 1160 KLLFQELMAMAIAPRMLTKDVKLAKDQKKKG 1190


>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 2206 bits (5717), Expect = 0.0
 Identities = 1089/1171 (92%), Positives = 1124/1171 (95%)
 Frame = -3

Query: 3864 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 3685
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD
Sbjct: 24   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 83

Query: 3684 FAETVYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 3505
            FAET+YKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 84   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 143

Query: 3504 GEEVTETQDFGKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 3325
            GEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP DQGGYFIINGSEKVL
Sbjct: 144  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 203

Query: 3324 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQY 3145
            IAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQY
Sbjct: 204  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 263

Query: 3144 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2965
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 264  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 323

Query: 2964 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2785
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 324  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 383

Query: 2784 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 2605
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 384  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 443

Query: 2604 KAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 2425
            KAKT+TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 444  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 503

Query: 2424 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 2245
            KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE GTENFEEI
Sbjct: 504  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTENFEEI 563

Query: 2244 SPAVIPQATKIFVNGCWVGIHRDPDMXXXXXXXXXXRIDVNTEVGVVRDIRLKELRIYTD 2065
            SPAVIPQATKIFV+G W+GIHRDPDM          R+DVNTEVGVVRDIRLKELRIYTD
Sbjct: 564  SPAVIPQATKIFVBGTWMGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 623

Query: 2064 YGRCSRPLFIVEKQRLLIKKKDIRSLQARETPEEGGWHDLVAKGFXXXXXXXXXXXXXXX 1885
            YGRCSRPLFIVEKQ+LLIKKKDI+ LQ RETPEEGGWHDLVAKG+               
Sbjct: 624  YGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYIDTEEEETTMIS 683

Query: 1884 XXINDLVTARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1705
              INDLV A +NPE+AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 684  MTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 743

Query: 1704 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1525
            MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 744  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 803

Query: 1524 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGKPDRANTMGMRHGSYDKLDDDG 1345
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG+PDRA+TMGMRHGSYDKLDDDG
Sbjct: 804  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDG 863

Query: 1344 LAPPGTRVSGEDVIIGKTTPINQEEASAPGSRYTKRDHSTSLRHSENGIVDQVLLTTNAD 1165
            LAPPGTRVSGEDVIIGKTTPI+Q++A    SRYT++DHSTSLRHSE G+VDQVLLTTNAD
Sbjct: 864  LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 923

Query: 1164 GLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTIEGITPDIIVNPHAIPS 985
            GLRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TIEGITPDIIVNPHAIPS
Sbjct: 924  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 983

Query: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGR 805
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR
Sbjct: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1043

Query: 804  PLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 625
             L A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1044 RLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1103

Query: 624  AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYAC 445
            AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR CKNKTDIVQVHIPYAC
Sbjct: 1104 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1163

Query: 444  KLLFQELMSMAIAPRMLTRDIKQIKSQQKKG 352
            KLLFQELM+MAIAPRMLT+D+KQ + Q+KKG
Sbjct: 1164 KLLFQELMAMAIAPRMLTKDVKQARDQKKKG 1194


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score = 2204 bits (5712), Expect = 0.0
 Identities = 1090/1171 (93%), Positives = 1122/1171 (95%)
 Frame = -3

Query: 3864 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 3685
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 3684 FAETVYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 3505
            FAET+YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 142

Query: 3504 GEEVTETQDFGKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 3325
            GEEVTE QDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 143  GEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 3324 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQY 3145
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSR+S+KGG+SGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 262

Query: 3144 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2965
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS TQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQ 322

Query: 2964 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2785
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 2784 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 2605
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 442

Query: 2604 KAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 2425
            KAKT+TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502

Query: 2424 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 2245
            KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI
Sbjct: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562

Query: 2244 SPAVIPQATKIFVNGCWVGIHRDPDMXXXXXXXXXXRIDVNTEVGVVRDIRLKELRIYTD 2065
            SPAVIPQATKIFVNGCW+GIHRDPDM          R+DVNTEVGVVRDIRLKELRIYTD
Sbjct: 563  SPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLKELRIYTD 622

Query: 2064 YGRCSRPLFIVEKQRLLIKKKDIRSLQARETPEEGGWHDLVAKGFXXXXXXXXXXXXXXX 1885
            YGRCSRPLFIV+KQRLLIKKKDI +LQ RE+PE+GGWHDLV+KGF               
Sbjct: 623  YGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMIS 682

Query: 1884 XXINDLVTARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1705
              INDLV AR+NPE+AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 683  MTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742

Query: 1704 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1525
            MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV+IACYSGYNQED
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQED 802

Query: 1524 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGKPDRANTMGMRHGSYDKLDDDG 1345
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG+PDRANTMGMRHGSYDKLDDDG
Sbjct: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDG 862

Query: 1344 LAPPGTRVSGEDVIIGKTTPINQEEASAPGSRYTKRDHSTSLRHSENGIVDQVLLTTNAD 1165
            LAPPGTRVSGEDVIIGKTTPI+QEEA     RYT+RDHS SLRHSE GIVDQVLLTTNAD
Sbjct: 863  LAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNAD 922

Query: 1164 GLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTIEGITPDIIVNPHAIPS 985
            GLRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EGITPDIIVNPHAIPS
Sbjct: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982

Query: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGR 805
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR
Sbjct: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042

Query: 804  PLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 625
             L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1043 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102

Query: 624  AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYAC 445
            AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR CKNKTDIVQV+IPYAC
Sbjct: 1103 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYAC 1162

Query: 444  KLLFQELMSMAIAPRMLTRDIKQIKSQQKKG 352
            KLLFQELM+MAIAPRMLT+++K   + QKKG
Sbjct: 1163 KLLFQELMAMAIAPRMLTKEVK--TTNQKKG 1191