BLASTX nr result
ID: Catharanthus23_contig00040478
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00040478
(268 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD43036.1| reverse transcriptase [Orobanche cernua var. cumana] 54 2e-09
emb|CAD40414.3| OSJNBa0065J03.10 [Oryza sativa Japonica Group] 49 7e-09
gb|ABA98546.2| retrotransposon protein, putative, Ty3-gypsy subc... 50 2e-08
gb|ABD43159.1| reverse transcriptase [Orobanche tunetana] 50 3e-08
gb|ABD43167.1| reverse transcriptase [Orobanche tunetana] 49 3e-08
gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Jap... 48 4e-08
gb|ABD43055.1| reverse transcriptase [Orobanche cernua var. cernua] 48 5e-08
gb|ABA99219.1| retrotransposon protein, putative, Ty3-gypsy subc... 48 5e-08
gb|ABA96451.1| retrotransposon protein, putative, Ty3-gypsy subc... 49 5e-08
gb|ABD43121.1| reverse transcriptase [Orobanche bungeana] 48 6e-08
gb|ABB47016.1| retrotransposon protein, putative, Ty3-gypsy subc... 49 7e-08
emb|CAD39902.2| OSJNBa0065B15.6 [Oryza sativa Japonica Group] 47 7e-08
gb|AAV24823.1| putative polyprotein [Oryza sativa Japonica Group] 49 7e-08
gb|ABB47006.1| retrotransposon protein, putative, Ty3-gypsy subc... 48 9e-08
emb|CAD40008.3| OSJNBb0052B05.11 [Oryza sativa Japonica Group] 48 9e-08
gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum] 43 1e-07
gb|ABA97318.1| retrotransposon protein, putative, Ty3-gypsy subc... 48 1e-07
gb|ABD43047.1| reverse transcriptase [Orobanche cernua var. aust... 61 1e-07
emb|CAE04765.3| OSJNBa0079C19.6 [Oryza sativa Japonica Group] 47 2e-07
emb|CAE05905.1| OSJNBa0061C08.12 [Oryza sativa Japonica Group] 47 2e-07
>gb|ABD43036.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 138
Score = 53.9 bits (128), Expect(2) = 2e-09
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHE-HL*RML 2
+MPFGLT+A A FMELM+R+F ++FVV+ I DIL+Y N E HE HL ++L
Sbjct: 71 VMPFGLTNAPAVFMELMNRVFINFLDRFVVVFIDDILIYSRNREEHELHLHQVL 124
Score = 33.9 bits (76), Expect(2) = 2e-09
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIPMKFSNI*YRHYKSVL 157
+SK+D+R GY+Q+R +E DI Y HY+ V+
Sbjct: 36 FSKIDLRSGYHQLRIRESDIARTAFCTSYGHYEFVV 71
>emb|CAD40414.3| OSJNBa0065J03.10 [Oryza sativa Japonica Group]
Length = 917
Score = 48.9 bits (115), Expect(2) = 7e-09
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHE-HL*RML 2
LM FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E HE HL R+L
Sbjct: 445 LMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLCRVL 498
Score = 36.6 bits (83), Expect(2) = 7e-09
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIPMKFSNI*YRHYKSVL 157
+SK+D+R GY+Q+R +E DIP K Y Y+ L
Sbjct: 410 FSKIDLRSGYHQLRIREEDIPKKAFTTRYGLYECTL 445
>gb|ABA98546.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 50.1 bits (118), Expect(2) = 2e-08
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+ALA FM LM+++F +KFVV+ I DIL+Y + E H+H R++
Sbjct: 1010 VMSFGLTNALAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 1062
Score = 33.5 bits (75), Expect(2) = 2e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 975 FSKIDLRSGYHQLRIREEDIP 995
>gb|ABD43159.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 50.1 bits (118), Expect(2) = 3e-08
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHE-HL*RML 2
+MPFGLT+A ATFM+LM+R+F +KFV++ I DIL+Y E H HL ++L
Sbjct: 71 VMPFGLTNAPATFMDLMNRVFKDFLDKFVIVFIDDILIYSKTKEDHALHLRKVL 124
Score = 33.1 bits (74), Expect(2) = 3e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIPMKFSNI*YRHYK 166
+SK+D+ GY+Q++ KE DIP + Y H++
Sbjct: 36 FSKIDLCSGYHQLKIKEEDIPKTAFSTIYGHFE 68
>gb|ABD43167.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 48.5 bits (114), Expect(2) = 3e-08
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVH-EHL 14
+MPFGL++A A FM+LM+R+F +KFV++ I DIL+Y + E H EHL
Sbjct: 71 VMPFGLSNAPAVFMDLMNRVFQPYLDKFVIVFIDDILVYSKDEEQHREHL 120
Score = 34.7 bits (78), Expect(2) = 3e-08
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIPMKFSNI*YRHYKSVL 157
+SK+D+R GY+Q++ +E DIP Y H++ V+
Sbjct: 36 FSKIDLRSGYHQLKIRECDIPKTAFRTHYGHFEFVV 71
>gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
gi|20042905|gb|AAM08733.1|AC116601_26 Putative
polyprotein [Oryza sativa Japonica Group]
gi|31429938|gb|AAP51922.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1443
Score = 47.8 bits (112), Expect(2) = 4e-08
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHE 20
+M FGLT+ALA FM LM+++F +KFVV+ I DIL+Y E HE
Sbjct: 627 VMSFGLTNALAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHE 673
Score = 35.0 bits (79), Expect(2) = 4e-08
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIPMKFSNI*Y 178
+SK+D+R GY+Q+R KE DIP I Y
Sbjct: 592 FSKIDLRSGYHQLRIKEEDIPKTAFTIRY 620
>gb|ABD43055.1| reverse transcriptase [Orobanche cernua var. cernua]
Length = 143
Score = 48.1 bits (113), Expect(2) = 5e-08
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHE 20
+MPFGLT+A FM+LM+R+F +KFV + I DIL+Y + E HE
Sbjct: 71 VMPFGLTNAPVVFMQLMNRVFIEHLDKFVAVFIDDILVYSKDEEEHE 117
Score = 34.7 bits (78), Expect(2) = 5e-08
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIPMKFSNI*YRHYKSVL 157
+SK+D+R Y+Q+R E DIP Y HY+ V+
Sbjct: 36 FSKIDLRSEYHQLRINESDIPKSAFRTGYGHYEFVV 71
>gb|ABA99219.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2360
Score = 47.8 bits (112), Expect(2) = 5e-08
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RM 5
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y E HE L R+
Sbjct: 657 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEELLRL 708
Score = 34.7 bits (78), Expect(2) = 5e-08
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R KE DIP
Sbjct: 622 FSKIDLRSGYHQLRIKEEDIP 642
>gb|ABA96451.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1351
Score = 48.9 bits (115), Expect(2) = 5e-08
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E HEH R++
Sbjct: 673 VMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEHHLRLV 725
Score = 33.5 bits (75), Expect(2) = 5e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 638 FSKIDLRSGYHQLRIREEDIP 658
>gb|ABD43121.1| reverse transcriptase [Orobanche bungeana]
Length = 143
Score = 47.8 bits (112), Expect(2) = 6e-08
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHE 20
+M FGLT+A A FMELM+RI +KFVV+ I DIL+Y + E HE
Sbjct: 71 VMSFGLTNAPAAFMELMNRILIEFLDKFVVVFIDDILIYSKSREEHE 117
Score = 34.7 bits (78), Expect(2) = 6e-08
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIPMKFSNI*YRHYK 166
+SK+D+R GY+Q+R +E DIP Y +Y+
Sbjct: 36 FSKIDLRSGYHQLRIREEDIPKAAFRTRYGNYE 68
>gb|ABB47016.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 48.5 bits (114), Expect(2) = 7e-08
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E H+H R+L
Sbjct: 1033 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLL 1085
Score = 33.5 bits (75), Expect(2) = 7e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 998 FSKIDLRSGYHQLRIREEDIP 1018
>emb|CAD39902.2| OSJNBa0065B15.6 [Oryza sativa Japonica Group]
Length = 1467
Score = 47.4 bits (111), Expect(2) = 7e-08
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHE 20
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y EVHE
Sbjct: 819 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEVHE 865
Score = 34.7 bits (78), Expect(2) = 7e-08
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R KE DIP
Sbjct: 784 FSKIDLRSGYHQLRIKEEDIP 804
>gb|AAV24823.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1374
Score = 48.5 bits (114), Expect(2) = 7e-08
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+ALA FM LM+++F +KFVV+ I DIL+Y + E HE R++
Sbjct: 591 VMSFGLTNALAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 643
Score = 33.5 bits (75), Expect(2) = 7e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 556 FSKIDLRSGYHQLRIREEDIP 576
>gb|ABB47006.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1826
Score = 48.1 bits (113), Expect(2) = 9e-08
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E H+H R++
Sbjct: 1010 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIGDILIYSQSEEDHQHHLRLV 1062
Score = 33.5 bits (75), Expect(2) = 9e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 975 FSKIDLRSGYHQLRIREEDIP 995
>emb|CAD40008.3| OSJNBb0052B05.11 [Oryza sativa Japonica Group]
Length = 1232
Score = 48.1 bits (113), Expect(2) = 9e-08
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = -1
Query: 166 VCLMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+ +M FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E H+H R++
Sbjct: 535 ITVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 589
Score = 33.5 bits (75), Expect(2) = 9e-08
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 502 FSKIDLRSGYHQLRIREEDIP 522
>gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]
Length = 1487
Score = 42.7 bits (99), Expect(2) = 1e-07
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVH 23
+M FG T+A A FM+LM+R+F + FV++ I DIL+Y N E H
Sbjct: 702 VMSFGFTNAPAAFMDLMNRVFKPYLDMFVIVFIDDILIYSRNKEDH 747
Score = 38.5 bits (88), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 267 CYSKLDVRQGYYQVRTKERDIPMKFSNI*YRHYK 166
C+SK+D+R GY+Q+R + DIP I Y HY+
Sbjct: 666 CFSKIDLRSGYHQLRVRGCDIPKITFRIIYGHYE 699
>gb|ABA97318.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 47.8 bits (112), Expect(2) = 1e-07
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E H+H R++
Sbjct: 606 VMSFGLTNAPAFFMNLMNKVFMKYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 658
Score = 33.5 bits (75), Expect(2) = 1e-07
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 571 FSKIDLRSGYHQLRIREEDIP 591
>gb|ABD43047.1| reverse transcriptase [Orobanche cernua var. australiana]
Length = 143
Score = 61.2 bits (147), Expect = 1e-07
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = -1
Query: 259 QIRCKTRILSGTNKRKRYSHEIFQHLI*AL*VCLMPFGLTSALATFMELMHRIFCL*SNK 80
Q+R + ++ T R RY H F +MPFGLT+A A FMELM+R+F ++
Sbjct: 47 QLRIRESDIARTAFRTRYGHYEF---------VVMPFGLTNAPAVFMELMNRVFINFLDR 97
Query: 79 FVVISIADILMY*PNLEVHE-HL*RML 2
FVV+ I DIL+Y NLE HE HL ++L
Sbjct: 98 FVVVFIDDILIYSRNLEEHELHLHQVL 124
>emb|CAE04765.3| OSJNBa0079C19.6 [Oryza sativa Japonica Group]
Length = 1998
Score = 47.4 bits (111), Expect(2) = 2e-07
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E H+H R++
Sbjct: 944 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 996
Score = 33.5 bits (75), Expect(2) = 2e-07
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 909 FSKIDLRSGYHQLRIREEDIP 929
>emb|CAE05905.1| OSJNBa0061C08.12 [Oryza sativa Japonica Group]
Length = 1971
Score = 47.4 bits (111), Expect(2) = 2e-07
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = -1
Query: 160 LMPFGLTSALATFMELMHRIFCL*SNKFVVISIADILMY*PNLEVHEHL*RML 2
+M FGLT+A A FM LM+++F +KFVV+ I DIL+Y + E H+H R++
Sbjct: 917 VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLV 969
Score = 33.5 bits (75), Expect(2) = 2e-07
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -2
Query: 264 YSKLDVRQGYYQVRTKERDIP 202
+SK+D+R GY+Q+R +E DIP
Sbjct: 882 FSKIDLRSGYHQLRIREEDIP 902