BLASTX nr result
ID: Catharanthus23_contig00040290
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00040290
(297 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera] 77 2e-12
emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera] 77 2e-12
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera] 73 5e-11
emb|CAN69199.1| hypothetical protein VITISV_025494 [Vitis vinifera] 72 8e-11
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 70 3e-10
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 67 2e-09
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 65 7e-09
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 64 2e-08
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 64 2e-08
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 64 3e-08
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 63 4e-08
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 63 5e-08
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 62 6e-08
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 62 8e-08
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam... 62 1e-07
emb|CAN77659.1| hypothetical protein VITISV_030914 [Vitis vinifera] 62 1e-07
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 62 1e-07
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 60 2e-07
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 60 2e-07
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 60 3e-07
>emb|CAN80993.1| hypothetical protein VITISV_022128 [Vitis vinifera]
Length = 1017
Score = 77.4 bits (189), Expect = 2e-12
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C + HQ EGKL PRS K +F+ YP GVKGY +W K PGV+I++SRD++FNE ++ R
Sbjct: 167 CITYVHQSEGKLKPRSIKCIFLGYPEGVKGYRLWYKESPGVKIIISRDVMFNENEILSMR 226
Query: 117 IET 109
T
Sbjct: 227 TNT 229
>emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera]
Length = 817
Score = 77.0 bits (188), Expect = 2e-12
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Frame = -1
Query: 291 AFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE---LDMHCR 121
A+ HQ EGKL+PRS K +F+ +P GVKGY +W K PGV+I++SRD++FNE L M
Sbjct: 229 AYVHQSEGKLEPRSIKCIFLGHPEGVKGYRLWNKESPGVKIIISRDVVFNENEMLSMRTN 288
Query: 120 RIETKHEGEIR 88
TK + E R
Sbjct: 289 TAGTKEDSENR 299
>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
Length = 777
Score = 72.8 bits (177), Expect = 5e-11
Identities = 32/63 (50%), Positives = 43/63 (68%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C A+ HQ EGKL+PRS K +F+ Y GVKGY +W K GV+I++S D++FNE +M R
Sbjct: 334 CTAYVHQSEGKLEPRSIKCIFLGYLEGVKGYRLWNKESMGVKIIISHDVVFNENEMLSMR 393
Query: 117 IET 109
T
Sbjct: 394 TNT 396
>emb|CAN69199.1| hypothetical protein VITISV_025494 [Vitis vinifera]
Length = 540
Score = 72.0 bits (175), Expect = 8e-11
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C + HQ EGKL RS K +F+ YP GVKGY +W K GV+I++SRD++FNE +M R
Sbjct: 351 CTTYVHQSEGKLVTRSIKCIFLGYPEGVKGYKLWNKESSGVKIIISRDVVFNENEMLFMR 410
Query: 117 IET 109
T
Sbjct: 411 TNT 413
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 70.1 bits (170), Expect = 3e-10
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMH 127
C A+AHQ+EGKLDPR+KK +F+ YP GVKGY +W K + +SRD++F E + +
Sbjct: 119 CTAYAHQKEGKLDPRAKKCMFVGYPEGVKGYKLWCKYGNTSKSFISRDVVFRETEYY 175
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 67.0 bits (162), Expect = 2e-09
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C A+ H +GKL PR+ KGVF+ YP G KGY VWL E + V+SR+I+FNE ++ +
Sbjct: 660 CIAYVHLDQGKLKPRALKGVFLGYPQGTKGYKVWLLDEE--KCVISRNIVFNENQVY-KD 716
Query: 117 IETKHEGEIRLVDCVLAW-----LVKERLDCSCA*GLS---IDRESE 1
I E ++ + + + VKE +CS G++ ID+ES+
Sbjct: 717 IRESSEQSVKDISDLEGYNEFQVSVKEHGECSKTGGVTIEEIDQESD 763
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 65.5 bits (158), Expect = 7e-09
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
C AF H +GKL+PR+KKGV I YP GVKGY VW+ E + VVSR+IIF E
Sbjct: 670 CVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDER--KCVVSRNIIFQE 720
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 63.9 bits (154), Expect = 2e-08
Identities = 25/56 (44%), Positives = 39/56 (69%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDM 130
C A+ H + KL+PR+ K +F+ YP GVKGY +W++ + + ++SRD+ FNE DM
Sbjct: 622 CTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDM 677
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 63.9 bits (154), Expect = 2e-08
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
C AF H +GKL+PR+KKG+ + YP GVKGY +WL E + VVSR++IF E
Sbjct: 648 CIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEK--KCVVSRNVIFQE 698
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 63.5 bits (153), Expect = 3e-08
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
C + + +EGKLDPR+KKGVF+ YP+GVKG+ VW+ E R +SR+++F E
Sbjct: 464 CVVYVYSQEGKLDPRAKKGVFVGYPNGVKGFRVWMIEEE--RCSISRNVVFRE 514
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
C A+ H +GKL+PRSKKG+F YP GVKGY VW+ + + V+SR++IF E
Sbjct: 646 CLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIFRE 696
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C + H + KL+PR+ K +F+ YP GVKGY +W++ + + ++SRD+ FNE DM ++
Sbjct: 230 CTTYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKRKCIISRDVTFNEQDM-SKQ 288
Query: 117 IETKH-EGEIRL 85
TK+ EG +L
Sbjct: 289 TPTKYVEGSDQL 300
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 62.4 bits (150), Expect = 6e-08
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
C A+ H EGKL+PR+KKGVF+ Y GVKG+ +W E R+++SR+++F+E
Sbjct: 642 CTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVFDE 692
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 62.0 bits (149), Expect = 8e-08
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = -1
Query: 291 AFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
A+ HQ +GKL PR+ KGVF+ YP GVKGY VWL E + V+SR+++F+E
Sbjct: 648 AYVHQDQGKLKPRALKGVFLGYPQGVKGYKVWLLDEE--KCVISRNVVFDE 696
>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein
[Arabidopsis thaliana]
Length = 1104
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = -1
Query: 291 AFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
A+ HQ +GKL PR KGVF+ YP G KGY VWL E + V+SR+++FNE
Sbjct: 550 AYVHQEQGKLKPRVLKGVFLGYPQGTKGYKVWLIDEE--KCVISRNVVFNE 598
>emb|CAN77659.1| hypothetical protein VITISV_030914 [Vitis vinifera]
Length = 626
Score = 61.6 bits (148), Expect = 1e-07
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C+A+AH ++ KL PR+ K +F+ Y G+KGY +W + V+S D++FNE++M +
Sbjct: 255 CSAYAHIKQDKLKPRALKCIFLGYSDGIKGYKLWCIEPGNEKCVISXDVVFNEVNMPLSK 314
Query: 117 IETKHEGEIRLVDCVLAWLVKERLD 43
+ + +L+ + KE L+
Sbjct: 315 APKSDHTQXTSIRTILSIVAKEDLE 339
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 61.6 bits (148), Expect = 1e-07
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNE 139
C A+ H +GKL+ R+ KGVF+ YP GVKGY +W K + + +VSRD++F+E
Sbjct: 654 CPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG--KCIVSRDVVFHE 704
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 60.5 bits (145), Expect = 2e-07
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C A+AH +GKL+PR+ K +F+ Y +GVKGY +W + + ++SRD+ F+E M +R
Sbjct: 763 CPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQR 822
Query: 117 IE 112
E
Sbjct: 823 KE 824
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 60.5 bits (145), Expect = 2e-07
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -1
Query: 297 CAAFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMHCRR 118
C A+AH +GKL+PR+ K +F+ Y +GVKGY +W + + ++SRD+ F+E M +R
Sbjct: 976 CPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQR 1035
Query: 117 IE 112
E
Sbjct: 1036 KE 1037
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = -1
Query: 291 AFAHQREGKLDPRSKKGVFIDYPSGVKGYIVWLKGEPGVRIVVSRDIIFNELDMH 127
A+ H +GKL+PR+KKG+F+ YP GVK + VWL + + VVSRDI+F E M+
Sbjct: 659 AYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDR--KCVVSRDIVFQENQMY 711