BLASTX nr result
ID: Catharanthus23_contig00040192
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00040192
(315 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADO13868.1| RNA polymerase beta subunit [Phyllonoma ruscifolia] 119 4e-25
ref|YP_008081255.1| RNA polymerase beta' subunit (chloroplast) [... 119 5e-25
gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia am... 119 5e-25
gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri] 119 5e-25
ref|YP_008082571.1| RNA polymerase beta' subunit (chloroplast) [... 118 7e-25
gb|ABV65721.1| RNA polymerase beta'' subunit, partial (chloropla... 118 9e-25
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb... 118 9e-25
ref|YP_001936507.1| RNA polymerase beta'' chain [Fagopyrum escul... 117 1e-24
ref|YP_001109489.1| RNA polymerase beta'' subunit [Populus trich... 117 1e-24
ref|YP_665548.1| RNA polymerase beta'' subunit [Populus alba] gi... 117 1e-24
ref|YP_009000005.1| RNA polymerase beta' subunit (chloroplast) [... 117 2e-24
gb|AFB74304.1| DNA-directed RNA polymerase beta' chain, partial ... 117 2e-24
gb|AFB74302.1| DNA-directed RNA polymerase beta' chain, partial ... 117 2e-24
gb|AFB74300.1| DNA-directed RNA polymerase beta' chain, partial ... 117 2e-24
gb|AFB74298.1| DNA-directed RNA polymerase beta' chain, partial ... 117 2e-24
gb|AFB74296.1| DNA-directed RNA polymerase beta' chain, partial ... 117 2e-24
ref|YP_005089486.1| rpoC2 gene product (chloroplast) [Silene con... 117 2e-24
gb|ABD93766.1| RNA polymerase beta chain [Nepenthes sp. 'Kosobe'] 117 2e-24
gb|ABD93750.1| RNA polymerase beta chain [Phytolacca americana] 117 2e-24
ref|YP_008576293.1| RNA polymerase beta'' subunit (chloroplast) ... 117 2e-24
>gb|ADO13868.1| RNA polymerase beta subunit [Phyllonoma ruscifolia]
Length = 1182
Score = 119 bits (298), Expect = 4e-25
Identities = 57/64 (89%), Positives = 61/64 (95%)
Frame = +1
Query: 124 LCSGNAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQV 303
+ G++VVIR AKPYLATPGATVHGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQV
Sbjct: 1081 IIQGDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1140
Query: 304 LEVR 315
LEVR
Sbjct: 1141 LEVR 1144
>ref|YP_008081255.1| RNA polymerase beta' subunit (chloroplast) [Catharanthus roseus]
gi|474452066|gb|AGI51134.1| RNA polymerase beta' subunit
(chloroplast) [Catharanthus roseus]
Length = 1376
Score = 119 bits (297), Expect = 5e-25
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIRLAKPYLATPGATVHGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1093 DSVVIRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1152
>gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia americana]
Length = 1391
Score = 119 bits (297), Expect = 5e-25
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
N+VVIRLAKPYLATPGATVHGHYGE +YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1104 NSVVIRLAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1163
>gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
Length = 829
Score = 119 bits (297), Expect = 5e-25
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIRLAKPYLATPGATVHGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 613 DSVVIRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 672
>ref|YP_008082571.1| RNA polymerase beta' subunit (chloroplast) [Utricularia gibba]
gi|498921844|gb|AGL61065.1| RNA polymerase beta' subunit
(chloroplast) [Utricularia gibba]
Length = 1363
Score = 118 bits (296), Expect = 7e-25
Identities = 56/60 (93%), Positives = 60/60 (100%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIRLAKPYLATPGATVHGHYGEI+YEGDTL+TFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1097 DSVVIRLAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQGLPKVEQVLEVR 1156
>gb|ABV65721.1| RNA polymerase beta'' subunit, partial (chloroplast) [Clidemia
dentata]
Length = 1275
Score = 118 bits (295), Expect = 9e-25
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIRLAKPYLATPGATVHGHYGEI YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1063 DSVVIRLAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1122
>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis corallina]
Length = 1389
Score = 118 bits (295), Expect = 9e-25
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +1
Query: 142 VVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
VVIRLAKPYLATPGATVHGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1098 VVIRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1155
>ref|YP_001936507.1| RNA polymerase beta'' chain [Fagopyrum esculentum subsp. ancestrale]
gi|212288319|sp|B2XWN9.1|RPOC2_FAGEA RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|166065347|gb|ABY79722.1| RNA polymerase beta'' chain
[Fagopyrum esculentum subsp. ancestrale]
Length = 1365
Score = 117 bits (294), Expect = 1e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1085 DSVVIRAAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1144
>ref|YP_001109489.1| RNA polymerase beta'' subunit [Populus trichocarpa]
gi|212288340|sp|A4GYP8.1|RPOC2_POPTR RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|133712049|gb|ABO36692.1| RNA polymerase beta'' chain
[Populus trichocarpa]
Length = 1390
Score = 117 bits (294), Expect = 1e-24
Identities = 55/60 (91%), Positives = 60/60 (100%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++V++RLAKPYLATPGATVHGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1099 DSVILRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1158
>ref|YP_665548.1| RNA polymerase beta'' subunit [Populus alba]
gi|122224632|sp|Q14FG7.1|RPOC2_POPAL RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|109945507|dbj|BAE97195.1| RNA polymerase beta II
subunit [Populus alba]
Length = 1390
Score = 117 bits (294), Expect = 1e-24
Identities = 55/60 (91%), Positives = 60/60 (100%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++V++RLAKPYLATPGATVHGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1099 DSVILRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1158
>ref|YP_009000005.1| RNA polymerase beta' subunit (chloroplast) [Silene conoidea]
gi|555944092|gb|AGZ17995.1| RNA polymerase beta' subunit
(chloroplast) [Silene conoidea]
Length = 1363
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1087 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1146
>gb|AFB74304.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Portulaca oleracea]
Length = 839
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 623 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 682
>gb|AFB74302.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Portulacaria afra]
Length = 841
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 625 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 684
>gb|AFB74300.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Mollugo verticillata]
Length = 844
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 628 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 687
>gb|AFB74298.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Didierea madagascariensis]
Length = 839
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 623 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 682
>gb|AFB74296.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Anredera baselloides]
Length = 839
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 623 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 682
>ref|YP_005089486.1| rpoC2 gene product (chloroplast) [Silene conica]
gi|329755429|gb|AEC03993.1| RNA polymerase beta' subunit
(chloroplast) [Silene conica]
Length = 1366
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1091 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1150
>gb|ABD93766.1| RNA polymerase beta chain [Nepenthes sp. 'Kosobe']
Length = 856
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 640 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 699
>gb|ABD93750.1| RNA polymerase beta chain [Phytolacca americana]
Length = 862
Score = 117 bits (293), Expect = 2e-24
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 646 DSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 705
>ref|YP_008576293.1| RNA polymerase beta'' subunit (chloroplast) [Eucalyptus melliodora]
gi|442567433|gb|AGC57617.1| RNA polymerase beta'' subunit
(chloroplast) [Eucalyptus melliodora]
Length = 1392
Score = 117 bits (292), Expect = 2e-24
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +1
Query: 136 NAVVIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 315
++VVIR AKPYLATPGATVHGHYGEI+YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
Sbjct: 1101 DSVVIRYAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1160