BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00039460
         (262 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY22291.1| Non-LTR retrolelement reverse transcriptase-like ...    92   6e-17
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...    91   2e-16
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    90   3e-16
ref|NP_193785.1| RNA binding / RNA-directed DNA polymerase [Arab...    89   8e-16
pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NIN...    88   1e-15
gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thali...    88   1e-15
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624...    88   1e-15
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    88   1e-15
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    87   2e-15
ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314...    86   5e-15
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    85   1e-14
gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japo...    84   2e-14
gb|EEC68711.1| hypothetical protein OsI_37193 [Oryza sativa Indi...    84   2e-14
ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297...    83   3e-14
gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus pe...    83   4e-14
gb|EMJ14477.1| hypothetical protein PRUPE_ppb025438mg, partial [...    83   4e-14
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    83   4e-14
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A...    82   6e-14
gb|EMJ25902.1| hypothetical protein PRUPE_ppa025398mg, partial [...    81   1e-13
gb|EMJ27906.1| hypothetical protein PRUPE_ppa020120mg [Prunus pe...    81   2e-13

>gb|EOY22291.1| Non-LTR retrolelement reverse transcriptase-like protein [Theobroma
           cacao]
          Length = 291

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 43/79 (54%), Positives = 59/79 (74%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K+L N ++P++ KLI   Q SFILGRQASDN+I+ QEA+H+MR  K K G    K+DLEK
Sbjct: 10  KILVNRLRPILTKLIRNTQSSFILGRQASDNIIVVQEAIHTMRIMKRKKGALVIKIDLEK 69

Query: 183 AYDCISWGFLEQVLVYVGI 239
           AYD + W FL++VL+ +G+
Sbjct: 70  AYDRVKWYFLQEVLIEIGL 88


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 970

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 43/79 (54%), Positives = 58/79 (73%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K++ N +K ++ KLI P Q +FI GR + DN++L QEA+HSMRRKKG+ G+   KLDLEK
Sbjct: 233 KMIVNRLKKVILKLIGPAQANFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEK 292

Query: 183 AYDCISWGFLEQVLVYVGI 239
           AYD I W FL++ LV  G+
Sbjct: 293 AYDRIRWNFLQETLVATGL 311


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 41/79 (51%), Positives = 56/79 (70%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           KV+ N +KP++  LISP QCSF+  RQ +DNVI+ QE  HSMR K+GK G+ A K+D EK
Sbjct: 526 KVIINRLKPILPSLISPTQCSFVPNRQITDNVIIVQEMFHSMRNKQGKKGFMAVKIDFEK 585

Query: 183 AYDCISWGFLEQVLVYVGI 239
           AYD + W F+ + L+ + I
Sbjct: 586 AYDRLRWTFIRESLMELRI 604


>ref|NP_193785.1| RNA binding / RNA-directed DNA polymerase [Arabidopsis thaliana]
           gi|5262175|emb|CAB45818.1| putative protein [Arabidopsis
           thaliana] gi|7268848|emb|CAB79052.1| putative protein
           [Arabidopsis thaliana] gi|332658938|gb|AEE84338.1| RNA
           binding / RNA-directed DNA polymerase [Arabidopsis
           thaliana]
          Length = 376

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 42/72 (58%), Positives = 51/72 (70%)
 Frame = +3

Query: 21  IKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEKAYDCIS 200
           +KPLM  LI P Q SFI GR ++DN++  QEA+HSMRRKKG  G+   KLDLEKAYD I 
Sbjct: 5   LKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIR 64

Query: 201 WGFLEQVLVYVG 236
           W +LE  L+  G
Sbjct: 65  WDYLEDTLISAG 76


>pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NING13) -
           Arabidopsis thaliana retrotransposon Ta28 (fragment)
          Length = 183

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 43/78 (55%), Positives = 54/78 (69%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K +   +K +M KLI P Q SFI GR ++DN+++ QEA+H MR+KKG MG+   KLDLEK
Sbjct: 69  KTMVGRMKGVMQKLIGPAQSSFIPGRLSTDNIVVVQEAVHPMRKKKGVMGWMLLKLDLEK 128

Query: 183 AYDCISWGFLEQVLVYVG 236
           AYD I W FLE  LV  G
Sbjct: 129 AYDRIRWDFLEDTLVAAG 146


>gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 198

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 43/78 (55%), Positives = 54/78 (69%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K +   +K +M KLI P Q SFI GR ++DN+++ QEA+H MR+KKG MG+   KLDLEK
Sbjct: 75  KTMVGRMKGVMQKLIGPAQSSFIPGRLSTDNIVVVQEAVHPMRKKKGVMGWMLLKLDLEK 134

Query: 183 AYDCISWGFLEQVLVYVG 236
           AYD I W FLE  LV  G
Sbjct: 135 AYDRIRWDFLEDTLVAAG 152


>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
          Length = 1635

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 40/86 (46%), Positives = 62/86 (72%)
 Frame = +3

Query: 3    KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
            K++AN ++ L+ +LI P Q SF+ GR  ++N+I+AQE +HSMRRKKG+ G+ A K+DL K
Sbjct: 1016 KIIANRLQELLPELIGPHQTSFVPGRHITENIIVAQEIIHSMRRKKGRKGFMAIKVDLGK 1075

Query: 183  AYDCISWGFLEQVLVYVGID*SIIRL 260
            AYD +SW F+++ L  + +   +I L
Sbjct: 1076 AYDRLSWTFIQETLQELNLPTMLINL 1101


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 41/79 (51%), Positives = 56/79 (70%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K++   +K ++ KLI P Q SFI GR + DN++L QEA+HSMRRKKG+ G+   KLDLEK
Sbjct: 383 KMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEK 442

Query: 183 AYDCISWGFLEQVLVYVGI 239
           AYD + W FL++ L   G+
Sbjct: 443 AYDRVRWDFLQETLEAAGL 461


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 43/74 (58%), Positives = 53/74 (71%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K L   +K ++ KLI P Q SFI GR A+DN+++ QEA+HSMRRKKG+ G+   KLDLEK
Sbjct: 80  KTLVMRLKRVISKLIRPAQASFISGRLAADNIVIMQEAVHSMRRKKGRKGWMLLKLDLEK 139

Query: 183 AYDCISWGFLEQVL 224
           AYD I W FLE  L
Sbjct: 140 AYDRIRWEFLEDTL 153


>ref|XP_004295858.1| PREDICTED: uncharacterized protein LOC101314838 [Fragaria vesca
            subsp. vesca]
          Length = 1524

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3    KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSM-RRKKGKMGYFAGKLDLE 179
            KVLAN IKPL+D +IS  Q +F+ GR  SDN +LA E  H + RRK+GK+GY A K+D+ 
Sbjct: 1009 KVLANRIKPLLDDIISQHQGTFVPGRLISDNSLLAFEISHCLKRRKRGKVGYCALKIDMS 1068

Query: 180  KAYDCISWGFLEQVLVYVGID*SIIR 257
            KAYD + W FLE VL  +G   +++R
Sbjct: 1069 KAYDRVEWSFLETVLSKLGFGGNLLR 1094


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 41/79 (51%), Positives = 55/79 (69%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K++   +K ++ KLI P Q SFI GR + DN+++ QEA+HSMRRKKG+ G+   KLDLEK
Sbjct: 335 KMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEK 394

Query: 183 AYDCISWGFLEQVLVYVGI 239
           AYD I W FL + L   G+
Sbjct: 395 AYDRIRWDFLAETLEAAGL 413


>gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japonica Group]
          Length = 662

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 41/87 (47%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMR-RKKGKMGYFAGKLDLE 179
           KVLAN +K ++ ++ISP Q +F+ GR  SDN+++A E  H MR +K+GKMGY A KLD+ 
Sbjct: 213 KVLANRLKTILPEVISPTQSAFVPGRLISDNILVAYEMTHYMRSKKRGKMGYAAIKLDMS 272

Query: 180 KAYDCISWGFLEQVLVYVGID*SIIRL 260
           KAYD + W FL  +++++G +   I L
Sbjct: 273 KAYDRVEWSFLRDMMLWLGFNAEWINL 299


>gb|EEC68711.1| hypothetical protein OsI_37193 [Oryza sativa Indica Group]
          Length = 1546

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 38/86 (44%), Positives = 61/86 (70%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           K+L+  +K ++ ++IS  Q +F+ GR  +DN++LA E +H+M+RKKG+ G  A KLD+ K
Sbjct: 292 KMLSFRLKQILPEIISDHQSAFVPGRLITDNILLAYECIHTMKRKKGRKGLCAVKLDMHK 351

Query: 183 AYDCISWGFLEQVLVYVGID*SIIRL 260
           AYD + WGFLE+++  +G D   I+L
Sbjct: 352 AYDRVEWGFLEKIMTKLGFDQRWIKL 377


>ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297422 [Fragaria vesca
           subsp. vesca]
          Length = 1096

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 41/79 (51%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSM-RRKKGKMGYFAGKLDLE 179
           K+LAN +KPL+D +ISP Q +F+ GR  SDN +LA E  H + +R++GK+GY A KLD+ 
Sbjct: 284 KLLANSLKPLLDSIISPFQSAFVPGRLISDNSLLAFEISHCLKKRRRGKVGYGALKLDMN 343

Query: 180 KAYDCISWGFLEQVLVYVG 236
           KAYD + W FLE +L+ +G
Sbjct: 344 KAYDRVEWRFLEVMLIKLG 362


>gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus persica]
          Length = 992

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 41/79 (51%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSM-RRKKGKMGYFAGKLDLE 179
           KVLAN +K ++DK+ISP Q + I GR  SDN ILA E +H + RR++GK G+ A K+D+ 
Sbjct: 164 KVLANRLKLILDKIISPSQSALISGRLISDNTILAAEIIHYLRRRRRGKKGFMALKMDMS 223

Query: 180 KAYDCISWGFLEQVLVYVG 236
           KAYD I W FLE ++  +G
Sbjct: 224 KAYDRIEWSFLEAIMRKLG 242


>gb|EMJ14477.1| hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
          Length = 614

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 40/87 (45%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAG-KLDLE 179
           K+LAN +KP++ + + PQQ +FI GRQ  DN+++A EA H+++ KK    Y  G KLD+ 
Sbjct: 329 KILANRLKPILAEFVFPQQSAFIPGRQIQDNILIALEAFHALKLKKKTKVYEMGLKLDMN 388

Query: 180 KAYDCISWGFLEQVLVYVGID*SIIRL 260
           KAYD I W F+++VL+ +G D + +RL
Sbjct: 389 KAYDRIEWDFVKEVLLKLGFDRTWVRL 415


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 41/86 (47%), Positives = 56/86 (65%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRKKGKMGYFAGKLDLEK 182
           KVL + ++P ++ LI P Q SF+ GR  +DN I+ QE LH M+R K K GY A KLDLEK
Sbjct: 522 KVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEK 581

Query: 183 AYDCISWGFLEQVLVYVGID*SIIRL 260
           A+D ++W FL   L+  G    I++L
Sbjct: 582 AFDNVNWDFLNSCLLDFGFPDIIVKL 607


>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 1152

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 44/86 (51%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMR-RKKGKMGYFAGKLDLE 179
           KVLAN IKPL+D +IS QQ +F+ GR  SDN +LA E  H ++ R+ GK+G  A KLD+ 
Sbjct: 277 KVLANRIKPLLDDIISQQQSAFVPGRLISDNSLLAFEVSHCLKCRRSGKVGLCALKLDMS 336

Query: 180 KAYDCISWGFLEQVLVYVGID*SIIR 257
           KAYD + W FLE+VL  +G   + +R
Sbjct: 337 KAYDRVEWCFLEKVLGKLGFGDTFVR 362


>gb|EMJ25902.1| hypothetical protein PRUPE_ppa025398mg, partial [Prunus persica]
          Length = 320

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSMRRK-KGKMGYFAGKLDLE 179
           KVLAN +K ++DK+ISP Q +FI GR  SDN ILA E +H +RR+ + K G+ A K+D+ 
Sbjct: 243 KVLANKLKLILDKIISPSQSAFIFGRLISDNTILATEIIHYLRRRPRSKKGFVALKMDMI 302

Query: 180 KAYDCISWGFLEQVL 224
           KAYD I W FLE ++
Sbjct: 303 KAYDRIEWSFLEAIM 317


>gb|EMJ27906.1| hypothetical protein PRUPE_ppa020120mg [Prunus persica]
          Length = 1011

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3   KVLANIIKPLMDKLISPQQCSFILGRQASDNVILAQEALHSM-RRKKGKMGYFAGKLDLE 179
           KVLAN +K ++ K+ISP Q +FI GR  SDN ILA E +H + RR++GK G+   K+D+ 
Sbjct: 422 KVLANRLKLILHKIISPSQSAFISGRLISDNTILAAEIIHYLRRRRRGKKGFMVLKMDMS 481

Query: 180 KAYDCISWGFLEQVLVYVG 236
           KAYD I W FLE ++  +G
Sbjct: 482 KAYDRIEWSFLEAIMRKLG 500