BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00039441
         (247 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004231300.1| PREDICTED: putative pentatricopeptide repeat...   107   2e-21
ref|XP_006344789.1| PREDICTED: putative pentatricopeptide repeat...    97   3e-18
ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat...    89   5e-16
ref|XP_004304909.1| PREDICTED: putative pentatricopeptide repeat...    83   3e-14
ref|XP_002318941.2| pentatricopeptide repeat-containing family p...    83   4e-14
ref|XP_006472235.1| PREDICTED: putative pentatricopeptide repeat...    79   5e-13
ref|XP_006433564.1| hypothetical protein CICLE_v10000630mg [Citr...    79   5e-13
gb|EOY11702.1| Tetratricopeptide repeat (TPR)-like superfamily p...    75   1e-11
ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat...    74   2e-11
ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat...    74   2e-11
gb|EXB53013.1| hypothetical protein L484_018897 [Morus notabilis]      72   1e-10
ref|XP_003591223.1| Pentatricopeptide repeat-containing protein ...    70   3e-10
ref|NP_176050.1| pentatricopeptide repeat protein PGN [Arabidops...    69   6e-10
ref|XP_002891984.1| pentatricopeptide repeat-containing protein ...    68   1e-09
ref|XP_006301338.1| hypothetical protein CARUB_v10021748mg, part...    68   1e-09
ref|XP_006392413.1| hypothetical protein EUTSA_v10024029mg [Eutr...    67   2e-09
ref|XP_004495637.1| PREDICTED: putative pentatricopeptide repeat...    65   1e-08
emb|CBI39620.3| unnamed protein product [Vitis vinifera]               63   4e-08
gb|EPS61875.1| hypothetical protein M569_12918, partial [Genlise...    59   7e-07
gb|EMJ09704.1| hypothetical protein PRUPE_ppa026465mg, partial [...    58   1e-06

>ref|XP_004231300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Solanum lycopersicum]
          Length = 608

 Score =  107 bits (266), Expect = 2e-21
 Identities = 50/77 (64%), Positives = 60/77 (77%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVD 54
           M++RKLVS T+C QIPQ I NSL     +P H + PFL KPPS+LAT ++KSYFERG + 
Sbjct: 1   MNARKLVSQTHCTQIPQTIKNSLLCAAIDPPHSNPPFLPKPPSILATGLLKSYFERGLIR 60

Query: 53  EARMLFDEMPDRDVVAW 3
           EAR LFDEMP+RDVVAW
Sbjct: 61  EARTLFDEMPERDVVAW 77


>ref|XP_006344789.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Solanum tuberosum]
          Length = 605

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 48/77 (62%), Positives = 58/77 (75%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVD 54
           M++RKLVS T   QIPQ I NSL     +P H + PF+ KPPS+LAT ++KSYFERG + 
Sbjct: 1   MNARKLVSQT---QIPQTIKNSLLCAAIDPPHSNPPFVPKPPSILATGLLKSYFERGLIR 57

Query: 53  EARMLFDEMPDRDVVAW 3
           EAR LFDEMP+RDVVAW
Sbjct: 58  EARTLFDEMPERDVVAW 74


>ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 44/77 (57%), Positives = 56/77 (72%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVD 54
           MS+RKL+STT+   IP  + NS+   Q+  T  + PF+ K PSVLAT +IKSYF +G + 
Sbjct: 1   MSTRKLLSTTHFHPIPLIVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKGLIG 60

Query: 53  EARMLFDEMPDRDVVAW 3
           EAR LFDEMP+RDVVAW
Sbjct: 61  EARTLFDEMPERDVVAW 77


>ref|XP_004304909.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Fragaria vesca subsp. vesca]
          Length = 608

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQP-FLAKPPSVLATNIIKSYFERGQV 57
           M+SRKL+  T+   IP  I NSL+ +Q  PT  S P F +K P++LAT++IKSYF++G +
Sbjct: 1   MTSRKLLPRTHFNPIPTIIRNSLHCSQEQPTTQSNPPFFSKGPNLLATDLIKSYFQKGSL 60

Query: 56  DEARMLFDEMPDRDVVAW 3
            EAR +FDEM +RDVV W
Sbjct: 61  KEARKVFDEMSERDVVTW 78


>ref|XP_002318941.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550324647|gb|EEE94864.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 610

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLS-QPFLAKPPSVLATNIIKSYFERGQV 57
           MS+++L+S       P  + N L W Q+ PT  S  PF AK  S+LAT+++KSYFERG  
Sbjct: 1   MSTKRLLSANNFHPFPPMMKNYLQWAQNTPTQKSGTPFNAKGTSILATDLLKSYFERGLT 60

Query: 56  DEARMLFDEMPDRDVVAW 3
            +AR LFDEMP+RDVVAW
Sbjct: 61  SQARNLFDEMPERDVVAW 78


>ref|XP_006472235.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Citrus sinensis]
          Length = 609

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
 Frame = -3

Query: 233 MSSRKLVS---TTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERG 63
           M +++L+S   T +C +IP  I  SL   + +      P + K PS+LATN+IKSYF+ G
Sbjct: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60

Query: 62  QVDEARMLFDEMPDRDVVAW 3
            ++EAR LFDEMP+RDVV+W
Sbjct: 61  LIEEARTLFDEMPERDVVSW 80


>ref|XP_006433564.1| hypothetical protein CICLE_v10000630mg [Citrus clementina]
           gi|557535686|gb|ESR46804.1| hypothetical protein
           CICLE_v10000630mg [Citrus clementina]
          Length = 609

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
 Frame = -3

Query: 233 MSSRKLVS---TTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERG 63
           M +++L+S   T +C +IP  I  SL   + +      P + K PS+LATN+IKSYF+ G
Sbjct: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60

Query: 62  QVDEARMLFDEMPDRDVVAW 3
            ++EAR LFDEMP+RDVV+W
Sbjct: 61  LIEEARTLFDEMPERDVVSW 80


>gb|EOY11702.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao]
          Length = 605

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 35/62 (56%), Positives = 46/62 (74%), Gaps = 5/62 (8%)
 Frame = -3

Query: 173 NSLYWTQSNPTHLSQPFL-----AKPPSVLATNIIKSYFERGQVDEARMLFDEMPDRDVV 9
           NSL W QS+ T    P+      AK P++LATN+IKS+FE+G +++AR+LFDEMPDRDVV
Sbjct: 15  NSLQWVQSHSTWTKIPYTNLSKGAKGPAILATNVIKSFFEKGLINDARVLFDEMPDRDVV 74

Query: 8   AW 3
            W
Sbjct: 75  MW 76


>ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 36/77 (46%), Positives = 49/77 (63%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVD 54
           MS  KL S+ +   IP  + NSL W  ++    + PF  + PSV ATN+IKSYF++G   
Sbjct: 1   MSVDKLASSPHFHPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTR 60

Query: 53  EARMLFDEMPDRDVVAW 3
           EA  LF+E+P+RDVV W
Sbjct: 61  EACNLFNEIPERDVVTW 77


>ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 36/77 (46%), Positives = 49/77 (63%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVD 54
           MS  KL S+ +   IP  + NSL W  ++    + PF  + PSV ATN+IKSYF++G   
Sbjct: 1   MSVDKLASSPHFHPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTR 60

Query: 53  EARMLFDEMPDRDVVAW 3
           EA  LF+E+P+RDVV W
Sbjct: 61  EACNLFNEIPERDVVTW 77


>gb|EXB53013.1| hypothetical protein L484_018897 [Morus notabilis]
          Length = 582

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 36/52 (69%), Positives = 40/52 (76%)
 Frame = -3

Query: 158 TQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVDEARMLFDEMPDRDVVAW 3
           TQSNP     PFL K PSVLATN+IKSY E+G V EAR +FDEMP +DVVAW
Sbjct: 11  TQSNP-----PFLPKAPSVLATNLIKSYLEKGLVKEARSVFDEMPHKDVVAW 57


>ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355480271|gb|AES61474.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 606

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 37/75 (49%), Positives = 50/75 (66%)
 Frame = -3

Query: 227 SRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVDEA 48
           SRKL+S+T  R IP ++ NSL   Q++      PF  K  + L T++IKSYF++G  +EA
Sbjct: 6   SRKLLSSTNFRPIPFSVQNSLRCIQNDT-----PFNPKDLTGLTTDLIKSYFDKGSFEEA 60

Query: 47  RMLFDEMPDRDVVAW 3
             LFDEMP RDV+AW
Sbjct: 61  HTLFDEMPHRDVIAW 75


>ref|NP_176050.1| pentatricopeptide repeat protein PGN [Arabidopsis thaliana]
           gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g56570 gi|9954755|gb|AAG09106.1|AC009323_17
           Hypothetical protein [Arabidopsis thaliana]
           gi|332195289|gb|AEE33410.1| pentatricopeptide repeat
           protein PGN [Arabidopsis thaliana]
          Length = 611

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLY--WTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQ 60
           MS  KL  +   + IP  + +SL     +S+      P+  K   +LATN+I SYFE+G 
Sbjct: 1   MSITKLARSNAFKPIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGL 60

Query: 59  VDEARMLFDEMPDRDVVAW 3
           V+EAR LFDEMPDRDVVAW
Sbjct: 61  VEEARSLFDEMPDRDVVAW 79


>ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297337826|gb|EFH68243.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 611

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLY--WTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQ 60
           MS  K   +   + IP  + +SL     +S+    S P+  K   +LATN+I SYFE+G 
Sbjct: 1   MSITKFARSNAFKPIPNFVRSSLRNACVESSQNTESPPYKPKKHHILATNLIVSYFEKGL 60

Query: 59  VDEARMLFDEMPDRDVVAW 3
           V+EAR LFDEMP+RDVVAW
Sbjct: 61  VEEARSLFDEMPERDVVAW 79


>ref|XP_006301338.1| hypothetical protein CARUB_v10021748mg, partial [Capsella rubella]
           gi|482570048|gb|EOA34236.1| hypothetical protein
           CARUB_v10021748mg, partial [Capsella rubella]
          Length = 614

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
 Frame = -3

Query: 230 SSRKLVSTTYCRQIPQAIMNSLY--WTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQV 57
           S  KL  +   + IP  + +SL     +S+    S P+  K   +LATN+I SYFE+G V
Sbjct: 5   SITKLARSNAFKPIPNFVRSSLRNACVESSQNTESPPYRPKKHHILATNLIVSYFEKGLV 64

Query: 56  DEARMLFDEMPDRDVVAW 3
           +EAR LFDEMP+RDVVAW
Sbjct: 65  EEARSLFDEMPERDVVAW 82


>ref|XP_006392413.1| hypothetical protein EUTSA_v10024029mg [Eutrema salsugineum]
           gi|557088919|gb|ESQ29699.1| hypothetical protein
           EUTSA_v10024029mg [Eutrema salsugineum]
          Length = 610

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLY--WTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQ 60
           MS  KLV +   + IP  + +SL     +SN  +   P+  K   +LATN+I SYF++G 
Sbjct: 1   MSITKLVRSNGFKPIPNFVRSSLRNACVESNQ-NTDAPYRPKKHHILATNLILSYFKKGL 59

Query: 59  VDEARMLFDEMPDRDVVAW 3
           V+EAR LFDEMP+RDVVAW
Sbjct: 60  VEEARSLFDEMPERDVVAW 78


>ref|XP_004495637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cicer arietinum]
          Length = 607

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 33/74 (44%), Positives = 47/74 (63%)
 Frame = -3

Query: 224 RKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVDEAR 45
           RKL+S T    +P ++ NSL   +     L+ PF  K  + + T++IKSYF+ G ++EA 
Sbjct: 6   RKLLSPTDFLPLPLSVQNSLRCIE-----LNSPFSPKGITGITTDLIKSYFDEGSIEEAH 60

Query: 44  MLFDEMPDRDVVAW 3
            LFDEMP RDV+AW
Sbjct: 61  SLFDEMPHRDVIAW 74


>emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 32/65 (49%), Positives = 44/65 (67%)
 Frame = -3

Query: 233 MSSRKLVSTTYCRQIPQAIMNSLYWTQSNPTHLSQPFLAKPPSVLATNIIKSYFERGQVD 54
           MS+RKL+STT+   IP  + NS+   Q+  T  + PF+ K PSVLAT +IKSYF +G + 
Sbjct: 1   MSTRKLLSTTHFHPIPLIVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKGLIG 60

Query: 53  EARML 39
           EA M+
Sbjct: 61  EALMI 65


>gb|EPS61875.1| hypothetical protein M569_12918, partial [Genlisea aurea]
          Length = 560

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 31/43 (72%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = -3

Query: 128 PFLAKP-PSVLATNIIKSYFERGQVDEARMLFDEMPDRDVVAW 3
           PFL K  PS LATNII SYFE G V EAR LFDEM  RDV+AW
Sbjct: 1   PFLPKTTPSALATNIIVSYFEAGLVGEARNLFDEMSGRDVIAW 43


>gb|EMJ09704.1| hypothetical protein PRUPE_ppa026465mg, partial [Prunus persica]
          Length = 588

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = -3

Query: 104 VLATNIIKSYFERGQVDEARMLFDEMPDRDVVAW 3
           V+ATN+IKS FERG + EAR LFDEMP+RDVVAW
Sbjct: 29  VIATNLIKSCFERGLIKEARKLFDEMPERDVVAW 62