BLASTX nr result
ID: Catharanthus23_contig00038338
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00038338
(546 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002509552.1| Sister chromatid cohesion 1 protein, putativ... 71 1e-10
ref|XP_006373253.1| Sister chromatid cohesion 1 protein 2 [Popul... 59 6e-07
ref|XP_002331697.1| predicted protein [Populus trichocarpa] 59 6e-07
gb|EXC31357.1| Sister chromatid cohesion 1 protein 2 [Morus nota... 58 1e-06
ref|XP_004305922.1| PREDICTED: sister chromatid cohesion 1 prote... 57 2e-06
emb|CBI40063.3| unnamed protein product [Vitis vinifera] 57 3e-06
ref|XP_002270491.1| PREDICTED: sister chromatid cohesion 1 prote... 57 3e-06
ref|XP_006338678.1| PREDICTED: sister chromatid cohesion 1 prote... 56 5e-06
>ref|XP_002509552.1| Sister chromatid cohesion 1 protein, putative [Ricinus communis]
gi|223549451|gb|EEF50939.1| Sister chromatid cohesion 1
protein, putative [Ricinus communis]
Length = 781
Score = 71.2 bits (173), Expect = 1e-10
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 173 KKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGRRQTALDAPRACKMPTLPKSLFERLI 352
+KRKC+FD+ IV N V+K C++D S+ ++RK TAL A RA ++ LP+ E LI
Sbjct: 446 RKRKCVFDDTIVFPNNVIKQCIEDSSDLVSKRKKAPHTALTAWRASRVSRLPRCFLESLI 505
Query: 353 PCVV-DFGSLVSRTKIAGVSVETAATTTDSFIAQSPVTQMSAKPAE 487
PC D SL+S K+ +F ++ P + S + E
Sbjct: 506 PCTASDLRSLLSGKKLKISESLDTVRVPQTFTSECPTARRSVETVE 551
>ref|XP_006373253.1| Sister chromatid cohesion 1 protein 2 [Populus trichocarpa]
gi|550319959|gb|ERP51050.1| Sister chromatid cohesion 1
protein 2 [Populus trichocarpa]
Length = 770
Score = 59.3 bits (142), Expect = 6e-07
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 173 KKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGRRQTALDAPRACKMPTLPKSLFERLI 352
+KRKC FD+ +V N V+K C+++ + ++R+ TA +AC+ L K E LI
Sbjct: 389 RKRKCFFDDVVVFPNNVIKECIENTGDLVSKRRKLPHTAFAVWKACRFSNLDKCFLEPLI 448
Query: 353 PCV-VDFGSLVSRTKIAGVSVETAATTTDSFIAQSPVTQMSAKPAE 487
PC ++ GSL RTK + ET + S + P ++ A ++
Sbjct: 449 PCASLELGSLF-RTKKLQIP-ETVKSVGGSVEIEEPSKKLDASESQ 492
>ref|XP_002331697.1| predicted protein [Populus trichocarpa]
Length = 770
Score = 59.3 bits (142), Expect = 6e-07
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 173 KKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGRRQTALDAPRACKMPTLPKSLFERLI 352
+KRKC FD+ +V N V+K C+++ + ++R+ TA +AC+ L K E LI
Sbjct: 389 RKRKCFFDDVVVFPNNVIKECIENTGDLVSKRRKLPHTAFAVWKACRFSNLDKCFLEPLI 448
Query: 353 PCV-VDFGSLVSRTKIAGVSVETAATTTDSFIAQSPVTQMSAKPAE 487
PC ++ GSL RTK + ET + S + P ++ A ++
Sbjct: 449 PCASLELGSLF-RTKKLQIP-ETVKSVGGSVEIEEPSKKLDASESQ 492
>gb|EXC31357.1| Sister chromatid cohesion 1 protein 2 [Morus notabilis]
Length = 900
Score = 58.2 bits (139), Expect = 1e-06
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = +2
Query: 167 LEKKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGRRQTALDAPRACKMPTLPKSLFER 346
+ +KRKC+FD+ IVL N+VLK + D S+ ++R+ QTAL RA + +L FE
Sbjct: 541 ISRKRKCIFDDVIVLPNKVLKTSIYDASDLVSKRRKVAQTALAVWRASR--SLHNEFFEP 598
Query: 347 LIPCV-VDFGSLVSRTKIAGV-SVETAATTTDSFIAQSPVTQMSAKPAEICENPV 505
LIPC + SL S K+ + SV+T + I + P +S + E PV
Sbjct: 599 LIPCASSELRSLFSVKKLKIITSVKTVEPPIELNIPERPPVAISEQICIAPETPV 653
>ref|XP_004305922.1| PREDICTED: sister chromatid cohesion 1 protein 2-like [Fragaria
vesca subsp. vesca]
Length = 560
Score = 57.4 bits (137), Expect = 2e-06
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Frame = +2
Query: 98 MREFSPQTGIRLALK*PLGRVLWLEKKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGR 277
+R P IR A + + ++KR+C DE VL N V+K ++D S+ ++R+
Sbjct: 420 LRRVIPTPAIRKAAR------ISRKRKRRCRIDEITVLPNAVIKQSINDASDLVSKRRKV 473
Query: 278 RQTALDAPRACKMPTLPKSLFERLIPCV-VDFGSLVSRTKIAGVSVETAATTTDSFIAQS 454
+TALDA + C++ L ++ E IP V + SL R+ I D F
Sbjct: 474 PETALDAWKTCQIRNLSQTFLEPFIPSVSEEIRSLFHRSVIDSAETAEPPVKPDVF---E 530
Query: 455 PVTQMSAKPAEICENPVVVKPLDVQISVE 541
P + + EI P V++ ++++ S E
Sbjct: 531 PPSAGRPEQVEITPEPPVLEHMEIEPSKE 559
>emb|CBI40063.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 57.0 bits (136), Expect = 3e-06
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +2
Query: 167 LEKKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGRRQTALDAPRACKMPTLPKSLFER 346
+ +KRKCLFDEKIVLS+ LK + S+ +R+ TA DA + ++ L + E
Sbjct: 357 IPRKRKCLFDEKIVLSSEFLKKSIQSSSDLIRKRRKVPHTAYDAWKVYQIANLSQGFLEA 416
Query: 347 LIPCV-VDFGSLVSRTKIAGVSVETAATTTDSFIAQ-SP-VTQMSAKPAEICENPVV 508
LIPC+ ++ SL K+ + D + SP V Q+ + A E P +
Sbjct: 417 LIPCISLELRSLFHAKKLMTPELVVNVEAPDGLVVPGSPTVNQLLKETAIAPETPAI 473
>ref|XP_002270491.1| PREDICTED: sister chromatid cohesion 1 protein 2-like [Vitis
vinifera]
Length = 756
Score = 57.0 bits (136), Expect = 3e-06
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +2
Query: 167 LEKKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGRRQTALDAPRACKMPTLPKSLFER 346
+ +KRKCLFDEKIVLS+ LK + S+ +R+ TA DA + ++ L + E
Sbjct: 492 IPRKRKCLFDEKIVLSSEFLKKSIQSSSDLIRKRRKVPHTAYDAWKVYQIANLSQGFLEA 551
Query: 347 LIPCV-VDFGSLVSRTKIAGVSVETAATTTDSFIAQ-SP-VTQMSAKPAEICENPVV 508
LIPC+ ++ SL K+ + D + SP V Q+ + A E P +
Sbjct: 552 LIPCISLELRSLFHAKKLMTPELVVNVEAPDGLVVPGSPTVNQLLKETAIAPETPAI 608
>ref|XP_006338678.1| PREDICTED: sister chromatid cohesion 1 protein 2-like [Solanum
tuberosum]
Length = 627
Score = 56.2 bits (134), Expect = 5e-06
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 167 LEKKRKCLFDEKIVLSNRVLKHCLDDKSNSATRRKGRRQTALDAPRACKMPTLPKSLFER 346
+ +KRKC+FDE IV+ N V KH + D ++ +R+ ++ A + K+ +LP+S E
Sbjct: 390 ISRKRKCIFDESIVIPNEVFKHWIGDANDLVCKRRKAPHSSYFAWKVHKISSLPQSFEEP 449
Query: 347 LIPC--VVDFGSLVSRTKIA 400
LIPC +D S +S+ + A
Sbjct: 450 LIPCSLSIDIISAISKIRSA 469