BLASTX nr result
ID: Catharanthus23_contig00038140
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00038140
(225 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006344531.1| PREDICTED: ribulose bisphosphate carboxylase... 99 6e-19
ref|XP_004243079.1| PREDICTED: ribulose bisphosphate carboxylase... 99 6e-19
ref|XP_006453353.1| hypothetical protein CICLE_v10009532mg [Citr... 98 1e-18
ref|XP_006453352.1| hypothetical protein CICLE_v10009532mg [Citr... 98 1e-18
gb|EXB55399.1| hypothetical protein L484_016767 [Morus notabilis] 97 2e-18
ref|XP_002531030.1| ribulose-bisphosphate carboxylase, putative ... 97 3e-18
ref|XP_004296442.1| PREDICTED: ribulose bisphosphate carboxylase... 92 6e-17
ref|XP_002270117.1| PREDICTED: ribulose bisphosphate carboxylase... 92 7e-17
gb|AFK34410.1| unknown [Lotus japonicus] 91 1e-16
ref|XP_003610095.1| Ribulose bisphosphate carboxylase small chai... 91 2e-16
gb|EOY31864.1| Ribulose bisphosphate carboxylase family protein ... 90 4e-16
gb|EMJ24775.1| hypothetical protein PRUPE_ppa012300mg [Prunus pe... 89 5e-16
gb|AFK37376.1| unknown [Lotus japonicus] 89 8e-16
ref|XP_006856657.1| hypothetical protein AMTR_s00054p00039660 [A... 87 2e-15
gb|ABK96070.1| unknown [Populus trichocarpa] 87 2e-15
gb|ABK25403.1| unknown [Picea sitchensis] 85 1e-14
ref|XP_002990955.1| hypothetical protein SELMODRAFT_236158 [Sela... 84 3e-14
ref|XP_002982855.1| hypothetical protein SELMODRAFT_17395 [Selag... 82 6e-14
ref|NP_001045917.1| Os02g0152400 [Oryza sativa Japonica Group] g... 80 2e-13
pdb|1IR1|S Chain S, Crystal Structure Of Spinach Ribulose-1,5-Bi... 79 6e-13
>ref|XP_006344531.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Solanum tuberosum]
Length = 169
Score = 99.0 bits (245), Expect = 6e-19
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGCND SQVLNEIQECKKA+PNA+IRCLAFDN KQ QCMAF+IQKPA
Sbjct: 119 LPMFGCNDSSQVLNEIQECKKAYPNAFIRCLAFDNVKQAQCMAFLIQKPA 168
>ref|XP_004243079.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Solanum lycopersicum]
Length = 169
Score = 99.0 bits (245), Expect = 6e-19
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGCND SQVLNEIQECKKA+PNA+IRCLAFDN KQ QCMAF+IQKPA
Sbjct: 119 LPMFGCNDSSQVLNEIQECKKAYPNAFIRCLAFDNVKQAQCMAFLIQKPA 168
>ref|XP_006453353.1| hypothetical protein CICLE_v10009532mg [Citrus clementina]
gi|567922696|ref|XP_006453354.1| hypothetical protein
CICLE_v10009532mg [Citrus clementina]
gi|557556579|gb|ESR66593.1| hypothetical protein
CICLE_v10009532mg [Citrus clementina]
gi|557556580|gb|ESR66594.1| hypothetical protein
CICLE_v10009532mg [Citrus clementina]
Length = 172
Score = 98.2 bits (243), Expect = 1e-18
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPATTAA 164
LPMFGCND SQ+LNEIQECKKA+PNAYIRCLAF+N KQ QCM+F+IQKP TT +
Sbjct: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
>ref|XP_006453352.1| hypothetical protein CICLE_v10009532mg [Citrus clementina]
gi|568840482|ref|XP_006474196.1| PREDICTED: ribulose
bisphosphate carboxylase small chain, chloroplastic-like
[Citrus sinensis] gi|557556578|gb|ESR66592.1|
hypothetical protein CICLE_v10009532mg [Citrus
clementina]
Length = 201
Score = 98.2 bits (243), Expect = 1e-18
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPATTAA 164
LPMFGCND SQ+LNEIQECKKA+PNAYIRCLAF+N KQ QCM+F+IQKP TT +
Sbjct: 147 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 200
>gb|EXB55399.1| hypothetical protein L484_016767 [Morus notabilis]
Length = 176
Score = 97.1 bits (240), Expect = 2e-18
Identities = 43/52 (82%), Positives = 47/52 (90%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPATT 158
LPMFGCND SQVLNEI+ECK+A+PNAYIRCLAFDN Q QCMAF+IQKP TT
Sbjct: 119 LPMFGCNDSSQVLNEIRECKEAYPNAYIRCLAFDNKHQVQCMAFVIQKPTTT 170
>ref|XP_002531030.1| ribulose-bisphosphate carboxylase, putative [Ricinus communis]
gi|223529383|gb|EEF31347.1| ribulose-bisphosphate
carboxylase, putative [Ricinus communis]
Length = 94
Score = 96.7 bits (239), Expect = 3e-18
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPATT 158
LPMFGCND SQVLNEI ECKKA+PNAYIRCLAFDNT+Q QCM+F+IQ P T
Sbjct: 41 LPMFGCNDSSQVLNEINECKKAYPNAYIRCLAFDNTRQAQCMSFVIQNPKAT 92
>ref|XP_004296442.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 190
Score = 92.4 bits (228), Expect = 6e-17
Identities = 45/57 (78%), Positives = 48/57 (84%), Gaps = 3/57 (5%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKP---ATTAA 164
LPMFGC DPS VLNEIQECKK +PNAYIRC+AFDN Q QCMAFIIQKP ATT+A
Sbjct: 134 LPMFGCIDPSLVLNEIQECKKTYPNAYIRCVAFDNQNQGQCMAFIIQKPNIAATTSA 190
>ref|XP_002270117.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic [Vitis vinifera]
gi|297735404|emb|CBI17844.3| unnamed protein product
[Vitis vinifera]
Length = 169
Score = 92.0 bits (227), Expect = 7e-17
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKP 149
LPMFGCND SQVLNEI ECKK +PNAYIRCLAFDN Q QCMAF+IQKP
Sbjct: 118 LPMFGCNDASQVLNEIHECKKTYPNAYIRCLAFDNEHQGQCMAFVIQKP 166
>gb|AFK34410.1| unknown [Lotus japonicus]
Length = 173
Score = 91.3 bits (225), Expect = 1e-16
Identities = 41/50 (82%), Positives = 45/50 (90%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGCND SQVLNEIQECK+A+PNAYIRC+AFDN + Q MAFIIQKPA
Sbjct: 118 LPMFGCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPA 167
>ref|XP_003610095.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
gi|355511150|gb|AES92292.1| Ribulose bisphosphate
carboxylase small chain [Medicago truncatula]
gi|388491552|gb|AFK33842.1| unknown [Medicago
truncatula]
Length = 173
Score = 90.5 bits (223), Expect = 2e-16
Identities = 40/52 (76%), Positives = 43/52 (82%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPATT 158
LPMFGCND SQVLNEI ECKK +PNAYIRCLAFDN + Q MAF+I KP TT
Sbjct: 119 LPMFGCNDSSQVLNEINECKKTYPNAYIRCLAFDNKRHMQAMAFVIHKPTTT 170
>gb|EOY31864.1| Ribulose bisphosphate carboxylase family protein [Theobroma cacao]
Length = 248
Score = 89.7 bits (221), Expect = 4e-16
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKP 149
LPMFGCN+ SQVLNEI ECKKA+PNAYIRCLAFD+ Q QCM+F+IQKP
Sbjct: 199 LPMFGCNNSSQVLNEIHECKKAYPNAYIRCLAFDSKHQAQCMSFVIQKP 247
>gb|EMJ24775.1| hypothetical protein PRUPE_ppa012300mg [Prunus persica]
Length = 175
Score = 89.4 bits (220), Expect = 5e-16
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGC DPS VLNEI +CK A+PNAYIRC+AFDN Q QCMAFIIQKPA
Sbjct: 118 LPMFGCTDPSLVLNEIYQCKTAYPNAYIRCMAFDNINQGQCMAFIIQKPA 167
>gb|AFK37376.1| unknown [Lotus japonicus]
Length = 173
Score = 88.6 bits (218), Expect = 8e-16
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMF CND SQVLNEIQECK+A+PNAYIRC+AFDN + Q MAFIIQKPA
Sbjct: 118 LPMFDCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPA 167
>ref|XP_006856657.1| hypothetical protein AMTR_s00054p00039660 [Amborella trichopoda]
gi|548860557|gb|ERN18124.1| hypothetical protein
AMTR_s00054p00039660 [Amborella trichopoda]
Length = 169
Score = 87.4 bits (215), Expect = 2e-15
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGC D SQVL EI+ECK+ +P+AYIRCLAFDN KQ QCMAF+IQKP+
Sbjct: 118 LPMFGCADSSQVLREIEECKRTYPSAYIRCLAFDNQKQVQCMAFLIQKPS 167
>gb|ABK96070.1| unknown [Populus trichocarpa]
Length = 170
Score = 87.0 bits (214), Expect = 2e-15
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKP 149
LPMFGC D SQVL EI ECKKA+P+AYIRCLAFDN Q QCMAF+IQKP
Sbjct: 120 LPMFGCTDSSQVLEEIHECKKAYPDAYIRCLAFDNKHQGQCMAFVIQKP 168
>gb|ABK25403.1| unknown [Picea sitchensis]
Length = 188
Score = 84.7 bits (208), Expect = 1e-14
Identities = 35/52 (67%), Positives = 45/52 (86%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPATT 158
LPMFGC + +QVL+E++ECKKA+PNAYIRCL FDN +Q QC+AFI+ KP+ T
Sbjct: 136 LPMFGCTNSAQVLSELEECKKAYPNAYIRCLGFDNKRQTQCIAFIVHKPSHT 187
>ref|XP_002990955.1| hypothetical protein SELMODRAFT_236158 [Selaginella moellendorffii]
gi|300141286|gb|EFJ07999.1| hypothetical protein
SELMODRAFT_236158 [Selaginella moellendorffii]
Length = 160
Score = 83.6 bits (205), Expect = 3e-14
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGC+DP+QVL EI+ECK +PNAYIR L FDN KQ QC++FI+QKP+
Sbjct: 106 LPMFGCSDPAQVLREIEECKSMYPNAYIRVLGFDNIKQVQCISFIVQKPS 155
>ref|XP_002982855.1| hypothetical protein SELMODRAFT_17395 [Selaginella moellendorffii]
gi|300149445|gb|EFJ16100.1| hypothetical protein
SELMODRAFT_17395 [Selaginella moellendorffii]
Length = 132
Score = 82.4 bits (202), Expect = 6e-14
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGC+DP+QVL EI+ECK +PNAYIR L FDN +Q QC++FI+QKP+
Sbjct: 83 LPMFGCSDPAQVLREIEECKSMYPNAYIRVLGFDNIRQVQCISFIVQKPS 132
>ref|NP_001045917.1| Os02g0152400 [Oryza sativa Japonica Group]
gi|51535337|dbj|BAD38596.1| putative ribulose
1,5-bisphosphate carboxylase small subunit [Oryza sativa
Japonica Group] gi|51535980|dbj|BAD38061.1| putative
ribulose 1,5-bisphosphate carboxylase small subunit
[Oryza sativa Japonica Group]
gi|113535448|dbj|BAF07831.1| Os02g0152400 [Oryza sativa
Japonica Group] gi|218190079|gb|EEC72506.1| hypothetical
protein OsI_05882 [Oryza sativa Indica Group]
gi|222622186|gb|EEE56318.1| hypothetical protein
OsJ_05407 [Oryza sativa Japonica Group]
Length = 183
Score = 80.5 bits (197), Expect = 2e-13
Identities = 30/56 (53%), Positives = 47/56 (83%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPATTAAPP 170
LPMFGC+D + VL E++EC++ +P+A+IR +AFD+++QCQCM+F++ KP + AA P
Sbjct: 121 LPMFGCSDAAAVLREVEECRREYPDAFIRLIAFDSSRQCQCMSFVVHKPPSAAASP 176
>pdb|1IR1|S Chain S, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
gi|20150192|pdb|1IR1|T Chain T, Crystal Structure Of
Spinach Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) COMPLEXED WITH CO2, MG2+ AND 2-
Carboxyarabinitol-1,5-Bisphosphate
gi|20150194|pdb|1IR1|U Chain U, Crystal Structure Of
Spinach Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) COMPLEXED WITH CO2, MG2+ AND 2-
Carboxyarabinitol-1,5-Bisphosphate
gi|20150196|pdb|1IR1|V Chain V, Crystal Structure Of
Spinach Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) COMPLEXED WITH CO2, MG2+ AND 2-
Carboxyarabinitol-1,5-Bisphosphate
Length = 123
Score = 79.0 bits (193), Expect = 6e-13
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = +3
Query: 3 LPMFGCNDPSQVLNEIQECKKAHPNAYIRCLAFDNTKQCQCMAFIIQKPA 152
LPMFGC DP+QVLNE++ECKK +PNA+IR + FD+ +Q QC++FI KPA
Sbjct: 72 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 121