BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00038100
         (239 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    42   6e-06

>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 42.0 bits (97), Expect(2) = 6e-06
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +2

Query: 119 SVRART*FFSDVSKSSEYIPCDICFRAKQTQEMFPISLNK 238
           SV +    FS  S +     CD+CFRAKQT+E+FP S+NK
Sbjct: 540 SVLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINK 579



 Score = 33.5 bits (75), Expect(2) = 6e-06
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 48  VVPAKINKMTSNASRKLWHQRLSHP 122
           V PAKI+    ++ + LWHQRL HP
Sbjct: 513 VTPAKIHTANVDSDQALWHQRLGHP 537