BLASTX nr result
ID: Catharanthus23_contig00037192
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00037192
(292 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I6J|A Chain A, Crystal Structure Of A Pseudo-16-Mer Dna Wit... 205 4e-51
prf||0711245A protein gag/pol/env 205 4e-51
pdb|1QAI|A Chain A, Crystal Structures Of The N-Terminal Fragmen... 205 4e-51
pdb|4MH8|A Chain A, The Crystal Structure Of The Monomeric Rever... 205 4e-51
gb|AGU99868.1| gag-pro-pol polyprotein, partial [PreXMRV-1/PreXM... 205 4e-51
pdb|4HKQ|A Chain A, Xmrv Reverse Transcriptase In Complex With R... 205 4e-51
ref|NP_955591.1| p80 RT [Moloney murine leukemia virus] 205 4e-51
gb|AAC98548.1| pol polypeptide [Murine leukemia virus] 205 4e-51
gb|AAB64160.1| Pol [synthetic construct] 205 4e-51
gb|AAA66622.1| reverse transcriptase, partial [Moloney murine le... 205 4e-51
gb|AAC82568.1| Pr180 [Moloney murine leukemia virus] 205 4e-51
gb|AAL69910.1|AF462057_3 Pr180 gag-pro-pol polyprotein [Moloney ... 205 4e-51
gb|AAA92679.1| gag-pol polyprotein [Murine leukemia virus] 205 4e-51
gb|ABD49687.1| putative gag-pro-pol polyprotein [Xenotropic MuLV... 205 4e-51
sp|Q2F7J3.1|POL_XMRV3 RecName: Full=Gag-Pol polyprotein; Short=P... 205 4e-51
sp|Q2F7J0.1|POL_XMRV4 RecName: Full=Gag-Pol polyprotein; Short=P... 205 4e-51
dbj|BAD52416.1| POL polyprotein precursor, partial [Murine leuke... 205 4e-51
dbj|BAD52413.1| POL polyprotein precursor [Murine leukemia virus] 205 4e-51
pdb|1D0E|A Chain A, Crystal Structures Of The N-Terminal Fragmen... 205 4e-51
pdb|1D1U|A Chain A, Use Of An N-Terminal Fragment From Moloney M... 205 4e-51
>pdb|1I6J|A Chain A, Crystal Structure Of A Pseudo-16-Mer Dna With Stacked
Guanines And Two G-A Mispairs Complexed With The N-
Terminal Fragment Of Moloney Murine Leukemia Virus
Reverse Transcriptase
Length = 256
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 90 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 149
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 150 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 185
>prf||0711245A protein gag/pol/env
Length = 2514
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 881 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 940
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 941 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 976
>pdb|1QAI|A Chain A, Crystal Structures Of The N-Terminal Fragment From Moloney
Murine Leukemia Virus Reverse Transcriptase Complexed
With Nucleic Acid: Functional Implications For
Template-Primer Binding To The Fingers Domain
gi|7546497|pdb|1QAI|B Chain B, Crystal Structures Of The
N-Terminal Fragment From Moloney Murine Leukemia Virus
Reverse Transcriptase Complexed With Nucleic Acid:
Functional Implications For Template-Primer Binding To
The Fingers Domain gi|157832010|pdb|1MML|A Chain A,
Mechanistic Implications From The Structure Of A
Catalytic Fragment Of Mmlv Reverse Transcriptase
Length = 265
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 103 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 162
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 163 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 198
>pdb|4MH8|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 652
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 93 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 152
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 153 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 188
>gb|AGU99868.1| gag-pro-pol polyprotein, partial [PreXMRV-1/PreXMRV-2 recombinant]
gi|539195905|gb|AGU99869.1| gag-pro-pol polyprotein,
partial [PreXMRV-1/PreXMRV-2 recombinant]
gi|539195907|gb|AGU99870.1| gag-pro-pol polyprotein,
partial [PreXMRV-1/PreXMRV-2 recombinant]
gi|539195909|gb|AGU99871.1| gag-pro-pol polyprotein,
partial [PreXMRV-1/PreXMRV-2 recombinant]
gi|539195911|gb|AGU99872.1| gag-pro-pol polyprotein,
partial [PreXMRV-1/PreXMRV-2 recombinant]
gi|539195913|gb|AGU99873.1| gag-pro-pol polyprotein,
partial [PreXMRV-1/PreXMRV-2 recombinant]
Length = 286
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 181 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 240
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 241 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 276
>pdb|4HKQ|A Chain A, Xmrv Reverse Transcriptase In Complex With Rna/dna Hybrid
Length = 681
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 122 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 181
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 182 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 217
>ref|NP_955591.1| p80 RT [Moloney murine leukemia virus]
Length = 671
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 111 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 170
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 171 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 206
>gb|AAC98548.1| pol polypeptide [Murine leukemia virus]
Length = 1204
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 237 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 296
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 297 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 332
>gb|AAB64160.1| Pol [synthetic construct]
Length = 1199
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 232 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 291
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 292 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 327
>gb|AAA66622.1| reverse transcriptase, partial [Moloney murine leukemia virus]
Length = 560
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 461 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 520
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 521 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 556
>gb|AAC82568.1| Pr180 [Moloney murine leukemia virus]
Length = 1737
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 770 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 829
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 830 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 865
>gb|AAL69910.1|AF462057_3 Pr180 gag-pro-pol polyprotein [Moloney murine leukemia virus]
Length = 1738
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 771 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 830
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 831 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 866
>gb|AAA92679.1| gag-pol polyprotein [Murine leukemia virus]
Length = 1736
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 770 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 829
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 830 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 865
>gb|ABD49687.1| putative gag-pro-pol polyprotein [Xenotropic MuLV-related virus VP62]
Length = 1733
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 769 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 828
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 829 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 864
>sp|Q2F7J3.1|POL_XMRV3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
RecName: Full=Matrix protein p15; Short=MA; Contains:
RecName: Full=RNA-binding phosphoprotein p12; AltName:
Full=pp12; Contains: RecName: Full=Capsid protein p30;
Short=CA; Contains: RecName: Full=Nucleocapsid protein
p10; Short=NC-pol; Contains: RecName: Full=Protease p14;
Short=PR; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H p80; Short=RT; Contains:
RecName: Full=Integrase p46; Short=IN
gi|82582297|gb|ABB83225.1| putative gag-pro-pol
polyprotein [Xenotropic MuLV-related virus VP35]
Length = 1733
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 769 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 828
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 829 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 864
>sp|Q2F7J0.1|POL_XMRV4 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains:
RecName: Full=Matrix protein p15; Short=MA; Contains:
RecName: Full=RNA-binding phosphoprotein p12; AltName:
Full=pp12; Contains: RecName: Full=Capsid protein p30;
Short=CA; Contains: RecName: Full=Nucleocapsid protein
p10; Short=NC-pol; Contains: RecName: Full=Protease p14;
Short=PR; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H p80; Short=RT; Contains:
RecName: Full=Integrase p46; Short=IN
gi|82582301|gb|ABB83228.1| putative gag-pro-pol
polyprotein [Xenotropic MuLV-related virus VP42]
Length = 1733
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 769 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 828
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 829 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 864
>dbj|BAD52416.1| POL polyprotein precursor, partial [Murine leukemia virus]
Length = 1199
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 232 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 291
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 292 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 327
>dbj|BAD52413.1| POL polyprotein precursor [Murine leukemia virus]
Length = 1199
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 232 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 291
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 292 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 327
>pdb|1D0E|A Chain A, Crystal Structures Of The N-Terminal Fragment From Moloney
Murine Leukemia Virus Reverse Transcriptase Complexed
With Nucleic Acid: Functional Implications For
Template-Primer Binding To The Fingers Domain
gi|7546226|pdb|1D0E|B Chain B, Crystal Structures Of The
N-Terminal Fragment From Moloney Murine Leukemia Virus
Reverse Transcriptase Complexed With Nucleic Acid:
Functional Implications For Template-Primer Binding To
The Fingers Domain gi|7546282|pdb|1QAJ|A Chain A,
Crystal Structures Of The N-Terminal Fragment From
Moloney Murine Leukemia Virus Reverse Transcriptase
Complexed With Nucleic Acid: Functional Implications For
Template-Primer Binding To The Fingers Domain
gi|7546283|pdb|1QAJ|B Chain B, Crystal Structures Of The
N-Terminal Fragment From Moloney Murine Leukemia Virus
Reverse Transcriptase Complexed With Nucleic Acid:
Functional Implications For Template-Primer Binding To
The Fingers Domain
Length = 259
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 93 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 152
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 153 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 188
>pdb|1D1U|A Chain A, Use Of An N-Terminal Fragment From Moloney Murine Leukemia
Virus Reverse Transcriptase To Facilitate
Crystallization And Analysis Of A Pseudo-16-Mer Dna
Molecule Containing G- A Mispairs gi|33357399|pdb|1N4L|A
Chain A, A Dna Analogue Of The Polypurine Tract Of Hiv-1
gi|75765904|pdb|1ZTT|A Chain A, Netropsin Bound To
D(cttaattcgaattaag) In Complex With Mmlv Rt Catalytic
Fragment gi|75765907|pdb|1ZTW|A Chain A,
D(Cttaattcgaattaag) Complexed With Moloney Murine
Leukemia Virus Reverse Transcriptase Catalytic Fragment
gi|110591432|pdb|2FJV|A Chain A, Rt29 Bound To
D(Cttaattcgaattaag) In Complex With Mmlv Rt Catalytic
Fragment gi|110591435|pdb|2FJW|A Chain A,
D(Cttgaatgcattcaag) In Complex With Mmlv Rt Catalytic
Fragment gi|110591438|pdb|2FJX|A Chain A, Rt29 Bound To
D(Cttgaatgcattcaag) In Complex With Mmlv Rt Catalytic
Fragment gi|122920204|pdb|2FVP|A Chain A, A Structural
Study Of The Ca Dinucleotide Step In The Integrase
Processing Site Of Moloney Murine Leukemia Virus
gi|122920207|pdb|2FVQ|A Chain A, A Structural Study Of
The Ca Dinucleotide Step In The Integrase Processing
Site Of Moloney Murine Leukemia Virus
gi|122920210|pdb|2FVR|A Chain A, A Structural Study Of
The Ca Dinucleotide Step In The Integrase Processing
Site Of Moloney Murine Leukemia Virus
gi|122920213|pdb|2FVS|A Chain A, A Structural Study Of
The Ca Dinucleotide Step In The Integrase Processing
Site Of Moloney Murine Leukemia Virus
gi|194368530|pdb|2R2R|A Chain A, D(Attagttataactaat)
Complexed With Mmlv Rt Catalytic Fragment
gi|194368533|pdb|2R2S|A Chain A, Co(Iii)bleomycinb2
Bound To D(Attagttataactaat) Complexed With Mmlv Rt
Catalytic Fragment gi|194368536|pdb|2R2T|A Chain A,
D(Atttagttaactaaat) Complexed With Mmlv Rt Catalytic
Fragment gi|194368539|pdb|2R2U|A Chain A,
Co(Iii)bleomycinb2 BithiazoleC-Terminal Tail Domain
Bound To D(Atttagttaactaaat) Complexed With Mmlv Rt
Catalytic Fragment gi|237823866|pdb|3FSI|A Chain A,
Crystal Structure Of A Trypanocidal 4,4'-
Bis(Imidazolinylamino)diphenylamine Bound To Dna
Length = 255
Score = 205 bits (522), Expect = 4e-51
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 290 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 111
VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE
Sbjct: 89 VQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFE 148
Query: 110 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALRRDL 3
WRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL RDL
Sbjct: 149 WRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDL 184