BLASTX nr result
ID: Catharanthus23_contig00035708
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00035708
(328 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65981.1| hypothetical protein VITISV_017970 [Vitis vinifera] 55 6e-12
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 54 2e-11
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 50 4e-11
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 47 4e-10
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 47 5e-10
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 45 8e-10
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 45 8e-10
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 47 9e-10
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 47 1e-09
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 47 1e-09
emb|CAN73519.1| hypothetical protein VITISV_010313 [Vitis vinifera] 47 1e-09
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 45 1e-09
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 45 1e-09
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 46 1e-09
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 47 2e-09
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 49 3e-09
gb|EOY30029.1| Uncharacterized protein TCM_037378 [Theobroma cacao] 50 4e-09
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 45 5e-09
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 46 7e-09
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 45 1e-08
>emb|CAN65981.1| hypothetical protein VITISV_017970 [Vitis vinifera]
Length = 421
Score = 55.1 bits (131), Expect(2) = 6e-12
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +3
Query: 138 LKGFKKETLYILLGKTVCNSTTLISKTINEKTMLWHRRIGHISEKGHYHLQKQNLLC 308
+ G K+ LYIL T+ + +T +KT+LWHRR+GH+S++G L KQ LLC
Sbjct: 56 MNGQKRNDLYILESHTLKGLMGSVLRTETDKTVLWHRRLGHLSDRGLKELHKQGLLC 112
Score = 40.8 bits (94), Expect(2) = 6e-12
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCK 129
G+TR L +V +VPDL RNLI L LD +FK + G L + K
Sbjct: 8 GMTRTLKEVMHVPDLKRNLIFLGTLDKSSYNFKAETGKLTISK 50
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 53.9 bits (128), Expect(2) = 2e-11
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +3
Query: 138 LKGFKKETLYILLGKTVCNSTTLISKTINEKTM--LWHRRIGHISEKGHYHLQKQNLLCS 311
LKG + TLY L G TV S + S ++K M LWH R+GH+ E+G L K++LL
Sbjct: 378 LKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAG 437
Query: 312 DKIDS 326
K+ S
Sbjct: 438 HKVKS 442
Score = 40.4 bits (93), Expect(2) = 2e-11
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1
Query: 16 LTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCK 129
L +VR+VP + +NLISLS LDS S+ K+G+LRV K
Sbjct: 335 LNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWK 372
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 50.4 bits (119), Expect(2) = 4e-11
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +3
Query: 138 LKGFKKETLYILLGKTVCNSTTLISKTINEKTMLWHRRIGHISEKGHYHLQKQNLLCSDK 317
+KG K LY L+G+TV + + + K T LWH+R+GHIS +G L+KQ +L + K
Sbjct: 90 MKGTIKIGLYTLIGQTVTSKVSTMLKEDMGTTKLWHQRLGHISHRGLQELEKQGVLGNYK 149
Query: 318 I 320
+
Sbjct: 150 L 150
Score = 42.7 bits (99), Expect(2) = 4e-11
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +1
Query: 4 VTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
+ R L VRY+P+L +NLISL LD R +FK + LRV + +L
Sbjct: 43 IERVLEDVRYIPELKKNLISLGMLDESRYTFKLEPNSLRVARGSL 87
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 47.4 bits (111), Expect(2) = 4e-10
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 LYILLGKTVCNSTTL--ISKTINEKTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ S T +SK KT LWH R+GH+SE G L K+NLL
Sbjct: 351 LYVLRGSTLHGSVTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLL 400
Score = 42.4 bits (98), Expect(2) = 4e-10
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VRY+P + RNLISLS LD+ + G+++V K +L
Sbjct: 294 GMTRTLKDVRYIPGMARNLISLSTLDAEGYKYSGLGGVVKVSKGSL 339
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 47.4 bits (111), Expect(2) = 5e-10
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 LYILLGKTVCNSTTLISKTINE--KTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ S T + T +E KT LWH R+GH+SE G L K+NLL
Sbjct: 401 LYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLL 450
Score = 42.0 bits (97), Expect(2) = 5e-10
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VR++P + RNLISLS LD+ + G+++V K +L
Sbjct: 344 GITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSL 389
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 45.4 bits (106), Expect(2) = 8e-10
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VRY+P + RNLISLS LD+ + +G+L+V K +L
Sbjct: 342 GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSL 387
Score = 43.1 bits (100), Expect(2) = 8e-10
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 138 LKG-FKKETLYILLGKTVCNSTTLISKTINE---KTMLWHRRIGHISEKGHYHLQKQNLL 305
LKG LY+L G T+ S + + N+ KT LWH R+GH+S G L K+NLL
Sbjct: 390 LKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLL 449
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 45.4 bits (106), Expect(2) = 8e-10
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VRY+P + RNLISLS LD+ + +G+L+V K +L
Sbjct: 342 GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSL 387
Score = 43.1 bits (100), Expect(2) = 8e-10
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 138 LKG-FKKETLYILLGKTVCNSTTLISKTINE---KTMLWHRRIGHISEKGHYHLQKQNLL 305
LKG LY+L G T+ S + + N+ KT LWH R+GH+S G L K+NLL
Sbjct: 390 LKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLL 449
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 47.4 bits (111), Expect(2) = 9e-10
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 LYILLGKTVCNSTTLISKTINE--KTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ S T + T +E KT LWH R+GH+SE G L K+NLL
Sbjct: 401 LYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLL 450
Score = 41.2 bits (95), Expect(2) = 9e-10
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VR++P + RNLISLS LD+ + G+++V K +L
Sbjct: 344 GMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSL 389
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 47.0 bits (110), Expect(2) = 1e-09
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 LYILLGKTVCNSTTL--ISKTINEKTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ S T +SK KT LWH R+GH+SE G L K+NLL
Sbjct: 398 LYVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLL 447
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VR++P + RNLISLS LD+ + G+++V K +L
Sbjct: 341 GMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSL 386
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 47.0 bits (110), Expect(2) = 1e-09
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 LYILLGKTVCNSTTL--ISKTINEKTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ S T +SK KT LWH R+GH+SE G L K+NLL
Sbjct: 341 LYVLRGSTLHGSITAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLL 390
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VR++P + RNLISLS LD+ + G+++V K +L
Sbjct: 284 GMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSL 329
>emb|CAN73519.1| hypothetical protein VITISV_010313 [Vitis vinifera]
Length = 322
Score = 47.4 bits (111), Expect(2) = 1e-09
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 138 LKGFKKETLYILLGKTVCNSTTLISKTINEKTMLWHRRIG-HISEKGHYHLQKQNLLCSD 314
+KG +K LY L G+TV ++ + +K NE LW R+ H+SEKG L KQ LL +
Sbjct: 137 MKGLRKNGLYTLQGETVDGTSIVAAKDRNEIAKLWCMRLSDHVSEKGLQILSKQGLLVKE 196
Query: 315 K 317
K
Sbjct: 197 K 197
Score = 40.8 bits (94), Expect(2) = 1e-09
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCK 129
G+ + LT V YV D NLISL LDS+ + K +NG L++ K
Sbjct: 89 GMKKTLTNVMYVLDFKGNLISLGVLDSMGCTIKIENGTLKILK 131
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 45.4 bits (106), Expect(2) = 1e-09
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VRY+P + RNLISLS LD+ + +G+L+V K +L
Sbjct: 342 GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSL 387
Score = 42.4 bits (98), Expect(2) = 1e-09
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +3
Query: 162 LYILLGKTVCNSTTLISKTINE---KTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ S + + N+ KT LWH R+GH+S G L K+NLL
Sbjct: 399 LYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLL 449
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 45.4 bits (106), Expect(2) = 1e-09
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VRY+P + RNLISLS LD+ + +G+L+V K +L
Sbjct: 344 GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSL 389
Score = 42.4 bits (98), Expect(2) = 1e-09
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 138 LKG-FKKETLYILLGKTVCNSTTLISKTINE---KTMLWHRRIGHISEKGHYHLQKQNLL 305
LKG LY+L G T+ S + + N+ KT LWH R+GH+S G L K+NLL
Sbjct: 392 LKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLL 451
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 46.2 bits (108), Expect(2) = 1e-09
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 LYILLGKTVCNSTTL--ISKTINEKTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ S T +SK KT LWH R+GH+SE G L K+NLL
Sbjct: 401 LYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLL 450
Score = 41.6 bits (96), Expect(2) = 1e-09
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VR++P + RNLISLS LD+ + G+++V K +L
Sbjct: 344 GMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSL 389
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 47.0 bits (110), Expect(2) = 2e-09
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL*KVLKRKLYTFFLV 180
G+ +LT VRY+P++ RNL+SL + SFK +NG L + + + R+ YT +L+
Sbjct: 338 GMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLL 397
Query: 181 R 183
+
Sbjct: 398 Q 398
Score = 40.4 bits (93), Expect(2) = 2e-09
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +3
Query: 159 TLYILLGKTVCNSTTLISKTINEKTMLWHRRIGHISEKGHYHLQKQNLLCSDKI 320
TLY+L + V + + K + T+LWHRR+GH+S+K L K+ LL K+
Sbjct: 393 TLYLLQWRPVTEESLSVVKR-QDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKV 445
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 48.9 bits (115), Expect(2) = 3e-09
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +3
Query: 138 LKGFKKETLYILLGKTVCNSTTLISKTINEKTMLWHRRIGHISEKGHYHLQKQNLLCSDK 317
+KG + LY+L G +V + + + ++T LWH R+GH+S KG L KQ LL D+
Sbjct: 392 MKGVNENGLYVLQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDR 451
Query: 318 I 320
I
Sbjct: 452 I 452
Score = 37.7 bits (86), Expect(2) = 3e-09
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = +1
Query: 10 RKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCK 129
R L +VR+ P L RNLISL LDSL FK + G L V K
Sbjct: 347 RSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRK 386
>gb|EOY30029.1| Uncharacterized protein TCM_037378 [Theobroma cacao]
Length = 346
Score = 49.7 bits (117), Expect(2) = 4e-09
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +3
Query: 138 LKGFKKETLYILLGKTVCNSTTLISKTINEK--TMLWHRRIGHISEKGHYHLQKQNLLCS 311
+KG + LY L+G TV + +++S E T LWH R+GH+SE+ L K++LLC
Sbjct: 74 IKGKLSDDLYCLVGNTVIETVSVVSSNHPEDDVTHLWHMRLGHMSERWIRKLSKRSLLCG 133
Query: 312 DK 317
K
Sbjct: 134 QK 135
Score = 36.6 bits (83), Expect(2) = 4e-09
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 22 KVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL*KVLKRKL 162
+V++VPD+ NLISLS LD + ++G+L + K L ++K KL
Sbjct: 33 EVKHVPDMKNNLISLSLLDKKGYKYSGQDGVLNISKGAL-TIIKGKL 78
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 45.1 bits (105), Expect(2) = 5e-09
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 162 LYILLGKTVCNSTT--LISKTINEKTMLWHRRIGHISEKGHYHLQKQNLL 305
LY+L G T+ T ++SK KT +WH R+GH+SE G L K+NLL
Sbjct: 296 LYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLL 345
Score = 40.8 bits (94), Expect(2) = 5e-09
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G+TR L VR++P + RNLISLS LD+ + G+++V K +L
Sbjct: 239 GMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSL 284
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 46.2 bits (108), Expect(2) = 7e-09
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 138 LKGFKKETLYILLGKTVCNSTTLISKTINEKTMLWHRRIGHISEKGHYHLQKQNLL 305
LKG K++TLYIL G T + S + ++T LWH R+GH+S+KG L K+ L
Sbjct: 384 LKGQKRDTLYILDGVTE-EGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCL 438
Score = 39.3 bits (90), Expect(2) = 7e-09
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +1
Query: 16 LTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCK 129
LT VRY+P++ RNLISL L+ FK ++GIL++ K
Sbjct: 341 LTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVK 378
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 44.7 bits (104), Expect(2) = 1e-08
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +3
Query: 162 LYILLGKTVCNSTTLISKTINEKT-MLWHRRIGHISEKGHYHLQKQNLL 305
LY+LLG T+ + ++ + E+T M+WH+R+GH+SE+G L ++NLL
Sbjct: 399 LYMLLGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLKVLAERNLL 447
Score = 39.7 bits (91), Expect(2) = 1e-08
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 1 GVTRKLTKVRYVPDLHRNLISLSYLDSLRLSFKYKNGILRVCKENL 138
G RK+ VR+V L +NL+S+ LD L ++GIL+V K NL
Sbjct: 342 GTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNL 387