BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00035594
         (245 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79427.1|AC025808_9 F18O14.19 [Arabidopsis thaliana]              57   3e-06
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    57   3e-06
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...    56   4e-06
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi...    56   4e-06

>gb|AAF79427.1|AC025808_9 F18O14.19 [Arabidopsis thaliana]
          Length = 1158

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +3

Query: 3   DRLKKRRIGMGEASDEVYHFKYMTDGLATAAMVDHSEKT*L--WHR*LGHPSFQSLVYLP 176
           DR+ K  IG GE  + +Y F+    GL  AA V H + T +  WHR LGHPS +++  L 
Sbjct: 264 DRITKTLIGAGEQLNGLYFFR----GLGVAAPVQHKDSTPIDVWHRRLGHPSSKAMEMLK 319

Query: 177 LKNKIPFQHDSNLCEVCLKAKHS 245
             +      DS  CE+C+ AK +
Sbjct: 320 FSDFSSSGFDSKDCEICISAKQT 342


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/81 (40%), Positives = 42/81 (51%)
 Frame = +3

Query: 3   DRLKKRRIGMGEASDEVYHFKYMTDGLATAAMVDHSEKT*LWHR*LGHPSFQSLVYLPLK 182
           DR  K  IG GE    VY+   +T      A VD  +   LWH+ LGHPSF  L  LPL 
Sbjct: 491 DRSSKTLIGSGEERGGVYYLTDVTPAKIHTANVDSDQA--LWHQRLGHPSFSVLSSLPLF 548

Query: 183 NKIPFQHDSNLCEVCLKAKHS 245
           +K      S+ C+VC +AK +
Sbjct: 549 SKTSSTVTSHSCDVCFRAKQT 569


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   DRLKKRRIGMGEASDEVYHFKYMTDGLATAA-MVDHSEKT*LWHR*LGHPSFQSLVYLPL 179
           DR  +  IG GE  D VY   Y+TD   T    VD +    LWH+ LGHPSF  L  LPL
Sbjct: 474 DRFSRTLIGTGEERDGVY---YLTDAATTTVHKVDVTTDHALWHQRLGHPSFSVLSSLPL 530

Query: 180 KNKIPFQHDSNLCEVCLKAKHS 245
            +       S  C+VC +AK +
Sbjct: 531 FSGSSCSVSSRSCDVCFRAKQT 552


>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   DRLKKRRIGMGEASDEVYHFKYMTDGLATAA-MVDHSEKT*LWHR*LGHPSFQSLVYLPL 179
           DR  +  IG GE  D VY   Y+TD   T    VD +    LWH+ LGHPSF  L  LPL
Sbjct: 474 DRFSRTLIGTGEERDGVY---YLTDAATTTVHKVDITTDHALWHQRLGHPSFSVLSSLPL 530

Query: 180 KNKIPFQHDSNLCEVCLKAKHS 245
            +       S  C+VC +AK +
Sbjct: 531 FSGSSCSVSSRSCDVCFRAKQT 552