BLASTX nr result
ID: Catharanthus23_contig00034926
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00034926
(246 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 90 4e-16
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub... 89 8e-16
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 82 1e-13
emb|CBI34757.3| unnamed protein product [Vitis vinifera] 82 1e-13
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 82 1e-13
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr... 75 7e-12
gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlise... 74 2e-11
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu... 74 3e-11
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 74 3e-11
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su... 73 3e-11
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su... 73 3e-11
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 72 8e-11
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 70 4e-10
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe... 69 5e-10
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su... 66 4e-09
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no... 63 5e-08
gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 63 5e-08
gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 63 5e-08
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su... 62 8e-08
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su... 62 8e-08
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Solanum tuberosum]
Length = 1446
Score = 89.7 bits (221), Expect = 4e-16
Identities = 48/88 (54%), Positives = 63/88 (71%), Gaps = 8/88 (9%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV---LLRGRSER----IASDYWDFIPPDPQLEKN-NQS 87
YP +FKVSP+DMFG+TAI+AEV LL+ + +ASDYWDFIP D Q E + N S
Sbjct: 128 YPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQQTTGVSLASDYWDFIPYDAQQEASVNSS 187
Query: 86 STRRLLSHAQVYDIVKEVDPSVLQSFLK 3
+ +R+LSHAQVY I+K++DP L+ LK
Sbjct: 188 NYKRVLSHAQVYSILKDIDPGFLEGLLK 215
>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
lycopersicum]
Length = 1446
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/88 (51%), Positives = 61/88 (69%), Gaps = 8/88 (9%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV-------LLRGRSERIASDYWDFIPPDPQLEKN-NQS 87
YP +FKVSP+DMFG+TAI+AEV + + +ASDYWDFIP D Q E + N S
Sbjct: 128 YPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASDYWDFIPYDAQQEASVNSS 187
Query: 86 STRRLLSHAQVYDIVKEVDPSVLQSFLK 3
+ +R+LSHAQVY I+K++DP L+ L+
Sbjct: 188 NYKRVLSHAQVYSILKDIDPGFLEGLLR 215
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
subunit 1-like [Vitis vinifera]
Length = 1560
Score = 81.6 bits (200), Expect = 1e-13
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 8/87 (9%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV------LLRGRSER--IASDYWDFIPPDPQLEKNNQS 87
YP M+FKVS +D+F KTAI+ E+ L+ +S R + DYWDFIP DPQ E+N +
Sbjct: 169 YPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLN 228
Query: 86 STRRLLSHAQVYDIVKEVDPSVLQSFL 6
RR+LSHAQV+ ++K++DP ++ F+
Sbjct: 229 PNRRVLSHAQVHYLLKDIDPGFIKEFV 255
>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 81.6 bits (200), Expect = 1e-13
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 8/87 (9%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV------LLRGRSER--IASDYWDFIPPDPQLEKNNQS 87
YP M+FKVS +D+F KTAI+ E+ L+ +S R + DYWDFIP DPQ E+N +
Sbjct: 131 YPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLN 190
Query: 86 STRRLLSHAQVYDIVKEVDPSVLQSFL 6
RR+LSHAQV+ ++K++DP ++ F+
Sbjct: 191 PNRRVLSHAQVHYLLKDIDPGFIKEFV 217
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 81.6 bits (200), Expect = 1e-13
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 8/87 (9%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV------LLRGRSER--IASDYWDFIPPDPQLEKNNQS 87
YP M+FKVS +D+F KTAI+ E+ L+ +S R + DYWDFIP DPQ E+N +
Sbjct: 136 YPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLN 195
Query: 86 STRRLLSHAQVYDIVKEVDPSVLQSFL 6
RR+LSHAQV+ ++K++DP ++ F+
Sbjct: 196 PNRRVLSHAQVHYLLKDIDPGFIKEFV 222
>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
gi|557542783|gb|ESR53761.1| hypothetical protein
CICLE_v10018489mg [Citrus clementina]
Length = 1443
Score = 75.5 bits (184), Expect = 7e-12
Identities = 36/81 (44%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV--LLRGRSERIASDYWDFIPPDPQLEKNNQSSTRRLL 69
YP MRFK+S +D+ GKTAI+ E+ L +++++ DYW FIP D Q E+N+ R++L
Sbjct: 135 YPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVL 194
Query: 68 SHAQVYDIVKEVDPSVLQSFL 6
S QV ++K+VDPS+ + F+
Sbjct: 195 SCKQVSYLLKDVDPSIREEFI 215
>gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlisea aurea]
Length = 1380
Score = 74.3 bits (181), Expect = 2e-11
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVLLRGRSER----IASDYWDFIPPDPQLEKNNQSSTRR 75
YP M+F+VS R++F KTAI+AEV ++ +ASDYWD IP D ++++ S RR
Sbjct: 101 YPKMKFRVSTREVFAKTAIIAEVQEMAVNQHHCIGLASDYWDIIPKDSPQDQSDIPSNRR 160
Query: 74 LLSHAQVYDIVKEVDPSVLQSFLK 3
+L +QVY I+K+V P L++ LK
Sbjct: 161 VLYPSQVYSILKDVCPKTLEALLK 184
>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao]
Length = 1484
Score = 73.6 bits (179), Expect = 3e-11
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 7/86 (8%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVL------LRGRSER-IASDYWDFIPPDPQLEKNNQSS 84
YP M FK+S +D+F K+AI+ EV +R R ++ + SDYWDFIP D Q E++
Sbjct: 139 YPPMNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPSDYWDFIPKDEQQEESLIRP 198
Query: 83 TRRLLSHAQVYDIVKEVDPSVLQSFL 6
RR+LSH+QV ++K+VDP ++ F+
Sbjct: 199 NRRVLSHSQVRYLLKDVDPEFIKKFV 224
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 73.6 bits (179), Expect = 3e-11
Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 8/87 (9%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV---LLRGRSERIA-----SDYWDFIPPDPQLEKNNQS 87
YP MRFK+S DMF K+ I+ EV + + +R+A SDYWDFIP D Q E++
Sbjct: 136 YPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCR 195
Query: 86 STRRLLSHAQVYDIVKEVDPSVLQSFL 6
R++L+HAQV+ ++K++DP L+ F+
Sbjct: 196 PNRKILTHAQVHYLLKDIDPKFLKKFV 222
>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Citrus sinensis] gi|568847098|ref|XP_006477377.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X3 [Citrus sinensis]
gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1-like isoform X4 [Citrus
sinensis]
Length = 1443
Score = 73.2 bits (178), Expect = 3e-11
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVLLRG--RSERIASDYWDFIPPDPQLEKNNQSSTRRLL 69
YP MRFK+S +D+ GKTAI+ E+ + +++++ DYW FIP D Q E+N+ R++L
Sbjct: 135 YPRMRFKLSSKDLSGKTAIIVEIDEKPSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVL 194
Query: 68 SHAQVYDIVKEVDPSVLQSFL 6
S QV ++K+VDPS+ + F+
Sbjct: 195 SCKQVSYLLKDVDPSIREEFI 215
>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Citrus sinensis]
Length = 1481
Score = 73.2 bits (178), Expect = 3e-11
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVLLRG--RSERIASDYWDFIPPDPQLEKNNQSSTRRLL 69
YP MRFK+S +D+ GKTAI+ E+ + +++++ DYW FIP D Q E+N+ R++L
Sbjct: 173 YPRMRFKLSSKDLSGKTAIIVEIDEKPSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVL 232
Query: 68 SHAQVYDIVKEVDPSVLQSFL 6
S QV ++K+VDPS+ + F+
Sbjct: 233 SCKQVSYLLKDVDPSIREEFI 253
>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1438
Score = 72.0 bits (175), Expect = 8e-11
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVLLRGRSERIASDYWDFIPPDPQLEKNNQSSTRRLLSH 63
YP MRFKVS R++F ++ I+ E + + DYWDFIP DPQ ++ N + R++LSH
Sbjct: 128 YPRMRFKVSSRELFRRSTIIVEA-----AGELPPDYWDFIPKDPQHDETNTNPHRKVLSH 182
Query: 62 AQVYDIVKEVDPSVLQSFL 6
AQV+ ++ +VD + + F+
Sbjct: 183 AQVHFLLSDVDSNFITKFV 201
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 69.7 bits (169), Expect = 4e-10
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVL--------LRGRSERIASDYWDFIPPDPQLEKNNQS 87
YP M+F VS ++F K I+A+ RG +++A+DYWD IP D Q E+N
Sbjct: 131 YPAMKFSVSSEEIFRKNVIIAKFSERPTNKSQKRGFKKKLAADYWDIIPKDEQQEENITR 190
Query: 86 STRRLLSHAQVYDIVKEVDPSVLQSFL 6
+R+LSHAQV +++ +DP+ ++ F+
Sbjct: 191 PNQRVLSHAQVIHLLENIDPNFIRKFV 217
>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 69.3 bits (168), Expect = 5e-10
Identities = 32/80 (40%), Positives = 54/80 (67%)
Frame = -2
Query: 245 SYPIMRFKVSPRDMFGKTAIVAEVLLRGRSERIASDYWDFIPPDPQLEKNNQSSTRRLLS 66
+YP M+FKVS R++F ++AI+AE + + +DYWDFIP D Q +++ +R+LS
Sbjct: 141 NYPRMKFKVSTRELFKRSAIIAEA-----NGILPADYWDFIPKDAQQDESCMKPNKRVLS 195
Query: 65 HAQVYDIVKEVDPSVLQSFL 6
HAQV+ ++K+VD ++ +
Sbjct: 196 HAQVHYLLKDVDTKFIEKIV 215
>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
max]
Length = 1369
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Frame = -2
Query: 245 SYPIMRFKVSPRDMFGKTAIVAEVLLRGRS--ERIASDYWDFIPPDPQLEKNNQSSTRRL 72
+YP M+F+VS D+F +TAI+ EV ++ I +DYW+FIP D Q E+N + RR+
Sbjct: 42 AYPSMKFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADYWNFIPCDAQQEENYVN--RRV 99
Query: 71 LSHAQVYDIVKEVDPSVLQSFL 6
LS AQV +++ VDP ++ ++
Sbjct: 100 LSPAQVLNLLNGVDPDFIEKYI 121
>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
Length = 1410
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 9/88 (10%)
Frame = -2
Query: 242 YPIMRFKVSPR--DMFGKTAIVAEV------LLRGRSERIA-SDYWDFIPPDPQLEKNNQ 90
YP +FKVS D K+AI+AEV L R +R+ +DYW+F+P D L+++
Sbjct: 118 YPKTKFKVSSNEYDHLKKSAIIAEVNESTVTLQNKRPKRVLPADYWEFLPKDELLDESCI 177
Query: 89 SSTRRLLSHAQVYDIVKEVDPSVLQSFL 6
RR+LSHAQV+ ++K+VDP ++ F+
Sbjct: 178 RPNRRVLSHAQVHYLLKDVDPEFIKKFV 205
>gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1464
Score = 62.8 bits (151), Expect = 5e-08
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV----LLRGRSERIASDYWDFIPPDPQLEKNNQSSTRR 75
YP M+FK S D++ +TAI+ EV + + +DYWDF+P D Q E+N + RR
Sbjct: 134 YPAMKFKFSSNDLYRRTAIIVEVNDKASKKSLGRSLPADYWDFLPYDAQQEENYVN--RR 191
Query: 74 LLSHAQVYDIVKEVDPSVLQSFL 6
+LS QV ++ +VDP+ ++ ++
Sbjct: 192 VLSPGQVTSLLNDVDPNFIEKYV 214
>gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1463
Score = 62.8 bits (151), Expect = 5e-08
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEV----LLRGRSERIASDYWDFIPPDPQLEKNNQSSTRR 75
YP M+FK S D++ +TAI+ EV + + +DYWDF+P D Q E+N + RR
Sbjct: 134 YPAMKFKFSSNDLYRRTAIIVEVNDKASKKSLGRSLPADYWDFLPYDAQQEENYVN--RR 191
Query: 74 LLSHAQVYDIVKEVDPSVLQSFL 6
+LS QV ++ +VDP+ ++ ++
Sbjct: 192 VLSPGQVTSLLNDVDPNFIEKYV 214
>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
[Glycine max]
Length = 1381
Score = 62.0 bits (149), Expect = 8e-08
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVLLRGRS--ERIASDYWDFIPPDPQLEKNNQSSTRRLL 69
YP M+F+VS D+F +TAI+ EV ++ I +D+W+FIP D Q E+N + RR+L
Sbjct: 52 YPSMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFWNFIPCDAQQEENYVN--RRVL 109
Query: 68 SHAQVYDIVKEVDPSVLQSFL 6
S QV ++ +VDP ++ ++
Sbjct: 110 SPVQVNYLLNDVDPDFIEKYI 130
>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Glycine max]
Length = 1455
Score = 62.0 bits (149), Expect = 8e-08
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = -2
Query: 242 YPIMRFKVSPRDMFGKTAIVAEVLLRGRS--ERIASDYWDFIPPDPQLEKNNQSSTRRLL 69
YP M+F+VS D+F +TAI+ EV ++ I +D+W+FIP D Q E+N + RR+L
Sbjct: 129 YPSMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFWNFIPCDAQQEENYVN--RRVL 186
Query: 68 SHAQVYDIVKEVDPSVLQSFL 6
S QV ++ +VDP ++ ++
Sbjct: 187 SPVQVNYLLNDVDPDFIEKYI 207