BLASTX nr result

ID: Catharanthus23_contig00031202 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00031202
         (301 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006487889.1| PREDICTED: uncharacterized protein LOC102617...    47   4e-07
gb|ABA97563.1| retrotransposon protein, putative, unclassified [...    42   4e-06

>ref|XP_006487889.1| PREDICTED: uncharacterized protein LOC102617714 [Citrus sinensis]
          Length = 1238

 Score = 47.4 bits (111), Expect(2) = 4e-07
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -1

Query: 301 LDLVISPHQTAFILVGL*MIILSFVMGLCII*TARE---VKKGFMAIKIDLAKAYDHSDW 131
           LD ++SP+Q+AFIL  L  I  + ++G   +   R+    K G +A+K+D++KAYD  +W
Sbjct: 455 LDKIVSPNQSAFILNRL--ITDNIIIGYEYLNKIRQGKGKKNGMIALKLDISKAYDRVEW 512

Query: 130 FFLKNVMLAHGF 95
            FL+  M   GF
Sbjct: 513 NFLRCAMQKLGF 524



 Score = 32.0 bits (71), Expect(2) = 4e-07
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 98  FPSPLYDLISECVSTPSYSFLINRSPYGCLKP 3
           F S   +L   C++TPS+S LIN  P G ++P
Sbjct: 524 FSSNWIELTMNCITTPSFSVLINGVPKGQIQP 555


>gb|ABA97563.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 839

 Score = 41.6 bits (96), Expect(2) = 4e-06
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = -1

Query: 199 REVKKGFMAIKIDLAKAYDHSDWFFLKNVMLAHGF 95
           R  + G+ A+K+D++KAYD  +W FLK++ML  GF
Sbjct: 442 RNGETGYAALKLDMSKAYDRVEWGFLKDMMLKLGF 476



 Score = 34.7 bits (78), Expect(2) = 4e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 275 NSFHPGRSINDNTIICHGIMHYMNRKRGKKRFY 177
           ++F PGR I+DN ++ + + HYM +KR  +  Y
Sbjct: 416 SAFFPGRLISDNILVAYELTHYMRQKRNGETGY 448


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