BLASTX nr result

ID: Catharanthus23_contig00030348 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00030348
         (271 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ02381.1| hypothetical protein PRUPE_ppa003350mg [Prunus pe...    60   3e-07
gb|EOX93799.1| Basic helix-loop-helix DNA-binding superfamily pr...    56   4e-06

>gb|EMJ02381.1| hypothetical protein PRUPE_ppa003350mg [Prunus persica]
          Length = 583

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
 Frame = -2

Query: 270 PPPLQFEPV--LHAW-NTFSSGQDV--------NCSSEQS---FLNSNWEKGTDQFTQLE 133
           PPPL FE    + AW ++FS+  D+        NCSSEQS   F N NW+K  DQ    E
Sbjct: 12  PPPLHFEQTSSMPAWRSSFSTAMDIQATATADRNCSSEQSPDCFYNPNWDKSADQNIHFE 71

Query: 132 STLXXXXXXXXXXXXXXXXPNDAFAIRELIGKLGPLGGMSQPFP 1
           S L                 N++F IRELIGKLG +G   +  P
Sbjct: 72  SALSSMVSSPAASNSNIS--NESFVIRELIGKLGNIGSSGEISP 113


>gb|EOX93799.1| Basic helix-loop-helix DNA-binding superfamily protein, putative
           [Theobroma cacao]
          Length = 579

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 40/104 (38%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
 Frame = -2

Query: 270 PP--PLQFEPVLH----AWNTFSSGQDV-----NCSSEQS---FLNSNWEKGTDQFTQLE 133
           PP  PL F P L     AW + SS  ++     NCS +QS   FLN +WEK TD   Q +
Sbjct: 13  PPARPLHFGPSLSSPMPAWQSLSSAMEIQVTEMNCSPDQSQDCFLNPHWEKSTDYGLQFD 72

Query: 132 STLXXXXXXXXXXXXXXXXPNDAFAIRELIGKLGPLGGMSQPFP 1
           S L                 N++F IRELIGKLG +G   +  P
Sbjct: 73  SALSSMVSSPAASNSNIS--NESFMIRELIGKLGSIGNSGEISP 114


Top