BLASTX nr result
ID: Catharanthus23_contig00030138
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00030138
(251 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera] 62 4e-11
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 62 8e-11
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 62 8e-11
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 61 3e-10
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera] 61 3e-10
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera] 61 4e-10
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 59 5e-10
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 62 5e-10
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 60 5e-10
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380... 59 5e-10
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 60 8e-10
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 62 8e-10
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera] 60 8e-10
emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera] 62 1e-09
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 60 3e-09
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 57 1e-08
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 57 2e-08
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 57 2e-08
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 57 2e-08
gb|AEX61038.1| reverse transcriptase, partial [Chenopodium quinoa] 61 1e-07
>emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]
Length = 1461
Score = 62.4 bits (150), Expect(2) = 4e-11
Identities = 31/53 (58%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F + VCRL+K Y L+QAPRCWFAKL LK G QSYSDYS
Sbjct: 1076 MKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYS 1128
Score = 30.8 bits (68), Expect(2) = 4e-11
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
RT L++AA+ + + QMD+HN FLH DL E
Sbjct: 1043 RTFLAIAASKNWELH-QMDVHNAFLHGDLEE 1072
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 61.6 bits (148), Expect(2) = 8e-11
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F KVCRL+K Y L+QAPRCWF KL+D LK G Q Y DYS
Sbjct: 1106 MKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYS 1158
Score = 30.4 bits (67), Expect(2) = 8e-11
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
RTLL + A + + + QMD+HN FLH DL E
Sbjct: 1073 RTLLRLVAANQWEVY-QMDVHNAFLHGDLEE 1102
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 61.6 bits (148), Expect(2) = 8e-11
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F KVCRL+K Y L+QAPRCWF KL+D LK G Q Y DYS
Sbjct: 1106 MKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYS 1158
Score = 30.4 bits (67), Expect(2) = 8e-11
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
RTLL + A + + + QMD+HN FLH DL E
Sbjct: 1073 RTLLRLVAANQWEVY-QMDVHNAFLHGDLEE 1102
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 61.2 bits (147), Expect(2) = 3e-10
Identities = 30/53 (56%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F + VCRL+K Y L+QAPRCWF+KL LK G QSYSDYS
Sbjct: 793 MKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYS 845
Score = 28.9 bits (63), Expect(2) = 3e-10
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
R L++AA+ + + QMD+HN FLH DL E
Sbjct: 760 RAFLAIAASKNWELH-QMDVHNAFLHGDLEE 789
>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
Length = 1099
Score = 61.2 bits (147), Expect(2) = 3e-10
Identities = 30/53 (56%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F + VCRL+K Y L+QAPRCWF+KL LK G QSYSDYS
Sbjct: 714 MKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYS 766
Score = 28.9 bits (63), Expect(2) = 3e-10
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
R L++AA+ + + QMD+HN FLH DL E
Sbjct: 681 RAFLAIAASKNWELH-QMDVHNAFLHGDLEE 710
>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 60.8 bits (146), Expect(2) = 4e-10
Identities = 31/53 (58%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F VCRL+K Y L+QAPRCWFAKL LK G QSYSDYS
Sbjct: 920 MKLPPGFESXDPNLVCRLRKSLYGLKQAPRCWFAKLVTXLKGYGFLQSYSDYS 972
Score = 28.9 bits (63), Expect(2) = 4e-10
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
R L++AA+ + + QMD+HN FLH DL E
Sbjct: 887 RAFLAIAASKNWELH-QMDVHNAFLHGDLEE 916
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 58.5 bits (140), Expect(2) = 5e-10
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
++L P F KVCRL+K Y L+QAPRCWF+KL+ L+ G QSY DYS
Sbjct: 1111 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYS 1163
Score = 30.8 bits (68), Expect(2) = 5e-10
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
RT+L+VAA + QMD+HN FLH DL E
Sbjct: 1078 RTILAVAAAKDWEVH-QMDVHNAFLHGDLEE 1107
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 62.4 bits (150), Expect(2) = 5e-10
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+K P F RKVCRL+K Y L+QAPRCWFAKLT L + G Q SDYS
Sbjct: 1063 IKFPPGFGSDDNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYS 1115
Score = 26.9 bits (58), Expect(2) = 5e-10
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 50 QMDMHNTFLHRDL*E 94
QMD+HN FLH DL E
Sbjct: 1045 QMDVHNAFLHGDLDE 1059
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 60.5 bits (145), Expect(2) = 5e-10
Identities = 31/53 (58%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F VCRL K Y L+QAPRCWFAKL LK G QSYSDYS
Sbjct: 744 MKLPPGFESSDPNLVCRLWKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYS 796
Score = 28.9 bits (63), Expect(2) = 5e-10
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
R L++AA+ + + QMD+HN FLH DL E
Sbjct: 711 RAFLAIAASKNWELH-QMDVHNAFLHGDLEE 740
>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
At2g23330 [Arabidopsis thaliana]
gi|110742535|dbj|BAE99183.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 776
Score = 58.5 bits (140), Expect(2) = 5e-10
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
++L P F KVCRL+K Y L+QAPRCWF+KL+ L+ G QSY DYS
Sbjct: 391 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYS 443
Score = 30.8 bits (68), Expect(2) = 5e-10
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
RT+L+VAA + QMD+HN FLH DL E
Sbjct: 358 RTILAVAAAKDWEVH-QMDVHNAFLHGDLEE 387
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 59.7 bits (143), Expect(2) = 8e-10
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F KVCRL+K Y L+QAPRCWF KL+D L G QSY DYS
Sbjct: 1116 MKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYS 1168
Score = 28.9 bits (63), Expect(2) = 8e-10
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
RTLL A + + + QMD+HN FLH DL E
Sbjct: 1083 RTLLRNVAANQWEVY-QMDVHNAFLHGDLEE 1112
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 61.6 bits (148), Expect(2) = 8e-10
Identities = 30/53 (56%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
++ P F G + KVCRL+K Y L+QAPRCWFAKLT LK G Q SDYS
Sbjct: 1101 MQFPPGFRTGDKTKVCRLRKSLYGLKQAPRCWFAKLTSALKNYGFIQDISDYS 1153
Score = 26.9 bits (58), Expect(2) = 8e-10
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 50 QMDMHNTFLHRDL*E 94
QMD+HN FLH DL E
Sbjct: 1083 QMDVHNAFLHGDLDE 1097
>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 59.7 bits (143), Expect(2) = 8e-10
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F VCRL+K Y L+QAPRCWFAKL LK G QSYS+YS
Sbjct: 1076 MKLPPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSNYS 1128
Score = 28.9 bits (63), Expect(2) = 8e-10
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
R L++AA+ + + QMD+HN FLH DL E
Sbjct: 1043 RAFLAIAASKNWELH-QMDVHNAFLHGDLEE 1072
>emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]
Length = 1191
Score = 61.6 bits (148), Expect(2) = 1e-09
Identities = 31/53 (58%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F VCRL+K Y L+QAPRCWFAKL LK G QSYSDYS
Sbjct: 788 MKLPPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKLVTALKGYGFLQSYSDYS 840
Score = 26.6 bits (57), Expect(2) = 1e-09
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
R L++AA+ + + QMD+HN F H DL E
Sbjct: 755 RAFLAIAASKNWELH-QMDVHNAFSHGDLEE 784
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 59.7 bits (143), Expect(2) = 3e-09
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F KVCRL+K Y L+QAPRCWF KLT LK G QS +DYS
Sbjct: 948 MKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYS 1000
Score = 26.9 bits (58), Expect(2) = 3e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 50 QMDMHNTFLHRDL*E 94
QMD+HN FLH DL E
Sbjct: 930 QMDVHNAFLHGDLRE 944
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 57.0 bits (136), Expect(2) = 1e-08
Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL P F KVCRL+K Y L+QAPRCWF KL+D L G Q + DYS
Sbjct: 763 MKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYS 815
Score = 27.7 bits (60), Expect(2) = 1e-08
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 2 RTLLSVAATDSPQRFLQMDMHNTFLHRDL*E 94
RTLL + A + + + QMD++N FLH DL E
Sbjct: 730 RTLLRLVAANQWEVY-QMDVNNAFLHGDLDE 759
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 57.0 bits (136), Expect(2) = 2e-08
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL F KVCRL K Y L+QAPRCWF+KL+ LK+ G QS SDYS
Sbjct: 1083 MKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYS 1135
Score = 26.9 bits (58), Expect(2) = 2e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 50 QMDMHNTFLHRDL*E 94
QMD+HN FLH DL E
Sbjct: 1065 QMDVHNAFLHGDLKE 1079
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 57.0 bits (136), Expect(2) = 2e-08
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL F KVCRL K Y L+QAPRCWF+KL+ LK+ G QS SDYS
Sbjct: 724 MKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYS 776
Score = 26.9 bits (58), Expect(2) = 2e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 50 QMDMHNTFLHRDL*E 94
QMD+HN FLH DL E
Sbjct: 706 QMDVHNAFLHGDLKE 720
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 57.0 bits (136), Expect(2) = 2e-08
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+KL F KVCRL K Y L+QAPRCWF+KL+ LK+ G QS SDYS
Sbjct: 724 MKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYS 776
Score = 26.9 bits (58), Expect(2) = 2e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 50 QMDMHNTFLHRDL*E 94
QMD+HN FLH DL E
Sbjct: 706 QMDVHNAFLHGDLKE 720
>gb|AEX61038.1| reverse transcriptase, partial [Chenopodium quinoa]
Length = 87
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VKLSPWFSKGQERKVCRLQK--YSLEQAPRCWFAKLTDVLKEGGVCQSYSDYS 249
+K+ P F K KVCR++K Y L+Q PRCWF KL+ LK+ G QSYSDYS
Sbjct: 14 MKIPPGFEKNNSDKVCRIKKSLYGLKQEPRCWFEKLSTALKKYGFKQSYSDYS 66