BLASTX nr result
ID: Catharanthus23_contig00029862
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00029862
(232 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY19200.1| Retrotransposon, unclassified-like protein [Theob... 49 5e-09
gb|EOY02239.1| Uncharacterized protein TCM_016763 [Theobroma cacao] 45 1e-07
gb|EOY02242.1| Uncharacterized protein TCM_016767 [Theobroma cacao] 45 6e-07
gb|EOY25454.1| Uncharacterized protein TCM_026877 [Theobroma cacao] 43 2e-06
gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao] 43 2e-06
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 48 3e-06
emb|CAN77417.1| hypothetical protein VITISV_000477 [Vitis vinifera] 42 3e-06
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 42 6e-06
ref|XP_003633775.1| PREDICTED: uncharacterized protein LOC100854... 41 8e-06
>gb|EOY19200.1| Retrotransposon, unclassified-like protein [Theobroma cacao]
Length = 1368
Score = 48.5 bits (114), Expect(2) = 5e-09
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Frame = -3
Query: 143 CLT-CFF-ILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFSRGLN 6
C+T C+F +L+NG G F S G++Q D +SP+LFIL A+ SRG+N
Sbjct: 577 CITNCWFSVLINGHSAGYFKSERGLRQGDSISPMLFILAAEYLSRGIN 624
Score = 37.4 bits (85), Expect(2) = 5e-09
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCLLNMFF 127
+D+++W FL+ VL F F + ++IR C+ N +F
Sbjct: 549 YDRLNWDFLILVLERFGFNDMWIDMIRRCITNCWF 583
>gb|EOY02239.1| Uncharacterized protein TCM_016763 [Theobroma cacao]
Length = 2127
Score = 45.1 bits (105), Expect(2) = 1e-07
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = -3
Query: 131 FFILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFSRGLN 6
F +L+NG G F S G++Q D +SP+LFIL A SRGLN
Sbjct: 1376 FSLLINGSLAGYFKSERGLRQGDSISPMLFILAADYLSRGLN 1417
Score = 36.2 bits (82), Expect(2) = 1e-07
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCLLNMFF 127
+D+++W FL ++ F F +H+ +I++C+ N +F
Sbjct: 1342 YDRLNWDFLYLMMEHFGFNAHWINMIKSCISNCWF 1376
>gb|EOY02242.1| Uncharacterized protein TCM_016767 [Theobroma cacao]
Length = 1707
Score = 45.1 bits (105), Expect(2) = 6e-07
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = -3
Query: 125 ILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFSRGLN 6
+L+NG VG F S G++Q D +SP+LFIL A SRGLN
Sbjct: 1335 LLINGSLVGYFKSERGLRQGDSISPMLFILAADYLSRGLN 1374
Score = 33.9 bits (76), Expect(2) = 6e-07
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCLLN 136
+D+++W FL ++ F F +H+ +I++C+ N
Sbjct: 1299 YDRLNWDFLYLMMEHFGFNAHWINMIKSCISN 1330
>gb|EOY25454.1| Uncharacterized protein TCM_026877 [Theobroma cacao]
Length = 2367
Score = 43.1 bits (100), Expect(2) = 2e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = -3
Query: 131 FFILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFSRGLNS 3
F +L+NG G F G++Q DP+SP LF++ A+ SRGLN+
Sbjct: 1669 FSLLLNGRTEGYFKFERGLRQGDPISPQLFLIAAEYLSRGLNA 1711
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCLLNMFF 127
+D++ W FL+ VL F F + +I+ C+ N +F
Sbjct: 1635 YDRLDWSFLIKVLQHFGFNDQWIGMIQKCISNCWF 1669
>gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao]
Length = 2251
Score = 43.1 bits (100), Expect(2) = 2e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = -3
Query: 131 FFILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFSRGLNS 3
F +L+NG G F S G++Q D +SP LFIL A+ SRGLN+
Sbjct: 1499 FSLLLNGRIEGYFKSERGLRQGDSISPQLFILAAEYLSRGLNA 1541
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCLLNMFF 127
+D++ W FL+ VL F F + +I+ C+ N +F
Sbjct: 1465 YDRLDWSFLIKVLQHFGFNEQWIGMIQKCISNCWF 1499
>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
H; Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 47.8 bits (112), Expect(2) = 3e-06
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = -3
Query: 125 ILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFSRGLN 6
+LVNG VG F GV+Q DPLSPLLF LV +V SR L+
Sbjct: 629 VLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALS 668
Score = 28.9 bits (63), Expect(2) = 3e-06
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELI 154
FD + W FLLAVL F F F I
Sbjct: 593 FDTLDWNFLLAVLQRFGFDEKFVHWI 618
>emb|CAN77417.1| hypothetical protein VITISV_000477 [Vitis vinifera]
Length = 421
Score = 42.0 bits (97), Expect(2) = 3e-06
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -3
Query: 131 FFILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFS 18
F +LVNG G F G++Q DPLSP LF++V + FS
Sbjct: 306 FSVLVNGSPTGFFQGSRGLRQRDPLSPYLFVIVMEAFS 343
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCLLNMFF 127
+D V W FLLAVL F +C I+ CL + F
Sbjct: 272 YDHVDWSFLLAVLGKMGFGGRWCSWIKWCLSTVSF 306
>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 642
Score = 42.0 bits (97), Expect(2) = 6e-06
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = -3
Query: 128 FILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFSRGLN 6
FI +NG G F GV+Q DPLSPLLF +V +V SR ++
Sbjct: 363 FISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSIS 403
Score = 33.5 bits (75), Expect(2) = 6e-06
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCL 142
FD ++W FLL VL F F FC I+ L
Sbjct: 328 FDTLNWDFLLLVLKTFGFNELFCNWIKTIL 357
>ref|XP_003633775.1| PREDICTED: uncharacterized protein LOC100854020 [Vitis vinifera]
Length = 1210
Score = 40.8 bits (94), Expect(2) = 8e-06
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -3
Query: 131 FFILVNG*GVGSFPSGLGVKQSDPLSPLLFILVAKVFS 18
F + VNG +G F G++Q DPLSP LFI+V + FS
Sbjct: 253 FSVSVNGSPMGFFQGSRGLRQGDPLSPYLFIIVMEAFS 290
Score = 34.3 bits (77), Expect(2) = 8e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 231 FDQVSWQFLLAVLSAFDFRSHFCELIRNCLLNMFF 127
+D V W FLLAVL F +C I+ CL + F
Sbjct: 219 YDHVDWSFLLAVLGKMGFGRRWCSWIKWCLSTVSF 253