BLASTX nr result
ID: Catharanthus23_contig00029252
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00029252
(499 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN59997.1| hypothetical protein VITISV_020888 [Vitis vinifera] 91 3e-29
emb|CAN61694.1| hypothetical protein VITISV_026655 [Vitis vinifera] 88 1e-28
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic... 87 7e-27
gb|AAP43918.1| integrase [Gossypium hirsutum] 84 8e-26
gb|ADN34141.1| ty3-gypsy retrotransposon protein [Cucumis melo s... 86 2e-25
gb|AAL59229.1|AF448416_9 gag-pol [Zea mays] 83 3e-25
gb|AAX95140.1| retrotransposon protein, putative, Ty3-gypsy sub-... 85 5e-25
gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group] 83 1e-24
gb|ABA98765.1| retrotransposon protein, putative, Ty3-gypsy subc... 83 1e-24
emb|CAE02926.1| OSJNBb0108J11.19 [Oryza sativa Japonica Group] g... 82 2e-24
emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa Japonica Group] 82 2e-24
gb|AAT77372.1| putative polyprotein [Oryza sativa Japonica Group... 82 2e-24
gb|AAP43917.1| integrase [Gossypium hirsutum] 86 2e-24
emb|CAH66198.1| OSIGBa0148D14.4 [Oryza sativa Indica Group] 82 2e-24
emb|CAE03176.2| OSJNBa0070O11.7 [Oryza sativa Japonica Group] 82 2e-24
gb|ABA95216.1| retrotransposon protein, putative, Ty3-gypsy subc... 81 2e-24
gb|ABA98406.1| retrotransposon protein, putative, Ty3-gypsy subc... 82 3e-24
gb|AAT73689.1| putative polyprotein [Oryza sativa Japonica Group] 82 3e-24
gb|AAV44031.1| putative polyprotein [Oryza sativa Japonica Group... 82 3e-24
gb|AAV32204.1| putative polyprotein [Oryza sativa Japonica Group] 82 3e-24
>emb|CAN59997.1| hypothetical protein VITISV_020888 [Vitis vinifera]
Length = 893
Score = 91.3 bits (225), Expect(3) = 3e-29
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYLY K+E++ DHKSLKY+F+QKDLN RQR WME LE+Y + ++YH KANVVADALSR
Sbjct: 344 HYLYGEKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSR 403
Score = 45.8 bits (107), Expect(3) = 3e-29
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T+H G KMY+DLK+ FW NGMKR+IA
Sbjct: 509 HKAKYTIHPGNTKMYQDLKRQFWCNGMKRDIA 540
Score = 37.4 bits (85), Expect(3) = 3e-29
Identities = 20/75 (26%), Positives = 45/75 (60%)
Frame = -3
Query: 305 YQVLD*HLPYSKILKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET 126
Y +L + +I++A Q ++ + K ++ + + W++ DGS++F +L VP++
Sbjct: 440 YSILARPMVIQRIVEA-QVHDEFLEKVKAQLVAGEIDENWSMYEDGSVWFKGRLCVPKDV 498
Query: 125 *LKHKILEEAHNSKY 81
L++++L +AH +KY
Sbjct: 499 GLRNELLADAHKAKY 513
>emb|CAN61694.1| hypothetical protein VITISV_026655 [Vitis vinifera]
Length = 1313
Score = 87.8 bits (216), Expect(3) = 1e-28
Identities = 40/79 (50%), Positives = 56/79 (70%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYLY K+E++ DHKSLKY+F+QKDLN RQR WM LE+Y + ++YH K N VADALSR
Sbjct: 777 HYLYGEKFEVYSDHKSLKYIFTQKDLNSRQRRWMXTLEDYDFALHYHPGKXNXVADALSR 836
Query: 315 *TKISSFRLTSTLQQDIKS 259
++I ++ + +K+
Sbjct: 837 KSRIXEAQVHDEFLEKVKA 855
Score = 48.9 bits (115), Expect(3) = 1e-28
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T+H G KMY+DLK+ FWW+GMKR+IA
Sbjct: 897 HRAKYTIHPGNTKMYQDLKRQFWWSGMKRDIA 928
Score = 35.4 bits (80), Expect(3) = 1e-28
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = -3
Query: 188 WTLAADGSLYF*NQLHVPEET*LKHKILEEAHNSKY 81
W++ DGS+ F +L VP++ L++++L +AH +KY
Sbjct: 866 WSMYEDGSVRFKGRLCVPKDVELRNELLADAHRAKY 901
>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 86.7 bits (213), Expect(3) = 7e-27
Identities = 38/65 (58%), Positives = 53/65 (81%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYLY K +++ DHKSLKY+F+Q +LNMRQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 1026 HYLYGQKCDVYTDHKSLKYIFTQSELNMRQRRWLELIKDYELEIHYHPGKANVVADALSR 1085
Query: 315 *TKIS 301
++++
Sbjct: 1086 KSQVN 1090
Score = 51.2 bits (121), Expect(3) = 7e-27
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLKK FWW GMKREIA
Sbjct: 1187 HETAYSIHPGSEKMYQDLKKKFWWYGMKREIA 1218
Score = 28.5 bits (62), Expect(3) = 7e-27
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
+K QKN+ SE + + DF A+G ++F ++L VP ++ IL+EAH +
Sbjct: 1131 IKEAQKNDEKISEIRRLILDGRGKDFRE-DAEGVVWFKDRLCVPNVQSIRELILKEAHET 1189
Query: 86 KY 81
Y
Sbjct: 1190 AY 1191
>gb|AAP43918.1| integrase [Gossypium hirsutum]
Length = 350
Score = 84.3 bits (207), Expect(3) = 8e-26
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYLY K ++ DHKSLKYL SQKDLN+RQR W+ELL++Y I+YH K NVV DALSR
Sbjct: 40 HYLYGEKCRVYTDHKSLKYLMSQKDLNLRQRRWLELLKDYELVIDYHPGKTNVVVDALSR 99
Score = 45.8 bits (107), Expect(3) = 8e-26
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H + +H G KMY DLKK +WW+GMKR+I+
Sbjct: 190 HNSCLAVHPGSTKMYNDLKKMYWWSGMKRDIS 221
Score = 32.7 bits (73), Expect(3) = 8e-26
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = -3
Query: 254 QKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
QKN+ + + + DF + +DG L F NQ+ VP+ L IL EAHNS
Sbjct: 138 QKNDQDLLAKRKQCEADMGSDF-RIGSDGCLMFKNQICVPKNDELIQNILHEAHNS 192
>gb|ADN34141.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
Length = 1359
Score = 85.5 bits (210), Expect(3) = 2e-25
Identities = 44/77 (57%), Positives = 56/77 (72%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYLY K +IF HK+LKY F+QK+LNMRQR W+EL+++Y I YH KANVVADALSR
Sbjct: 765 HYLYGQKIQIFTYHKNLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR 824
Query: 315 *TKISSFRLTSTLQQDI 265
K++ + TL+Q I
Sbjct: 825 --KLAQLTVQPTLRQKI 839
Score = 42.4 bits (98), Expect(3) = 2e-25
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H++ +MH G KMY+ LK+ +WW+ +KRE+A
Sbjct: 895 HSSPFSMHSGSTKMYQHLKRVYWWSNIKREVA 926
Score = 33.5 bits (75), Expect(3) = 2e-25
Identities = 13/36 (36%), Positives = 27/36 (75%)
Frame = -3
Query: 188 WTLAADGSLYF*NQLHVPEET*LKHKILEEAHNSKY 81
+++++DG L F +L+VP ++ +K ++L EAH+S +
Sbjct: 864 FSISSDGGLLFERRLYVPSDSAVKTELLSEAHSSPF 899
>gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
Length = 1470
Score = 82.8 bits (203), Expect(3) = 3e-25
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HY+ K +IF DHKSLKY+F+QK+LN+RQR W+EL+++Y I YH KANVVADALSR
Sbjct: 892 HYMIGNKCKIFTDHKSLKYIFTQKELNLRQRRWLELIKDYDLEIQYHPGKANVVADALSR 951
Query: 315 *TKISSFRLTSTLQQDI 265
++++ T + Q++
Sbjct: 952 KGQVNNI-TTHLMSQEL 967
Score = 44.3 bits (103), Expect(3) = 3e-25
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H + ++H G KMY+DLK+ +WW G+KR++A
Sbjct: 1053 HDSAYSIHPGSTKMYQDLKEKYWWYGLKRDVA 1084
Score = 33.9 bits (76), Expect(3) = 3e-25
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++ Q+++ E K +G+ DF T G+++F ++ VPE L+ IL EAH+S
Sbjct: 997 IRKGQESDEKIKEIKALIGLGKAPDF-TEDEQGTIWFKKRICVPEIEHLRQLILREAHDS 1055
Query: 86 KY 81
Y
Sbjct: 1056 AY 1057
>gb|AAX95140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77549634|gb|ABA92431.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1313
Score = 85.1 bits (209), Expect(3) = 5e-25
Identities = 42/81 (51%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YHL KANVVADALSR
Sbjct: 796 HYLIGNRREVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHLGKANVVADALSR 855
Query: 315 *TKISSF---RLTSTLQQDIK 262
+ ++ + LQQD++
Sbjct: 856 KSYCNALCTEDMCGKLQQDLE 876
Score = 45.4 bits (106), Expect(3) = 5e-25
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 957 HQTQYSIHPGSTKMYQDLKEKFWWASMRREIA 988
Score = 29.6 bits (65), Expect(3) = 5e-25
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + DF G+++ +L VP++ LK IL EAH +
Sbjct: 901 VRAAQVNDPEIAELKKNTRVGKARDFHE-DEHGTIWLGERLCVPDDKELKDLILTEAHQT 959
Query: 86 KY 81
+Y
Sbjct: 960 QY 961
>gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1638
Score = 82.8 bits (203), Expect(3) = 1e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 1076 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVADALSR 1135
Query: 315 *TKISSF---RLTSTLQQDIK 262
+ ++ + LQQD++
Sbjct: 1136 KSYCNALCIEGMCGELQQDLE 1156
Score = 46.6 bits (109), Expect(3) = 1e-24
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMYKDLK+ FWW M+REIA
Sbjct: 1237 HQTQYSIHPGSTKMYKDLKEKFWWVSMRREIA 1268
Score = 29.3 bits (64), Expect(3) = 1e-24
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF G+++ +L VP++ LK IL EAH +
Sbjct: 1181 VRAAQVNDPKIAELKKNMRVGKARDFLE-DEHGTIWMGERLCVPDDKELKDLILIEAHQT 1239
Query: 86 KY 81
+Y
Sbjct: 1240 QY 1241
>gb|ABA98765.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1311
Score = 83.2 bits (204), Expect(3) = 1e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 805 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRSWLELIKDYDMGIHYHPGKANVVADALSR 864
Query: 315 *TKISSF---RLTSTLQQDIK 262
+ ++ + LQQD++
Sbjct: 865 KSYCNALCTEGMCGKLQQDLE 885
Score = 45.4 bits (106), Expect(3) = 1e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 966 HQTQYSIHPGSTKMYQDLKEKFWWASMRREIA 997
Score = 30.0 bits (66), Expect(3) = 1e-24
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF G+++ +L VP++ LK IL EAH +
Sbjct: 910 VRAAQVNDPEIAELKKNMRVGKARDFHE-DEHGTIWLGERLCVPDDKELKDLILTEAHQT 968
Query: 86 KY 81
+Y
Sbjct: 969 QY 970
>emb|CAE02926.1| OSJNBb0108J11.19 [Oryza sativa Japonica Group]
gi|32489278|emb|CAE04619.1| OSJNBa0028I23.1 [Oryza sativa
Japonica Group]
Length = 1516
Score = 82.4 bits (202), Expect(3) = 2e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 930 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 989
Query: 315 *TKISSF---RLTSTLQQDIK 262
+ ++ + LQQD++
Sbjct: 990 KSYCNALCTEDMCGKLQQDLE 1010
Score = 45.1 bits (105), Expect(3) = 2e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1091 HQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA 1122
Score = 30.8 bits (68), Expect(3) = 2e-24
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF +G+++ +L VP++ LK IL EAH +
Sbjct: 1035 VRAAQVNDPEIAELKKNMRVGKARDFHE-DENGTIWLGERLCVPDDKELKDLILTEAHQT 1093
Query: 86 KY 81
+Y
Sbjct: 1094 QY 1095
>emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa Japonica Group]
Length = 1516
Score = 82.0 bits (201), Expect(3) = 2e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 930 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 989
Query: 315 *TKISSFR---LTSTLQQDIK 262
+ ++ + LQQD++
Sbjct: 990 KSYCNAVYTEVMCDKLQQDLE 1010
Score = 45.4 bits (106), Expect(3) = 2e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1091 HQTQYSIHPGSTKMYQDLKEKFWWASMRREIA 1122
Score = 30.8 bits (68), Expect(3) = 2e-24
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF +G+++ +L VP++ LK IL EAH +
Sbjct: 1035 VRAAQVNDPEIAELKKNMRVGKARDFHE-DENGTIWLGERLCVPDDKELKDLILTEAHQT 1093
Query: 86 KY 81
+Y
Sbjct: 1094 QY 1095
>gb|AAT77372.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51854392|gb|AAU10772.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1501
Score = 82.4 bits (202), Expect(3) = 2e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 915 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 974
Query: 315 *T---KISSFRLTSTLQQDIK 262
+ + + + LQQD++
Sbjct: 975 KSYCNAVCTEGMCDKLQQDLE 995
Score = 45.1 bits (105), Expect(3) = 2e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1076 HQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA 1107
Score = 30.8 bits (68), Expect(3) = 2e-24
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF +G+++ +L VP++ LK IL EAH +
Sbjct: 1020 VRAAQVNDPEIAELKKNMRVGKARDFHE-DENGTIWLGERLCVPDDKELKDLILTEAHQT 1078
Query: 86 KY 81
+Y
Sbjct: 1079 QY 1080
>gb|AAP43917.1| integrase [Gossypium hirsutum]
Length = 355
Score = 86.3 bits (212), Expect(3) = 2e-24
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYLY K ++ DHKSLKYL SQKDLN+RQR W+ELL++Y I+YH KANVVADAL+R
Sbjct: 45 HYLYGEKCRVYTDHKSLKYLMSQKDLNLRQRRWLELLKDYELVIDYHPGKANVVADALNR 104
Score = 42.0 bits (97), Expect(3) = 2e-24
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREI 5
H +H G KMY DLKK +WW+G KR+I
Sbjct: 195 HNGCLAVHPGSTKMYNDLKKMYWWSGKKRDI 225
Score = 30.0 bits (66), Expect(3) = 2e-24
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -3
Query: 254 QKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHN 90
QKN+ + + DF + ++G L F N++ VP+ L KIL EAHN
Sbjct: 143 QKNDQNLLAKRKQCEADTRSDF-RIGSNGCLMFKNRICVPKNDELIQKILHEAHN 196
>emb|CAH66198.1| OSIGBa0148D14.4 [Oryza sativa Indica Group]
Length = 1516
Score = 82.0 bits (201), Expect(3) = 2e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 930 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 989
Query: 315 *T---KISSFRLTSTLQQDIK 262
+ + + + LQQD++
Sbjct: 990 KSYCNAVYTEGMCDKLQQDLE 1010
Score = 45.1 bits (105), Expect(3) = 2e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1091 HQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA 1122
Score = 30.8 bits (68), Expect(3) = 2e-24
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF +G+++ +L VP++ LK IL EAH +
Sbjct: 1035 VRAAQVNDPEIAELKKNMRVGKARDFHE-DENGTIWLGERLCVPDDKELKDLILTEAHQT 1093
Query: 86 KY 81
+Y
Sbjct: 1094 QY 1095
>emb|CAE03176.2| OSJNBa0070O11.7 [Oryza sativa Japonica Group]
Length = 1501
Score = 82.4 bits (202), Expect(3) = 2e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 915 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 974
Query: 315 *T---KISSFRLTSTLQQDIK 262
+ + + + LQQD++
Sbjct: 975 KSYCNAVCTEGMCDKLQQDLE 995
Score = 45.4 bits (106), Expect(3) = 2e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1076 HQTQYSIHPGSTKMYQDLKEKFWWASMRREIA 1107
Score = 30.0 bits (66), Expect(3) = 2e-24
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF G+++ +L VP++ LK IL EAH +
Sbjct: 1020 VRAAQVNDPEIAELKKNMRVGKARDFHE-DEHGTIWLGERLCVPDDKELKDLILTEAHQT 1078
Query: 86 KY 81
+Y
Sbjct: 1079 QY 1080
>gb|ABA95216.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 522
Score = 80.9 bits (198), Expect(3) = 2e-24
Identities = 38/69 (55%), Positives = 50/69 (72%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL +I+ DHKSLKY+F+Q DLNMRQR W+EL ++Y ++YH KANVVADALSR
Sbjct: 230 HYLIGNHCDIYTDHKSLKYIFTQSDLNMRQRRWLELFKDYDLEVHYHPGKANVVADALSR 289
Query: 315 *TKISSFRL 289
+ + R+
Sbjct: 290 KSHCNHLRM 298
Score = 42.7 bits (99), Expect(3) = 2e-24
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H + ++H G KMY+DLK+ +WW MKR++A
Sbjct: 391 HESAYSLHPGSMKMYQDLKEGYWWPNMKRDVA 422
Score = 34.3 bits (77), Expect(3) = 2e-24
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++ QK+N E K R+ +F T D L++ +++VPE+ L+ IL+EAH S
Sbjct: 335 IEEAQKDNEEIQEVKERLAAGFAKEFSTDEKD-VLWYKKRIYVPEKGGLRGLILKEAHES 393
Query: 86 KY 81
Y
Sbjct: 394 AY 395
>gb|ABA98406.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1611
Score = 82.4 bits (202), Expect(3) = 3e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 1025 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 1084
Query: 315 *T---KISSFRLTSTLQQDIK 262
+ + + + LQQD++
Sbjct: 1085 KSYCNAVCTEGMCDKLQQDLE 1105
Score = 45.1 bits (105), Expect(3) = 3e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1186 HQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA 1217
Score = 30.0 bits (66), Expect(3) = 3e-24
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF G+++ +L VP++ LK IL EAH +
Sbjct: 1130 VRAAQVNDPEIAELKKNMRVGKARDFHE-DEHGTIWLGERLCVPDDKELKDLILTEAHQT 1188
Query: 86 KY 81
+Y
Sbjct: 1189 QY 1190
>gb|AAT73689.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1516
Score = 82.4 bits (202), Expect(3) = 3e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 930 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 989
Query: 315 *T---KISSFRLTSTLQQDIK 262
+ + + + LQQD++
Sbjct: 990 KSYCNAVCTEGMCDKLQQDLE 1010
Score = 45.1 bits (105), Expect(3) = 3e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1091 HQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA 1122
Score = 30.0 bits (66), Expect(3) = 3e-24
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF G+++ +L VP++ LK IL EAH +
Sbjct: 1035 VRAAQVNDPEIAELKKNMRVGKARDFHE-DEHGTIWLGERLCVPDDKELKDLILTEAHQT 1093
Query: 86 KY 81
+Y
Sbjct: 1094 QY 1095
>gb|AAV44031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55733814|gb|AAV59321.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1505
Score = 82.4 bits (202), Expect(3) = 3e-24
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 919 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSR 978
Query: 315 *T---KISSFRLTSTLQQDIK 262
+ + + + LQQD++
Sbjct: 979 KSYCNAVCTEGMCDKLQQDLE 999
Score = 45.1 bits (105), Expect(3) = 3e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 1080 HQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA 1111
Score = 30.0 bits (66), Expect(3) = 3e-24
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF G+++ +L VP++ LK IL EAH +
Sbjct: 1024 VRAAQVNDPEIAELKKNMRVGKARDFHE-DEHGTIWLGERLCVPDDKELKDLILTEAHQT 1082
Query: 86 KY 81
+Y
Sbjct: 1083 QY 1084
>gb|AAV32204.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1142
Score = 81.6 bits (200), Expect(3) = 3e-24
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = -2
Query: 495 HYLYRAKYEIFIDHKSLKYLFSQKDLNMRQRGWMELLEEYRYPINYHL*KANVVADALSR 316
HYL + E++ DHKSLKY+F+Q DLN+RQR W+EL+++Y I+YH KANVVADALSR
Sbjct: 709 HYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVADALSR 768
Score = 45.1 bits (105), Expect(3) = 3e-24
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 97 HTTVSTMHLGENKMYKDLKKNFWWNGMKREIA 2
H T ++H G KMY+DLK+ FWW M+REIA
Sbjct: 849 HQTQYSIHPGSTKMYQDLKEKFWWVSMRREIA 880
Score = 30.8 bits (68), Expect(3) = 3e-24
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -3
Query: 266 LKAPQKNNMGFSEFKTRVGIKILVDFWTLAADGSLYF*NQLHVPEET*LKHKILEEAHNS 87
++A Q N+ +E K + + DF G+++ +L VP++ LK+ IL EAH +
Sbjct: 793 VRAAQVNDPEIAELKKNMRVGKARDFLE-DEHGTIWLGERLCVPDDKELKNLILTEAHQT 851
Query: 86 KY 81
+Y
Sbjct: 852 QY 853