BLASTX nr result
ID: Catharanthus23_contig00029140
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00029140
(801 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit... 103 7e-20
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 102 1e-19
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 102 1e-19
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [... 100 8e-19
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu... 97 5e-18
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr... 92 2e-16
ref|XP_006487001.1| PREDICTED: RNA pseudouridine synthase 4, mit... 92 3e-16
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit... 92 3e-16
ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mit... 90 1e-15
tpg|DAA60657.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea m... 89 1e-15
tpg|DAA60656.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea m... 89 1e-15
gb|ACR37582.1| unknown [Zea mays] 89 1e-15
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob... 89 2e-15
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian... 88 3e-15
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi... 88 3e-15
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis] 87 7e-15
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps... 86 1e-14
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A... 84 7e-14
ref|XP_004956276.1| PREDICTED: RNA pseudouridine synthase 4, mit... 84 7e-14
ref|XP_004954753.1| PREDICTED: RNA pseudouridine synthase 4, mit... 84 7e-14
>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
[Solanum tuberosum]
Length = 467
Score = 103 bits (257), Expect = 7e-20
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +2
Query: 5 KLDPFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPL 184
K DPF L L +GSISDKQP+LHLHCKEM+LP+IS+A QRA+ +D D+ D+ESIK APL
Sbjct: 395 KPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDTDLVDVESIKLVAPL 454
Query: 185 PSHMQKSWDLLIS 223
P HMQKSWD L S
Sbjct: 455 PFHMQKSWDCLSS 467
>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
lycopersicum]
Length = 467
Score = 102 bits (255), Expect = 1e-19
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +2
Query: 5 KLDPFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPL 184
K DPF L L +GSISDKQP+LHLHCKEM+LP+IS+A QRA+ +D D+ D+ESIK APL
Sbjct: 395 KPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDADLVDVESIKLVAPL 454
Query: 185 PSHMQKSWDLL 217
P HMQKSWD L
Sbjct: 455 PFHMQKSWDCL 465
>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
product [Vitis vinifera]
Length = 476
Score = 102 bits (255), Expect = 1e-19
Identities = 45/73 (61%), Positives = 60/73 (82%)
Frame = +2
Query: 5 KLDPFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPL 184
K PFGLDL+SGSI DKQP+LHLHCK+M+LP++S+A Q + + D+ +LES++F APL
Sbjct: 404 KTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPL 463
Query: 185 PSHMQKSWDLLIS 223
PSHMQ+SWD+L S
Sbjct: 464 PSHMQRSWDILNS 476
>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 536
Score = 100 bits (248), Expect = 8e-19
Identities = 43/73 (58%), Positives = 61/73 (83%)
Frame = +2
Query: 5 KLDPFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPL 184
K+ PFG+DL+SGSIS+K P LHLHCK+M+LPD+S A + ++ +++D DL+SI+ DAPL
Sbjct: 464 KILPFGIDLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPL 523
Query: 185 PSHMQKSWDLLIS 223
PS+MQ+SWD+L S
Sbjct: 524 PSYMQRSWDILNS 536
>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
gi|550331407|gb|EEE87831.2| hypothetical protein
POPTR_0009s09860g [Populus trichocarpa]
Length = 471
Score = 97.4 bits (241), Expect = 5e-18
Identities = 43/71 (60%), Positives = 55/71 (77%)
Frame = +2
Query: 5 KLDPFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPL 184
K+ PF LDL SGSIS+K P LHLHCK+M+LPD+S A Q + +D+D L S+KFDAPL
Sbjct: 399 KILPFALDLDSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPL 458
Query: 185 PSHMQKSWDLL 217
P +M+KSWD+L
Sbjct: 459 PPYMKKSWDIL 469
>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
gi|557524859|gb|ESR36165.1| hypothetical protein
CICLE_v10028283mg [Citrus clementina]
Length = 494
Score = 92.4 bits (228), Expect = 2e-16
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +2
Query: 17 FGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSHM 196
FGLDL+SGSI +KQP LHLHCKEM LP++S A Q+ + + D+ LES+K APLPSHM
Sbjct: 426 FGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHM 485
Query: 197 QKSWDLLIS 223
Q+SWD+L S
Sbjct: 486 QRSWDVLNS 494
>ref|XP_006487001.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
X3 [Citrus sinensis]
Length = 275
Score = 91.7 bits (226), Expect = 3e-16
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = +2
Query: 17 FGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSHM 196
FGLDL+SGSI +KQP LHLHCKEM LP++S A Q+ + + D+ LE++K APLPSHM
Sbjct: 207 FGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHM 266
Query: 197 QKSWDLLIS 223
Q+SWD+L S
Sbjct: 267 QRSWDVLNS 275
>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
PREDICTED: RNA pseudouridine synthase 4,
mitochondrial-like isoform X2 [Citrus sinensis]
Length = 362
Score = 91.7 bits (226), Expect = 3e-16
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = +2
Query: 17 FGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSHM 196
FGLDL+SGSI +KQP LHLHCKEM LP++S A Q+ + + D+ LE++K APLPSHM
Sbjct: 294 FGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHM 353
Query: 197 QKSWDLLIS 223
Q+SWD+L S
Sbjct: 354 QRSWDVLNS 362
>ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Oryza
brachyantha]
Length = 447
Score = 89.7 bits (221), Expect = 1e-15
Identities = 41/70 (58%), Positives = 52/70 (74%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSH 193
PFGL + GSI+++QP LHLHCK+M+LPDISVA R +S D D DLE + F APLP H
Sbjct: 375 PFGLVVGGGSIAEEQPQLHLHCKQMVLPDISVAVHRLQSDVDPDFSDLEKLNFVAPLPLH 434
Query: 194 MQKSWDLLIS 223
M+ SW++L S
Sbjct: 435 MRLSWEILKS 444
>tpg|DAA60657.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 549
Score = 89.4 bits (220), Expect = 1e-15
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAK-SPTDFDIEDLESIKFDAPLPS 190
PFGL L GS++++QP LHLHCK+MILPDIS A Q+ + S D D DLE + F APLP
Sbjct: 476 PFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPL 535
Query: 191 HMQKSWDLLIS 223
HMQ SW +L+S
Sbjct: 536 HMQLSWKILLS 546
>tpg|DAA60656.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 503
Score = 89.4 bits (220), Expect = 1e-15
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAK-SPTDFDIEDLESIKFDAPLPS 190
PFGL L GS++++QP LHLHCK+MILPDIS A Q+ + S D D DLE + F APLP
Sbjct: 430 PFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPL 489
Query: 191 HMQKSWDLLIS 223
HMQ SW +L+S
Sbjct: 490 HMQLSWKILLS 500
>gb|ACR37582.1| unknown [Zea mays]
Length = 272
Score = 89.4 bits (220), Expect = 1e-15
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAK-SPTDFDIEDLESIKFDAPLPS 190
PFGL L GS++++QP LHLHCK+MILPDIS A Q+ + S D D DLE + F APLP
Sbjct: 199 PFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPL 258
Query: 191 HMQKSWDLLIS 223
HMQ SW +L+S
Sbjct: 259 HMQLSWKILLS 269
>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
Length = 477
Score = 88.6 bits (218), Expect = 2e-15
Identities = 40/70 (57%), Positives = 54/70 (77%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSH 193
PFGL++ SGSIS K+P LHLHC+EMI P++S A Q + TD D+ L+S++ APLPS+
Sbjct: 408 PFGLNMDSGSISAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSY 467
Query: 194 MQKSWDLLIS 223
MQKSWD++ S
Sbjct: 468 MQKSWDIMNS 477
>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
pseudouridine synthase 4, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 4; AltName:
Full=RNA-uridine isomerase 4; Flags: Precursor
gi|11994467|dbj|BAB02469.1| unnamed protein product
[Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
hypothetical protein [Arabidopsis thaliana]
gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
synthase 4 [Arabidopsis thaliana]
Length = 477
Score = 88.2 bits (217), Expect = 3e-15
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSH 193
PFGLDL G +S KQP+LHLH K++ LP+IS ++ + +D DI DL+S+KFDAPLPSH
Sbjct: 400 PFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSH 459
Query: 194 MQKSWDLLIS 223
MQ S++LL S
Sbjct: 460 MQLSFNLLKS 469
>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 88.2 bits (217), Expect = 3e-15
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSH 193
PFGLDL G +S KQP+LHLH K++ LP+IS ++ + +D DI DL+S+KFDAPLPSH
Sbjct: 400 PFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSH 459
Query: 194 MQKSWDLLIS 223
MQ S++LL S
Sbjct: 460 MQLSFNLLKS 469
>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
Length = 470
Score = 87.0 bits (214), Expect = 7e-15
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSH 193
PFGL++ +GSIS+K P LHLHCK+M+LP+IS Q + +D+++ LE +K DAPLPS+
Sbjct: 401 PFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAPLPSY 460
Query: 194 MQKSWDL 214
MQ+SW L
Sbjct: 461 MQRSWHL 467
>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
gi|482566291|gb|EOA30480.1| hypothetical protein
CARUB_v10013603mg [Capsella rubella]
Length = 476
Score = 86.3 bits (212), Expect = 1e-14
Identities = 39/70 (55%), Positives = 54/70 (77%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSH 193
PFGLDL G +S KQP+LHLH K++ LP+IS ++ + +D DI D++S+KFDAPLP+H
Sbjct: 399 PFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDIDSLKFDAPLPTH 458
Query: 194 MQKSWDLLIS 223
MQ S++LL S
Sbjct: 459 MQLSFNLLKS 468
>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
gi|548850328|gb|ERN08832.1| hypothetical protein
AMTR_s00015p00025410 [Amborella trichopoda]
Length = 457
Score = 83.6 bits (205), Expect = 7e-14
Identities = 37/70 (52%), Positives = 51/70 (72%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSH 193
PFGLDL+ GS+SDK+P LHLHC++M LP++S+A Q + D+ LE + APLP H
Sbjct: 385 PFGLDLEGGSVSDKKPRLHLHCRQMTLPNMSLAFQHLHEQSVDDLSKLEKLDLVAPLPLH 444
Query: 194 MQKSWDLLIS 223
M++SWD+L S
Sbjct: 445 MRRSWDILNS 454
>ref|XP_004956276.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
[Setaria italica]
Length = 465
Score = 83.6 bits (205), Expect = 7e-14
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAK-SPTDFDIEDLESIKFDAPLPS 190
PFGL L GS+++ QP LHLHCK+MILPDIS A QR + S ++ + DLE + F APLP
Sbjct: 392 PFGLALGGGSVAEDQPQLHLHCKQMILPDISAAMQRLQSSESNHNFSDLEKLSFVAPLPL 451
Query: 191 HMQKSWDLLIS 223
HM+ SW++L S
Sbjct: 452 HMRLSWEILKS 462
>ref|XP_004954753.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like,
partial [Setaria italica]
Length = 509
Score = 83.6 bits (205), Expect = 7e-14
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 14 PFGLDLQSGSISDKQPYLHLHCKEMILPDISVAAQRAK-SPTDFDIEDLESIKFDAPLPS 190
PFGL L GS+++ QP LHLHCK+MILPDIS A QR + S ++ + DLE + F APLP
Sbjct: 436 PFGLALGGGSVAEDQPQLHLHCKQMILPDISAAMQRLQSSESNHNFSDLEKLSFVAPLPL 495
Query: 191 HMQKSWDLLIS 223
HM+ SW++L S
Sbjct: 496 HMRLSWEILKS 506