BLASTX nr result

ID: Catharanthus23_contig00029079 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00029079
         (337 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003611775.1| hypothetical protein MTR_5g017710 [Medicago ...    57   3e-06
ref|XP_003636987.1| hypothetical protein MTR_066s1016 [Medicago ...    56   6e-06
ref|XP_006425856.1| hypothetical protein CICLE_v10027106mg [Citr...    55   1e-05

>ref|XP_003611775.1| hypothetical protein MTR_5g017710 [Medicago truncatula]
           gi|355513110|gb|AES94733.1| hypothetical protein
           MTR_5g017710 [Medicago truncatula]
          Length = 85

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
 Frame = +2

Query: 62  MANISCKCLFMIFLLILVSIEQVPISVEGRNLRGEKVKVRILGQETRNRA--------EK 217
           MA+ +  CL  IF+L+L+S E   +S+EGR+LR      +    ET  R+        + 
Sbjct: 1   MAHFTRSCL--IFVLLLISCEL--LSIEGRSLRKSIGSPKAASVETMTRSVVLSPRQLQN 56

Query: 218 SRRVLQGEVDSFRPTNPGRSPGIGH 292
           + R L+G V++FRPT PG SPG+GH
Sbjct: 57  NGRNLEGSVEAFRPTTPGHSPGVGH 81


>ref|XP_003636987.1| hypothetical protein MTR_066s1016 [Medicago truncatula]
           gi|355502922|gb|AES84125.1| hypothetical protein
           MTR_066s1016 [Medicago truncatula]
           gi|388514207|gb|AFK45165.1| unknown [Medicago
           truncatula]
          Length = 82

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
 Frame = +2

Query: 62  MANISCKCLFMIFLLILVSIEQVPISVEGRNLRGEKVKVRILGQETRNRAE---KSRRVL 232
           MA+++  CLF  ++L+ +S E +  + EGR+LR       I   +  + ++   +S R L
Sbjct: 1   MAHLARICLF--YVLLFLSHELLLTTTEGRSLRQSIQPPNIASTKMMSTSQLYHRSNRSL 58

Query: 233 QGEVDSFRPTNPGRSPGIGH 292
           +G+V++FRPT PG SPGIGH
Sbjct: 59  EGDVEAFRPTTPGHSPGIGH 78


>ref|XP_006425856.1| hypothetical protein CICLE_v10027106mg [Citrus clementina]
           gi|557527846|gb|ESR39096.1| hypothetical protein
           CICLE_v10027106mg [Citrus clementina]
          Length = 93

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
 Frame = +2

Query: 62  MANISCKCLFMIFLLILVSIEQVPISVEGRNLRGEKV--------------KVRILGQET 199
           MAN+SC CLF  F+L++ S E     VEGRNL+  K               K + + ++T
Sbjct: 1   MANVSCTCLF--FILMIFSHELC--DVEGRNLKISKSLKCAKCLLSPDGQSKSKPIARDT 56

Query: 200 RNR------AEKSRRVLQGEVDSFRPTNPGRSPGIGH 292
            N            +  +G VD+FRPT PG SPG+GH
Sbjct: 57  NNHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93


Top