BLASTX nr result
ID: Catharanthus23_contig00028236
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00028236
(334 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004240634.1| PREDICTED: pentatricopeptide repeat-containi... 86 4e-15
ref|XP_006364563.1| PREDICTED: pentatricopeptide repeat-containi... 85 1e-14
gb|EXB82495.1| hypothetical protein L484_027670 [Morus notabilis] 80 3e-13
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,... 80 3e-13
gb|EMJ28460.1| hypothetical protein PRUPE_ppa017811mg [Prunus pe... 80 4e-13
ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi... 79 8e-13
ref|XP_006483972.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
ref|XP_006438222.1| hypothetical protein CICLE_v10031251mg [Citr... 75 7e-12
ref|XP_002312667.1| pentatricopeptide repeat-containing family p... 75 1e-11
gb|EOY00680.1| Pentatricopeptide repeat superfamily protein isof... 74 2e-11
ref|XP_004310156.1| PREDICTED: pentatricopeptide repeat-containi... 74 3e-11
ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containi... 74 3e-11
ref|XP_003531325.2| PREDICTED: pentatricopeptide repeat-containi... 70 4e-10
gb|ESW31683.1| hypothetical protein PHAVU_002G258900g [Phaseolus... 69 5e-10
ref|NP_172763.1| pentatricopeptide repeat-containing protein [Ar... 65 1e-08
ref|XP_002889980.1| pentatricopeptide repeat-containing protein ... 64 2e-08
ref|XP_006304861.1| hypothetical protein CARUB_v10012598mg [Caps... 63 4e-08
ref|XP_006417164.1| hypothetical protein EUTSA_v10007381mg [Eutr... 62 6e-08
ref|XP_004504137.1| PREDICTED: pentatricopeptide repeat-containi... 61 2e-07
ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [S... 56 4e-06
>ref|XP_004240634.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Solanum lycopersicum]
Length = 511
Score = 86.3 bits (212), Expect = 4e-15
Identities = 40/52 (76%), Positives = 45/52 (86%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MYKALGKHRLIYR I+ V+TG + +A+QVFDEMTQSDCRVFSIDYNR IG
Sbjct: 1 MYKALGKHRLIYRTRISSYVKTGLVNEALQVFDEMTQSDCRVFSIDYNRIIG 52
>ref|XP_006364563.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like isoform X1 [Solanum tuberosum]
Length = 511
Score = 84.7 bits (208), Expect = 1e-14
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MYKALGKHRLIYR I+ V+TG + +A+QVFD+MTQSDCRVFSIDYNR IG
Sbjct: 1 MYKALGKHRLIYRTRISNYVKTGLVNEALQVFDKMTQSDCRVFSIDYNRIIG 52
>gb|EXB82495.1| hypothetical protein L484_027670 [Morus notabilis]
Length = 513
Score = 80.1 bits (196), Expect = 3e-13
Identities = 35/52 (67%), Positives = 44/52 (84%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
M +LG HRL+YR+ IA CV+TG I+ A+Q+FDEM+ SDCRVFS+DYNRFIG
Sbjct: 1 MIHSLGAHRLLYRSRIAYCVKTGLIDHAVQLFDEMSHSDCRVFSVDYNRFIG 52
>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 554
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY++LG HRLIYR+ IA V+ G I++A+QVFDEM+QS+CRVFSIDYNRFIG
Sbjct: 1 MYQSLGAHRLIYRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIG 52
>gb|EMJ28460.1| hypothetical protein PRUPE_ppa017811mg [Prunus persica]
Length = 541
Score = 79.7 bits (195), Expect = 4e-13
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY++LG +RLI+R+ I V+TG I+QA+QVFDEMT+SDCRVFSIDYNRFIG
Sbjct: 1 MYRSLGVNRLIFRSRIVYYVKTGLIDQALQVFDEMTRSDCRVFSIDYNRFIG 52
>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product
[Vitis vinifera]
Length = 519
Score = 78.6 bits (192), Expect = 8e-13
Identities = 35/52 (67%), Positives = 45/52 (86%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY++LG+HRL YRA I+ V+ G I+QA++ FDEMT+S+CRVFSIDYNRFIG
Sbjct: 1 MYRSLGRHRLAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIG 52
>ref|XP_006483972.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like isoform X1 [Citrus sinensis]
gi|568860947|ref|XP_006483973.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like isoform X2 [Citrus sinensis]
Length = 517
Score = 75.5 bits (184), Expect = 7e-12
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
M + LG RLIYRA I+ V+ G I+QA+ VFDEMTQS+CRVFSIDYNRFIG
Sbjct: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG 52
>ref|XP_006438222.1| hypothetical protein CICLE_v10031251mg [Citrus clementina]
gi|557540418|gb|ESR51462.1| hypothetical protein
CICLE_v10031251mg [Citrus clementina]
Length = 517
Score = 75.5 bits (184), Expect = 7e-12
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
M + LG RLIYRA I+ V+ G I+QA+ VFDEMTQS+CRVFSIDYNRFIG
Sbjct: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG 52
>ref|XP_002312667.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222852487|gb|EEE90034.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 512
Score = 74.7 bits (182), Expect = 1e-11
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY+ LG HRLIYR IA V+ G I+ A++VFDEMT S+CRVF IDYNRFIG
Sbjct: 1 MYQPLGVHRLIYRTRIASYVKAGLIDYAVKVFDEMTLSECRVFGIDYNRFIG 52
>gb|EOY00680.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
cacao] gi|508708784|gb|EOY00681.1| Pentatricopeptide
repeat superfamily protein isoform 1 [Theobroma cacao]
gi|508708785|gb|EOY00682.1| Pentatricopeptide repeat
superfamily protein isoform 1 [Theobroma cacao]
gi|508708786|gb|EOY00683.1| Pentatricopeptide repeat
superfamily protein isoform 1 [Theobroma cacao]
Length = 516
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/52 (67%), Positives = 41/52 (78%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY ALG RLIYRA I++ V+ G QAI +FD+MTQSDCRVF +DYNRFIG
Sbjct: 1 MYHALGAPRLIYRAHISRLVKNGLTNQAISMFDQMTQSDCRVFGLDYNRFIG 52
>ref|XP_004310156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 516
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +1
Query: 181 YKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
+ LG HRLIYR+ + V+TG I+ A+ VFDEMTQS+CRVFS+DYNRFIG
Sbjct: 3 HTTLGAHRLIYRSRMTHYVKTGLIDHALHVFDEMTQSNCRVFSVDYNRFIG 53
>ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
gi|449494962|ref|XP_004159696.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
Length = 514
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY LG +RL++RA I +CV+ G I++AI++FDEMTQSDC V S DYNRFIG
Sbjct: 1 MYHRLGANRLVFRASITKCVKVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIG 52
>ref|XP_003531325.2| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like isoform X1 [Glycine max]
gi|571471241|ref|XP_006585252.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like isoform X2 [Glycine max]
Length = 521
Score = 69.7 bits (169), Expect = 4e-10
Identities = 32/53 (60%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Frame = +1
Query: 178 MYKA-LGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY++ +G HRL YR+ I++ V+ G I QAI +FD+MT+S+CRVFS+DYNRFIG
Sbjct: 1 MYQSSIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIG 53
>gb|ESW31683.1| hypothetical protein PHAVU_002G258900g [Phaseolus vulgaris]
Length = 518
Score = 69.3 bits (168), Expect = 5e-10
Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Frame = +1
Query: 178 MYKA-LGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY++ +G HRL YR+ I++ V+ G I AI +FD+MTQS+CRVFS+DYNRFIG
Sbjct: 1 MYQSSIGAHRLAYRSHISKLVKAGLINHAIHLFDQMTQSNCRVFSVDYNRFIG 53
>ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g13040, mitochondrial; Flags: Precursor
gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis
thaliana] gi|332190841|gb|AEE28962.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/52 (59%), Positives = 38/52 (73%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
M++ LG RL YR+ IA V++G I+ A+QVFDEM S RVFS DYNRFIG
Sbjct: 1 MHQTLGAVRLAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIG 52
>ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297335822|gb|EFH66239.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 517
Score = 63.9 bits (154), Expect = 2e-08
Identities = 31/52 (59%), Positives = 38/52 (73%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
M++ LG RL YR+ IA V++G I+ A+QVFDEM S RVFS DYNRFIG
Sbjct: 1 MHQTLGAVRLAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSSDYNRFIG 52
>ref|XP_006304861.1| hypothetical protein CARUB_v10012598mg [Capsella rubella]
gi|482573572|gb|EOA37759.1| hypothetical protein
CARUB_v10012598mg [Capsella rubella]
Length = 517
Score = 63.2 bits (152), Expect = 4e-08
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
M++ LG RL YR+ IA+ V++G I+ A+QVFDEM S RVFS DYNRFIG
Sbjct: 1 MHQTLGAVRLAYRSRIAKLVKSGIIDNAVQVFDEMRHSSYRVFSSDYNRFIG 52
>ref|XP_006417164.1| hypothetical protein EUTSA_v10007381mg [Eutrema salsugineum]
gi|557094935|gb|ESQ35517.1| hypothetical protein
EUTSA_v10007381mg [Eutrema salsugineum]
Length = 517
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
M++ LG RL YR+ IA V++G I+ A+QVFDE+ S RVFS DYNRFIG
Sbjct: 1 MHQTLGAVRLAYRSRIAYLVKSGMIDNAVQVFDELRHSSFRVFSSDYNRFIG 52
>ref|XP_004504137.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cicer arietinum]
Length = 516
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +1
Query: 178 MYKALGKHRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
MY ++ RL+YR+ I+ V+ G I+ AI++FDEM+Q++ R FSIDYNRFIG
Sbjct: 1 MYHSVAARRLLYRSQISYYVKAGLIDTAIKLFDEMSQTNSRPFSIDYNRFIG 52
>ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
gi|241924617|gb|EER97761.1| hypothetical protein
SORBIDRAFT_02g043430 [Sorghum bicolor]
Length = 551
Score = 56.2 bits (134), Expect = 4e-06
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +1
Query: 199 HRLIYRACIAQCVRTGQIEQAIQVFDEMTQSDCRVFSIDYNRFIG 333
HR +YR ++ VR G+ + IQ FDEM S CR F +DYNRFIG
Sbjct: 162 HRSLYRILLSGYVRAGKFDSVIQTFDEMVTSGCREFGVDYNRFIG 206