BLASTX nr result
ID: Catharanthus23_contig00028106
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00028106
(298 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 60 9e-08
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 60 9e-08
gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum] 60 9e-08
emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera] 60 4e-07
ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624... 58 2e-06
emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera] 58 2e-06
emb|CAN76474.1| hypothetical protein VITISV_016008 [Vitis vinifera] 56 4e-06
ref|XP_006848921.1| hypothetical protein AMTR_s02100p00009220, p... 56 6e-06
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera] 56 6e-06
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 48 8e-06
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 60.5 bits (145), Expect(2) = 9e-08
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = -2
Query: 294 DNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
DNAYK++LP ++Q++ATFNV DLS YD+D+DSRTN ++E G
Sbjct: 1469 DNAYKLDLPGEFQVSATFNVSDLSHYDADLDSRTNSLQEEG 1509
Score = 21.2 bits (43), Expect(2) = 9e-08
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 127 PITRAQTKKRHDNV 86
PITR+QTK+ +D +
Sbjct: 1533 PITRSQTKEFNDKL 1546
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 60.5 bits (145), Expect(2) = 9e-08
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = -2
Query: 294 DNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
DNAYK++LP ++Q++ATFNV DLS YD+D+DSRTN ++E G
Sbjct: 1469 DNAYKLDLPGEFQVSATFNVSDLSHYDADLDSRTNSLQEEG 1509
Score = 21.2 bits (43), Expect(2) = 9e-08
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 127 PITRAQTKKRHDNV 86
PITR+QTK+ +D +
Sbjct: 1533 PITRSQTKEFNDKL 1546
>gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]
Length = 1096
Score = 60.5 bits (145), Expect(2) = 9e-08
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = -2
Query: 294 DNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
DNAYK++LP ++Q++ATFNV DLS YD+D+DSRTN ++E G
Sbjct: 977 DNAYKLDLPGEFQVSATFNVSDLSHYDADLDSRTNSLQEEG 1017
Score = 21.2 bits (43), Expect(2) = 9e-08
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 127 PITRAQTKKRHDNV 86
PITR+QTK+ +D +
Sbjct: 1041 PITRSQTKEFNDKL 1054
>emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera]
Length = 1323
Score = 59.7 bits (143), Expect = 4e-07
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = -2
Query: 297 NDNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
NDNAYK++LP +Y ++ATFNV DLSP+D DSRTN EE G
Sbjct: 1216 NDNAYKLDLPXEYNISATFNVXDLSPFDVGDDSRTNPFEESG 1257
>ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624555 [Citrus sinensis]
Length = 821
Score = 57.8 bits (138), Expect = 2e-06
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = -2
Query: 297 NDNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
NDNAYK++LP +Y + ATFNV DLSP+D DSRTN EE G
Sbjct: 441 NDNAYKLDLPGEYNVIATFNVSDLSPFDVGEDSRTNPFEERG 482
>emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera]
Length = 1115
Score = 57.8 bits (138), Expect = 2e-06
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -2
Query: 297 NDNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
NDNAYK++LP +Y ++ATFNV DLSP+D DSRTN E+ G
Sbjct: 1040 NDNAYKLDLPGEYNISATFNVSDLSPFDVSDDSRTNPFEKRG 1081
>emb|CAN76474.1| hypothetical protein VITISV_016008 [Vitis vinifera]
Length = 519
Score = 56.2 bits (134), Expect = 4e-06
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = -2
Query: 297 NDNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
NDNAYK++LP +Y ++AT NV DLSP+D DSRTN EE G
Sbjct: 412 NDNAYKLDLPGEYNISATVNVSDLSPFDVGDDSRTNPFEERG 453
>ref|XP_006848921.1| hypothetical protein AMTR_s02100p00009220, partial [Amborella
trichopoda] gi|548852379|gb|ERN10502.1| hypothetical
protein AMTR_s02100p00009220, partial [Amborella
trichopoda]
Length = 183
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = -2
Query: 297 NDNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
NDNAYK++LP +Y ++ATFNV DLSP+D+ D RTN +E G
Sbjct: 82 NDNAYKLDLPGEYNVSATFNVSDLSPFDTGEDLRTNPSKEGG 123
>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
Length = 1281
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = -2
Query: 297 NDNAYKINLPRDYQMNATFNVCDLSPYDSDVDSRTNHVEEIG 172
NDNAYK+++P +Y ++ATFNV DLSP+D DS TN EE G
Sbjct: 1195 NDNAYKLDIPGEYNISATFNVSDLSPFDVGDDSXTNPFEEKG 1236
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 48.1 bits (113), Expect(2) = 8e-06
Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Frame = -2
Query: 297 NDNAYKINLPRDYQMNATFNVCDLSPY---DSDVDSRTNHVEE 178
N+NAYKI+LP D+ ++ TFNV DL PY + +++SRT ++E
Sbjct: 1494 NENAYKIDLPADFGVSPTFNVADLKPYLGEEDELESRTTQMQE 1536
Score = 26.9 bits (58), Expect(2) = 8e-06
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 178 NWNNESQSDNNDVIYKGPITRAQTKKRHDNVRVFLNRYEA 59
N N S + V + GPITRA+ ++ + V FL+ Y +
Sbjct: 1542 NINTIDTSTSPHVQHDGPITRARARQLNYQVSSFLSSYSS 1581