BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00027659
         (293 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab...    64   2e-08
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t...    64   3e-08
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...    61   2e-07
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...    61   2e-07
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...    59   7e-07
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    59   9e-07
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]    56   4e-06
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi...    56   4e-06
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]    56   6e-06
gb|AAF79427.1|AC025808_9 F18O14.19 [Arabidopsis thaliana]              55   8e-06
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]    55   8e-06
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]    55   8e-06
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]    55   8e-06
emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]    55   8e-06
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]    55   1e-05

>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1486

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = -2

Query: 265 NGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDSKT-KSTPCNI 89
           NG++F++ ++ +A  A +S  L SS LWH RL H S   ++        S T  S  C I
Sbjct: 482 NGLYFFRGVETAA--AVTSKALPSSQLWHQRLGHPSSKALHLLPFSDVTSSTFDSKTCEI 539

Query: 88  YLRAK*TRDCFPLSINKASQTFDLIHCD 5
            ++AK TRD FPLS NK S  F+L+HCD
Sbjct: 540 CIQAKQTRDPFPLSSNKTSFAFELVHCD 567


>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
 Frame = -2

Query: 268 RNGIFFYKPLQLSASNAFSSTILDSST-LWHIRLCHLSDFVV-----NNFLGLSKDSKTK 107
           +NG++F++  +  AS     T +DSS+ LWH RL H S  V+     ++  G + DSKT 
Sbjct: 446 QNGLYFFRGTETVAS----MTRMDSSSQLWHCRLGHPSSKVLKLLSFSDSTGHAFDSKT- 500

Query: 106 STPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
              C I ++AK TRD FPLS NK S  F+++HCD
Sbjct: 501 ---CEICIKAKQTRDPFPLSNNKTSSPFEMVHCD 531


>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
 Frame = -2

Query: 280 IGV*RNGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLG--LSKDSKTK 107
           IG   NG F ++ ++ +A  A  +++     LWH RL H SD +VN      LS   +  
Sbjct: 262 IGKRENGSFCFRGMENAA--AVHTSVKAPFDLWHRRLGHASDKIVNLLPRELLSSGKEIL 319

Query: 106 STPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
              C+  +RAK TRD FPLS N++  +F LIHCD
Sbjct: 320 ENVCDTCMRAKQTRDTFPLSDNRSMDSFQLIHCD 353


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
 Frame = -2

Query: 280 IGV*RNGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLG--LSKDSKTK 107
           IG   NG F ++ ++ +A  A  +++     LWH RL H SD +VN      LS   +  
Sbjct: 486 IGKRENGSFCFRGMENAA--AVHTSVKAPFDLWHRRLGHASDKIVNLLPRELLSSGKEIL 543

Query: 106 STPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
              C+  +RAK TRD FPLS N++  +F LIHCD
Sbjct: 544 ENVCDTCMRAKQTRDTFPLSDNRSMDSFQLIHCD 577


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
           gi|7269049|emb|CAB79159.1| LTR retrotransposon like
           protein [Arabidopsis thaliana]
          Length = 1109

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
 Frame = -2

Query: 280 IGV*RNGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLG--LSKDSKTK 107
           IG   NG F ++ ++ +A  A  +++     LWH RL H SD +VN      LS   +  
Sbjct: 262 IGKRENGSFCFRGMENAA--AVHTSVKAPFDLWHRRLGHASDKIVNLLPRELLSSGKEIL 319

Query: 106 STPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
              C+  +RAK TRD FPL  N++  +F LIHCD
Sbjct: 320 ENVCDTCMRAKQTRDTFPLRDNRSMDSFQLIHCD 353


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
 Frame = -2

Query: 268 RNGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDSKT-KSTPCN 92
           R G+++     ++ +   ++ +     LWH RL H S  V+++    SK S T  S  C+
Sbjct: 504 RGGVYYLT--DVTPAKIHTANVDSDQALWHQRLGHPSFSVLSSLPLFSKTSSTVTSHSCD 561

Query: 91  IYLRAK*TRDCFPLSINKASQTFDLIHCD 5
           +  RAK TR+ FP SINK  + F LIHCD
Sbjct: 562 VCFRAKQTREVFPESINKTEECFSLIHCD 590


>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
          Length = 1316

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
 Frame = -2

Query: 292 SMRPIGV*--RNGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNF--LGLS 125
           S  PIGV   RNG+++YKPLQ    NA    + +   LWH RL H SD V+ +   LG +
Sbjct: 353 SRNPIGVGKLRNGVYYYKPLQGEKVNAVK--VEEKYELWHRRLGHPSDRVLASIHSLGNN 410

Query: 124 KDSKTKSTPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
                +   C+   R K  R+ F LS  +A + F+LIH D
Sbjct: 411 VMKGIEDYVCDSCCRGKQVRNSFQLSNKRAFEIFNLIHVD 450


>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1156

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = -2

Query: 268 RNGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDS-KTKSTPCN 92
           R+G+++     ++ +   ++ +     LWH RL H S  V+++   L+  S    S  C+
Sbjct: 65  RDGVYYLT--DVATAKIHTAKVSSDQALWHQRLGHPSFSVLSSLPVLTSSSLSVGSRSCD 122

Query: 91  IYLRAK*TRDCFPLSINKASQTFDLIHCD 5
           +  RAK TR+ FP+S NK+ + F LIHCD
Sbjct: 123 VCFRAKQTREVFPVSTNKSIECFSLIHCD 151


>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
          Length = 1196

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = -2

Query: 277 GV*RNGIFFYKPLQ------LSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDS 116
           GV R+G++++   +      +S  NA S+       LWH R+ H S+ VV     +S   
Sbjct: 364 GVRRDGLYYFDGAEGDSVQHVSVHNAASTL-----ELWHKRMGHPSEKVVKLLPPVSNLK 418

Query: 115 KTKSTPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
            + +  C I  RAK  RD FPLS NKA++ F+ IHCD
Sbjct: 419 GSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCD 455


>gb|AAF79427.1|AC025808_9 F18O14.19 [Arabidopsis thaliana]
          Length = 1158

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
 Frame = -2

Query: 265 NGIFFYKPLQLSASNAFS-STILDSSTLWHIRLCHLSDFVV-----NNFLGLSKDSKTKS 104
           NG++F++ L ++A      ST +D   +WH RL H S   +     ++F     DSK   
Sbjct: 278 NGLYFFRGLGVAAPVQHKDSTPID---VWHRRLGHPSSKAMEMLKFSDFSSSGFDSKD-- 332

Query: 103 TPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
             C I + AK TRD FPLS NK S  F+LIHCD
Sbjct: 333 --CEICISAKQTRDSFPLSSNKTSFAFELIHCD 363


>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
          Length = 1099

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = -2

Query: 277 GV*RNGIFFYKPLQ------LSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDS 116
           GV R+G++++   +      +S  NA S+       LWH R+ H S+ VV     +S   
Sbjct: 151 GVRRDGLYYFGGAEGDSVQHVSVHNAASTL-----ELWHKRMGHPSEKVVKLLPPVSNLK 205

Query: 115 KTKSTPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
            + +  C I  RAK  RD FPLS NKA++ F+ IHCD
Sbjct: 206 GSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCD 242


>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
          Length = 1157

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
 Frame = -2

Query: 268 RNGIFFYKPLQLSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFL---GLSKDSKTKSTP 98
           R G++F K +  +   A+ +T + S  LW+ R+ H S  +V+       + ++   K+  
Sbjct: 391 REGLYFLKGV--TPIRAYKTTSIASYELWNRRMGHPSSKIVDLIYEVDSVGRNDGVKNKF 448

Query: 97  CNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
           C+I+ RA+ TR+ F  S NKA + FDLIHCD
Sbjct: 449 CDIFFRAQQTREVFFSSDNKAKECFDLIHCD 479


>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
          Length = 1178

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = -2

Query: 277 GV*RNGIFFYKPLQ------LSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDS 116
           GV R+G++++   +      +S  NA S+       LWH R+ H S+ VV     +S   
Sbjct: 237 GVRRDGLYYFGGAEGDSVQHVSVHNAASTL-----ELWHKRMGHPSEKVVKLLPPVSNLK 291

Query: 115 KTKSTPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
            + +  C I  RAK  RD FPLS NKA++ F+ IHCD
Sbjct: 292 GSLNKACEICFRAKHXRDKFPLSDNKATRIFEKIHCD 328


>emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]
          Length = 1191

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = -2

Query: 277 GV*RNGIFFYKPLQ------LSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDS 116
           GV R+G++++   +      +S  NA S+       LWH R+ H S+ VV     +S   
Sbjct: 196 GVRRDGLYYFGGAEGDSVQHVSVHNAASTL-----ELWHKRMRHPSEKVVKLLPPVSNLK 250

Query: 115 KTKSTPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
            + +  C I  RAK  RD FPLS NKA++ F+ IHCD
Sbjct: 251 GSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCD 287


>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
          Length = 1129

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = -2

Query: 277 GV*RNGIFFYKPLQ------LSASNAFSSTILDSSTLWHIRLCHLSDFVVNNFLGLSKDS 116
           GV R+G++++   +      +S  NA S+       LWH R+ H S+ VV     +S   
Sbjct: 232 GVRRDGLYYFGGAEGDSVQHVSVHNAASTL-----ELWHNRMGHPSEKVVKLLPLVSNIK 286

Query: 115 KTKSTPCNIYLRAK*TRDCFPLSINKASQTFDLIHCD 5
            + +  C I  RAK  RD FPLS NKA++ F+ IHCD
Sbjct: 287 GSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCD 323