BLASTX nr result
ID: Catharanthus23_contig00025351
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00025351
(738 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 118 4e-41
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 118 3e-38
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 118 3e-34
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 108 2e-31
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 99 1e-30
gb|EPS72636.1| hypothetical protein M569_02121, partial [Genlise... 103 2e-28
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 109 2e-28
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 90 3e-28
ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein A... 107 3e-27
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 96 4e-27
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 101 3e-26
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 124 3e-26
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 124 3e-26
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 123 7e-26
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga... 93 1e-25
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 105 2e-25
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 120 4e-25
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 120 4e-25
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 85 4e-25
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 119 1e-24
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 118 bits (296), Expect(3) = 4e-41
Identities = 61/160 (38%), Positives = 96/160 (60%)
Frame = -2
Query: 482 GPFQGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKA 303
G QGDP+SP +FVLC+E LS I + +G+WK + AR GT +SHLFFADDL+ +A
Sbjct: 1128 GVRQGDPLSPYIFVLCIERLSHGISRSIQQGHWKPIRLARMGTPLSHLFFADDLLFLSEA 1187
Query: 302 SKTQACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYL 123
S QA ++ +++ +F SG K+N SK+ ++ S N+ +A ++ +T NL YL
Sbjct: 1188 SSQQAIIINKIIDEFSASSGAKVNKSKTLVYFSANISAMEASRIGSDLGYSVTDNLGKYL 1247
Query: 122 SRYPTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P S+ K + +++K+ ++LSGW A L+ A +
Sbjct: 1248 G-VPLCHSRISK-QTYQSIVDKIDQRLSGWNASHLTLAGR 1285
Score = 58.9 bits (141), Expect(3) = 4e-41
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = -1
Query: 738 HALNNVIVVQEVLHTIRRKKGNWGCLAVKVHLEKPYDRMSWNFL 607
H N+IV QE++H++RRKKG G +A+KV L K YDR+SW F+
Sbjct: 1042 HITENIIVAQEIIHSMRRKKGRKGFMAIKVDLGKAYDRLSWTFI 1085
Score = 38.5 bits (88), Expect(3) = 4e-41
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 613 FLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
F++ L ++L L+ LI+ CI +A+M+VL NGE+ F RG+
Sbjct: 1084 FIQETLQELNLPTMLINLIMECITTATMNVLWNGELSSEFCPGRGV 1129
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 118 bits (296), Expect(3) = 3e-38
Identities = 64/157 (40%), Positives = 93/157 (59%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP L+V+CME L+ I EV GNWK V +R G +S+L FADDLILF +AS
Sbjct: 641 QGDPLSPYLYVICMERLAHLIDQEVTNGNWKPVKASRNGPPISNLAFADDLILFSEASVE 700
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
QA +M+ L FC SG K+N KSK++ S N + + T + YL
Sbjct: 701 QAQVMKWCLDRFCEASGSKVNEDKSKIYFSANTHLDIRDAVCNTLAMEATADFGKYLG-V 759
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
PT++ + K + + Y+++++ KL+GWK + LS A +
Sbjct: 760 PTINGRSSKRE-YQYLVDRINGKLAGWKTKTLSIAGR 795
Score = 52.8 bits (125), Expect(3) = 3e-38
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = -1
Query: 729 NNVIVVQEVLHTIRRKKGNWGCLAVKVHLEKPYDRMSWNFL 607
+NVI+VQE+ H++R K+G G +AVK+ EK YDR+ W F+
Sbjct: 555 DNVIIVQEMFHSMRNKQGKKGFMAVKIDFEKAYDRLRWTFI 595
Score = 34.7 bits (78), Expect(3) = 3e-38
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -3
Query: 613 FLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
F+ L + + +LV +++ C+ SA++ +L NGE +E +RGL
Sbjct: 594 FIRESLMELRIPQHLVDIVMNCVSSANLQILWNGEPMEKICPTRGL 639
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 118 bits (296), Expect(3) = 3e-34
Identities = 65/160 (40%), Positives = 95/160 (59%)
Frame = -2
Query: 482 GPFQGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKA 303
G QGDP+SP +FVLC+E LS I + + +WK + +R GT +SHLFF DDL+LF +A
Sbjct: 62 GVRQGDPLSPYIFVLCVERLSHGIYQSIHQDHWKPIRLSRLGTPLSHLFFTDDLLLFAEA 121
Query: 302 SKTQACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYL 123
+ QA + VL DFC SG K+N SK+ ++ S+NV A ++ R +T +L YL
Sbjct: 122 TSGQAQCINSVLGDFCLSSGTKVNQSKTHVYFSKNVPDAVATRIWRDLGYTVTKDLGKYL 181
Query: 122 SRYPTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P L S+ + + +++K +KL GW A LS A +
Sbjct: 182 G-MPLLHSRVSQ-QTYQGILDKTDQKLLGWAASQLSLAGR 219
Score = 39.3 bits (90), Expect(3) = 3e-34
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = -3
Query: 613 FLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
F+ L ++L L++LI+ CI S SM++L +GE+ + F+ SRG+
Sbjct: 18 FIYETLTELALPIGLIQLIMECITSTSMNILWHGELTDDFSPSRGV 63
Score = 35.0 bits (79), Expect(3) = 3e-34
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -1
Query: 663 LAVKVHLEKPYDRMSWNFL 607
+A+KV LEK YDR+SWNF+
Sbjct: 1 MAIKVDLEKAYDRLSWNFI 19
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 108 bits (269), Expect(2) = 2e-31
Identities = 68/162 (41%), Positives = 91/162 (56%)
Frame = -2
Query: 488 E*GPFQGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFG 309
E G QGDPISP LFVLC+E L +I+ V RG+WK + ++ G +VSH+ FADDLILF
Sbjct: 445 ERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFA 504
Query: 308 KASKTQACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSV 129
+AS Q K++ KSK+F S NV + ++ + I T L
Sbjct: 505 EASVAQ-----------------KVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGK 547
Query: 128 YLSRYPTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
YL P L + K D FG V+E+V +LSGWK+R LS A +
Sbjct: 548 YLG-MPVLQKRINK-DTFGEVLERVSSRLSGWKSRSLSLAGR 587
Score = 54.7 bits (130), Expect(2) = 2e-31
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = -1
Query: 735 ALNNVIVVQEVLHTIRRKKGNWGCLAVKVHLEKPYDRMSWNFL 607
+ +N++VVQE +H++RRKKG G + +K+ LEK YDR+ W+FL
Sbjct: 362 SFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFL 404
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 99.4 bits (246), Expect(3) = 1e-30
Identities = 54/136 (39%), Positives = 82/136 (60%)
Frame = -2
Query: 410 QHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKTQACLMEQVLKDFCCISG*KIN 231
+H + R +WK + ++ G ++SH+ FADDLILF +AS Q ++ +VL+ FC SG K++
Sbjct: 181 EHSIARKDWKPISLSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVS 240
Query: 230 TSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRYPTLSSKGRK*DLFGYVIEKVR 51
KSK+F S NV + + +S + I T L YL P L + K D FG ++EK+
Sbjct: 241 LEKSKIFFSENVSRDLGKLISDESGISSTRELGKYLG-MPVLQRRINK-DTFGDILEKLT 298
Query: 50 RKLSGWKARMLSKASK 3
+L+GWK R LS A +
Sbjct: 299 TRLAGWKGRFLSLAGR 314
Score = 53.5 bits (127), Expect(3) = 1e-30
Identities = 21/43 (48%), Positives = 33/43 (76%)
Frame = -1
Query: 735 ALNNVIVVQEVLHTIRRKKGNWGCLAVKVHLEKPYDRMSWNFL 607
A +N++++QE +H++RRKKG G + +K+ LEK YDR+ W FL
Sbjct: 107 AADNIVIMQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWEFL 149
Score = 27.3 bits (59), Expect(3) = 1e-30
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 616 EFLESVLDSVSLENNLVKLIVFCIQSASMSVLRN 515
EFLE L +V L + I+ C+ SMS+L N
Sbjct: 147 EFLEDTLRAVRLPEKWIVWIMQCVTEPSMSLLWN 180
>gb|EPS72636.1| hypothetical protein M569_02121, partial [Genlisea aurea]
Length = 1503
Score = 103 bits (257), Expect(3) = 2e-28
Identities = 58/157 (36%), Positives = 88/157 (56%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LF+ C E LS ++ + G RRG +SHLFFADD ++F +AS
Sbjct: 974 QGDPLSPYLFLFCAEGLSSALRAAEQSQSITGFRVTRRGPSISHLFFADDAMIFCEASCA 1033
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
+ +L+D+ SG K+NT KS + S N + SR L+ ++ +YL
Sbjct: 1034 ALSRVSDILQDYERASGQKVNTHKSAMVFSPNTPDSEKEIWSRGLGFLVKSHHDIYLG-L 1092
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P+L+ +K LF ++E+V RK+ GW ++ LS+A K
Sbjct: 1093 PSLTGSSKK-RLFSGLLERVNRKIEGWNSKFLSQAGK 1128
Score = 37.4 bits (85), Expect(3) = 2e-28
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -1
Query: 729 NNVIVVQEVLHTIRR-KKGNWGCLAVKVHLEKPYDRMSWNFL 607
+N++V EV H+IR ++G +++K+ + K YDR+ W+FL
Sbjct: 887 DNILVAFEVNHSIRNLRRGKKSFVSLKLDMNKAYDRVEWSFL 928
Score = 32.0 bits (71), Expect(3) = 2e-28
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -3
Query: 622 ELEFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
E FL+++L + + V+LI+ + S S S++ NG+ + N RGL
Sbjct: 924 EWSFLKAMLIQLGFHISFVELILLAVSSVSYSLVINGDRVGLINPQRGL 972
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 109 bits (272), Expect(3) = 2e-28
Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LFV+CME LS I +V+ WK + R G +SHL FADDL+LF +AS
Sbjct: 65 QGDPLSPYLFVICMERLSHIIADQVEADYWKPMRAGRYGPPISHLLFADDLLLFAEASIE 124
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSR- 117
QA + L FC SG KIN K++++ S+NV + + +L YL
Sbjct: 125 QAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNSLGKYLGAN 184
Query: 116 -YPTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P +S+G F ++I K++ KLSGWK + LS A +
Sbjct: 185 ITPGRTSRGH----FNHIINKIQNKLSGWKQQCLSLAGR 219
Score = 34.7 bits (78), Expect(3) = 2e-28
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 613 FLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
F+E L + L+ +I CI + S ++ NG+ ESF SRG+
Sbjct: 18 FVEECLKECKFPSKLINIIHHCISTPSYKIMWNGDKSESFYPSRGI 63
Score = 28.9 bits (63), Expect(3) = 2e-28
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 663 LAVKVHLEKPYDRMSWNFL 607
+ +K+ LEK YD ++WNF+
Sbjct: 1 MTIKIDLEKAYDLLNWNFV 19
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 89.7 bits (221), Expect(3) = 3e-28
Identities = 43/77 (55%), Positives = 54/77 (70%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP +FVLCME LS I VD G WK V ++ G +VSHLFFADDL+LF +AS
Sbjct: 250 QGDPLSPYIFVLCMEKLSHLINSVVDMGYWKPVRASQSGPKVSHLFFADDLMLFAEASPQ 309
Query: 293 QACLMEQVLKDFCCISG 243
QA +++ L FC +SG
Sbjct: 310 QASIIKDCLDSFCDLSG 326
Score = 42.4 bits (98), Expect(3) = 3e-28
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -1
Query: 738 HALNNVIVVQEVLHTIRRKKGNWGCLAVKVHLEKPYDRMSWNFL 607
H +N+++ QE+L ++ G+ G A KV L K YDR+ W+F+
Sbjct: 161 HISDNIMIAQELLFKFKKSCGSLGFFAWKVDLSKAYDRLRWSFI 204
Score = 40.4 bits (93), Expect(3) = 3e-28
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -3
Query: 613 FLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
F+E +L + LVKLI+ CI + S + NGE+ SF RG+
Sbjct: 203 FIEQILFEAKFPSTLVKLIMSCITTTSFQICFNGELTSSFKAQRGI 248
>ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 786
Score = 107 bits (267), Expect(3) = 3e-27
Identities = 60/157 (38%), Positives = 87/157 (55%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LF++ EVLS ++ V + G+ RRG +SH+FFADD + F KA+
Sbjct: 74 QGDPLSPYLFLIISEVLSVRLTRAVQDKSLLGIKLCRRGPTLSHMFFADDALFFLKATLG 133
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
C + ++ K++C SG IN KS + S N +R L + YL
Sbjct: 134 NVCRLMEIFKEYCKASGQLINGEKSSAYFSPNTPDQMSRLLGELMGFAEVEDPGKYLG-L 192
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
PTL + +K + GY++++V+RKL GWK R LS A K
Sbjct: 193 PTLWGRSKK-EAVGYIVDRVQRKLVGWKQRSLSWAGK 228
Score = 32.7 bits (73), Expect(3) = 3e-27
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -3
Query: 622 ELEFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
E +FL++ L + V LI+ C+ S S S++ NG +SF RGL
Sbjct: 24 EWDFLKAALIRFGFAQSWVNLIMACVSSVSFSIVLNGCPGKSFFPGRGL 72
Score = 28.9 bits (63), Expect(3) = 3e-27
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 687 RKKGNWGCLAVKVHLEKPYDRMSWNFL 607
+K+G L +K+ + K YDR+ W+FL
Sbjct: 2 KKEGGNNELGLKLDMNKAYDRVEWDFL 28
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 96.3 bits (238), Expect(3) = 4e-27
Identities = 58/157 (36%), Positives = 92/157 (58%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP +FVLCME LS I + G+WK + + VSH+F+ADD+ LFG+AS
Sbjct: 639 QGDPLSPYIFVLCMERLSMLISDRIRDGSWKPIKISS-DLGVSHIFYADDVFLFGQASVR 697
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
+++ VL++F ISG ++N SKS + + R L+ + +T+ YL
Sbjct: 698 NGGVIQNVLEEFGNISGLRVNMSKSLAIFPPKMNPQRRRMLADFLTMKGSTSFGKYLG-C 756
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
L +K R+ D G ++EKV+ ++GW+A+ L+ A +
Sbjct: 757 NILPNKLRRGDYDG-LLEKVKSAINGWQAKYLNMAGR 792
Score = 39.7 bits (91), Expect(3) = 4e-27
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = -3
Query: 622 ELEFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
E F+ L + +L+ LI+ CI S ++S++ NGE+ +SF+ SRG+
Sbjct: 589 EWGFIRETLQGFNFPQSLIALIMDCISSPAISLIWNGEVTQSFSPSRGI 637
Score = 32.7 bits (73), Expect(3) = 4e-27
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 726 NVIVVQEVLHTIRRKKGNWGCLAVKVHLEKPYDRMSWNFL 607
N+I+ +E+ ++ +A+K+ L K YD + W F+
Sbjct: 554 NIIIAKEMAFLFKKSNPKRNIMALKIDLSKAYDSLEWGFI 593
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 101 bits (252), Expect(3) = 3e-26
Identities = 54/157 (34%), Positives = 91/157 (57%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LF++ + S+ IQ +V G +R G ++SHLFFADD +LF +A++
Sbjct: 639 QGDPLSPYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLFTRANRQ 698
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
+ ++ +L + SG KIN KS++ SR V + +L+ + YL
Sbjct: 699 ECTIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLG-I 757
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P++S + +K +F +I+++ +KL GWK ++LS+A K
Sbjct: 758 PSISGRSKK-AIFDSLIDRIWKKLQGWKEKLLSRAGK 793
Score = 38.5 bits (88), Expect(3) = 3e-26
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 729 NNVIVVQEVLHTIR-RKKGNWGCLAVKVHLEKPYDRMSWNFL 607
+N ++ EV H+++ R + G +A+K+ + K YDR+ W FL
Sbjct: 552 DNALIAMEVFHSMKNRNRSRKGTIAMKLDMSKAYDRVEWGFL 593
Score = 25.4 bits (54), Expect(3) = 3e-26
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 622 ELEFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
E FL +L ++ + V LI+ + S + S + NG + S +RGL
Sbjct: 589 EWGFLRKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSVCGSVVPARGL 637
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 124 bits (311), Expect = 3e-26
Identities = 72/157 (45%), Positives = 94/157 (59%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP++P LF L ME L+ IQ V+ WK VH R GT +SHLFFADDL+LFG+AS+
Sbjct: 639 QGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLMLFGEASEH 698
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
QA +M L F SG K+N SKS LF S NV G R + ++ + +L YL
Sbjct: 699 QAQIMFDCLDSFSNASGLKVNFSKSLLFCSSNVNAGLKRAIGSILQVPVAESLGTYLG-I 757
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P L + + + F VI+K+R KLS WKA L+ A +
Sbjct: 758 PMLKERVSR-NTFNAVIDKMRTKLSSWKASSLNMAGR 793
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 124 bits (311), Expect = 3e-26
Identities = 72/157 (45%), Positives = 94/157 (59%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP++P LF L ME L+ IQ V+ WK VH R GT +SHLFFADDL+LFG+AS+
Sbjct: 639 QGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLMLFGEASEH 698
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
QA +M L F SG K+N SKS LF S NV G R + ++ + +L YL
Sbjct: 699 QAQIMFDCLDSFSNASGLKVNFSKSLLFCSSNVNAGLKRAIGSILQVPVAESLGTYLG-I 757
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P L + + + F VI+K+R KLS WKA L+ A +
Sbjct: 758 PMLKERVSR-NTFNAVIDKMRTKLSSWKASSLNMAGR 793
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 123 bits (308), Expect = 7e-26
Identities = 72/157 (45%), Positives = 93/157 (59%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+ P LF L ME L+ IQ V+ WK VH R GT +SHLFFADDL+LFG+AS+
Sbjct: 1171 QGDPLVPYLFNLVMERLAHDIQTRVNARTWKPVHITRGGTGISHLFFADDLMLFGEASEH 1230
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
QA +M L F SG K+N SKS LF S NV G R + ++ + +L YL
Sbjct: 1231 QAQIMFDCLDSFSDASGLKVNFSKSLLFCSSNVNAGLKRAIGSILQVPVAESLGTYLG-I 1289
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P L + + + F VI+K+R KLS WKA L+ A +
Sbjct: 1290 PMLKERVSR-NTFNAVIDKMRTKLSSWKASSLNMAGR 1325
>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 93.2 bits (230), Expect(3) = 1e-25
Identities = 52/156 (33%), Positives = 89/156 (57%)
Frame = -2
Query: 470 GDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKTQ 291
GDP+SP LF+L + S+ IQ +V G +R G +SHLFFAD +LF +AS+ +
Sbjct: 640 GDPLSPYLFILIADAFSKMIQKKVQEKQLHGAKASRSGPVISHLFFADVSLLFTRASRQE 699
Query: 290 ACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRYP 111
++ ++L + SG KIN KS++ S+ V + +LS ++ YL P
Sbjct: 700 CAIIVEILNLYEQASGQKINYDKSEVSFSKGVSIAQKEELSNILQMKQVERHMKYLG-IP 758
Query: 110 TLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
+++ + R +F +++++ +KL GWK ++LS+A K
Sbjct: 759 SITGRSRT-AIFDSLMDRIWKKLQGWKEKLLSRAGK 793
Score = 38.5 bits (88), Expect(3) = 1e-25
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 729 NNVIVVQEVLHTIR-RKKGNWGCLAVKVHLEKPYDRMSWNFL 607
+N ++ EV H+++ R + G +A+K+ + K YDR+ W FL
Sbjct: 552 DNALIAMEVFHSMKHRNRSRKGTIAMKLDMSKAYDRVEWGFL 593
Score = 31.6 bits (70), Expect(3) = 1e-25
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 622 ELEFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
E FL +L ++ + V LI+ C+ S S S + NG + S +RGL
Sbjct: 589 EWGFLRKLLLTMGFDGRWVNLIMSCVSSVSYSFIINGGVCGSVTPARGL 637
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 105 bits (261), Expect(2) = 2e-25
Identities = 62/155 (40%), Positives = 90/155 (58%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LF++CME LS I V G W+ + + +SHL FADD++LF KA +
Sbjct: 197 QGDPLSPYLFIICMEKLSLAINKAVHEGEWEPIRMSASSPPLSHLLFADDVLLFTKAKNS 256
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
Q ++ + F G KIN SKS+ F S V K L+ I TT+L YL +
Sbjct: 257 QLRFIKDLFDRFSKALGLKINLSKSRAFYS-GVPHQKIINLTSISGIRSTTSLGKYLG-F 314
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKA 9
P L + ++ D F ++IEK+R +L+ WK ++L+KA
Sbjct: 315 PILKGRPKRSD-FLFIIEKMRNRLATWKNKLLNKA 348
Score = 37.4 bits (85), Expect(2) = 2e-25
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = -3
Query: 688 KKKRKLGLPSS*SSSRKTIRQNELEFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGE 509
+ KRK G + K EFL S L ++ +KLI+ C+ S++ SVL NG
Sbjct: 125 RSKRKKGYVAFKLDLEKAFDNVNWEFLRSCLQDFGFPDDTIKLIMHCVTSSTFSVLWNGN 184
Query: 508 MLESFNLSRGL 476
+ GL
Sbjct: 185 KWPPIKPTHGL 195
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 120 bits (302), Expect = 4e-25
Identities = 68/157 (43%), Positives = 95/157 (60%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LFVLC+E L +I V WK + +R G +SH+ FADDLILF +AS
Sbjct: 90 QGDPLSPYLFVLCLERLCHQIDLAVGTKEWKPISMSRGGPLLSHICFADDLILFAEASVA 149
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
Q ++ +VL+ FC SG K++ KSK+F S+NV + + +S + I T L YL
Sbjct: 150 QIRVVRKVLEKFCIASGQKVSLEKSKIFFSQNVHRDLEKFISDESGIKSTKELGKYLG-M 208
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P L + K D FG ++ +V +L+GWK RMLS A +
Sbjct: 209 PVLQKRINK-DTFGEILLRVSSRLAGWKGRMLSLAGR 244
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 120 bits (302), Expect = 4e-25
Identities = 64/157 (40%), Positives = 94/157 (59%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LF+LCME LS IQ V +G+W+ +H G Q+SHL FADD++LF KA +
Sbjct: 637 QGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSS 696
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
Q + + F SG KIN SKS+ + S GK L+ I TT L YL +
Sbjct: 697 QLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLG-F 755
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P L + ++ D F +++EK++ +L+ WK R+L++ +
Sbjct: 756 PMLQGRPKRSD-FNFILEKMQTRLASWKNRLLNRTGR 791
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 84.7 bits (208), Expect(3) = 4e-25
Identities = 54/157 (34%), Positives = 77/157 (49%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LF+ +VLS+ I V VSHLFFADD + F +A+
Sbjct: 1244 QGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDSLFFLRATLQ 1303
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
+ +L +C SG IN KS +F S N A LS +I + ++ YL
Sbjct: 1304 NCETLSDLLHTYCIASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVSDPGTYLG-L 1362
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
PT + +K G++ + + RK+ GWK LS+A K
Sbjct: 1363 PTFWHRSKK-KALGFIKDSILRKVKGWKQATLSQAGK 1398
Score = 38.5 bits (88), Expect(3) = 4e-25
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 729 NNVIVVQEVLHTIRRKKG-NWGCLAVKVHLEKPYDRMSWNFL 607
+NVI+ E+ H ++ + N G +K+ + K YDR+ WNFL
Sbjct: 1157 DNVIIAHEIYHHLKLTRSCNNGAFGLKLDMNKAYDRVEWNFL 1198
Score = 38.5 bits (88), Expect(3) = 4e-25
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -3
Query: 622 ELEFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGL 476
E FLE+VL + ++ + L++ C+ ++S+SVL NG+ SF SRGL
Sbjct: 1194 EWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKPGPSFLPSRGL 1242
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 119 bits (297), Expect = 1e-24
Identities = 67/157 (42%), Positives = 96/157 (61%)
Frame = -2
Query: 473 QGDPISPSLFVLCMEVLSQKIQHEVDRGNWKGVHTARRGTQVSHLFFADDLILFGKASKT 294
QGDP+SP LFVLC+E L I+ V + WK + + G+++SH+ FADDLILF +AS
Sbjct: 498 QGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVA 557
Query: 293 QACLMEQVLKDFCCISG*KINTSKSKLFVSRNVRQGKARKLSRKFEILLTTNLSVYLSRY 114
Q ++ +VL+ FC SG K++ KSK+F S NV + + +S + I T L YL
Sbjct: 558 QIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLG-M 616
Query: 113 PTLSSKGRK*DLFGYVIEKVRRKLSGWKARMLSKASK 3
P L + K + FG V+E+V +L+GWK R LS A +
Sbjct: 617 PILQKRMNK-ETFGEVLERVSARLAGWKGRSLSLAGR 652
Score = 54.3 bits (129), Expect(2) = 7e-10
Identities = 21/43 (48%), Positives = 35/43 (81%)
Frame = -1
Query: 735 ALNNVIVVQEVLHTIRRKKGNWGCLAVKVHLEKPYDRMSWNFL 607
+++N+++VQE +H++RRKKG G + +K+ LEK YDR+ W+FL
Sbjct: 410 SIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFL 452
Score = 35.8 bits (81), Expect(2) = 7e-10
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 616 EFLESVLDSVSLENNLVKLIVFCIQSASMSVLRNGEMLESFNLSRGLSK--EIQSLLLCL 443
+FL+ L++ L I+ + SMSVL NGE +SF +RGL + + L L
Sbjct: 450 DFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVL 509
Query: 442 CFVWKC 425
C C
Sbjct: 510 CLERLC 515