BLASTX nr result
ID: Catharanthus23_contig00025124
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00025124
(223 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 77 2e-19
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 77 2e-19
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 77 2e-19
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 77 2e-19
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 77 2e-19
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 77 2e-19
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 77 2e-19
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 77 3e-19
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 77 3e-19
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 76 5e-19
gb|AAG44340.1|AF233002_1 reverse transcriptase-like protein [Ama... 76 7e-19
gb|AAG44331.1|AF232991_1 reverse transcriptase-like protein [Ama... 76 7e-19
pir||T03662 reverse transcriptase homolog - rice copia-like retr... 75 1e-18
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 73 2e-18
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 75 3e-18
gb|ABG22118.1| polyprotein [Hydrangea macrophylla] 68 3e-18
gb|AAG44336.1|AF232998_1 reverse transcriptase-like protein [Ama... 74 3e-18
gb|AAG44325.1|AF232983_1 reverse transcriptase-like protein [Ama... 69 5e-18
gb|AAG44341.1|AF233003_1 reverse transcriptase-like protein [Ama... 69 5e-18
gb|AAG44326.1|AF232984_1 reverse transcriptase-like protein [Ama... 69 5e-18
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 77.0 bits (188), Expect(2) = 2e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 1161 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 1206
Score = 43.9 bits (102), Expect(2) = 2e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 1134 MDVKTAFLHGELEEDIYMEQPKGFVVPG 1161
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 77.0 bits (188), Expect(2) = 2e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 927 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 972
Score = 43.9 bits (102), Expect(2) = 2e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 900 MDVKTAFLHGELEEDIYMEQPEGFVVPG 927
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 77.0 bits (188), Expect(2) = 2e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 863 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 908
Score = 43.9 bits (102), Expect(2) = 2e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 836 MDVKTAFLHGELEEDIYMEQPEGFVVPG 863
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 77.0 bits (188), Expect(2) = 2e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 890 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 935
Score = 43.9 bits (102), Expect(2) = 2e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 863 MDVKTAFLHGELEEDIYMEQPEGFVVPG 890
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 77.0 bits (188), Expect(2) = 2e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 880 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 925
Score = 43.9 bits (102), Expect(2) = 2e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 853 MDVKTAFLHGELEEDIYMEQPEGFVVPG 880
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 77.0 bits (188), Expect(2) = 2e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 712 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 757
Score = 43.9 bits (102), Expect(2) = 2e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 685 MDVKTAFLHGELEEDIYMEQPEGFVVPG 712
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 77.0 bits (188), Expect(2) = 2e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 340 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 385
Score = 43.9 bits (102), Expect(2) = 2e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 313 MDVKTAFLHGELEEDIYMEQPEGFVVPG 340
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 77.0 bits (188), Expect(2) = 3e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 989 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 1034
Score = 43.5 bits (101), Expect(2) = 3e-19
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGF 150
+DVKTAFLHG+LEE IYM QP GF
Sbjct: 962 MDVKTAFLHGELEEDIYMEQPEGF 985
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 77.0 bits (188), Expect(2) = 3e-19
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYDSC+Y
Sbjct: 989 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY 1034
Score = 43.5 bits (101), Expect(2) = 3e-19
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGF 150
+DVKTAFLHG+LEE IYM QP GF
Sbjct: 962 MDVKTAFLHGELEEDIYMEQPEGF 985
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 75.9 bits (185), Expect(2) = 5e-19
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F +SNYD+C+Y
Sbjct: 696 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCVY 741
Score = 43.9 bits (102), Expect(2) = 5e-19
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG+LEE IYM QP GF G
Sbjct: 669 MDVKTAFLHGELEEDIYMEQPEGFVVPG 696
>gb|AAG44340.1|AF233002_1 reverse transcriptase-like protein [Amaranthus quitensis]
Length = 95
Score = 75.9 bits (185), Expect(2) = 7e-19
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = -1
Query: 148 KKKGKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
K +GKE + C L+KSLYG KQSPRQWYK FDSFML GF +S+YD C+Y
Sbjct: 26 KVEGKESLVCRLRKSLYGLKQSPRQWYKRFDSFMLKQGFSRSSYDCCVY 74
Score = 43.5 bits (101), Expect(2) = 7e-19
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -3
Query: 218 DVKTAFLHGKLEEIIYMRQPPGFEEKG 138
DVKTAFLHG LEE IYM QP GF+ +G
Sbjct: 3 DVKTAFLHGDLEEEIYMYQPEGFKVEG 29
>gb|AAG44331.1|AF232991_1 reverse transcriptase-like protein [Amaranthus quitensis]
Length = 94
Score = 75.9 bits (185), Expect(2) = 7e-19
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = -1
Query: 148 KKKGKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
K +GKE + C L+KSLYG KQSPRQWYK FDSFML GF +S+YD C+Y
Sbjct: 25 KVEGKESLVCRLRKSLYGLKQSPRQWYKRFDSFMLKQGFSRSSYDCCVY 73
Score = 43.5 bits (101), Expect(2) = 7e-19
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -3
Query: 218 DVKTAFLHGKLEEIIYMRQPPGFEEKG 138
DVKTAFLHG LEE IYM QP GF+ +G
Sbjct: 2 DVKTAFLHGDLEEEIYMYQPEGFKVEG 28
>pir||T03662 reverse transcriptase homolog - rice copia-like retrotransposon
Rtr21 (fragment) gi|1419127|emb|CAA99752.1| reverse
transcriptase [Oryza sativa Japonica Group]
Length = 92
Score = 75.1 bits (183), Expect(2) = 1e-18
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQW+K FDSFML+ F +SNYDSC+Y
Sbjct: 29 GKENLVCRLKKSLYGLKQSPRQWHKRFDSFMLSQEFRRSNYDSCVY 74
Score = 43.5 bits (101), Expect(2) = 1e-18
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGF 150
+DVKTAFLHG+LEE IYM QP GF
Sbjct: 2 MDVKTAFLHGELEEDIYMEQPEGF 25
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 72.8 bits (177), Expect(2) = 2e-18
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FD++ML +G+ + YD C+Y
Sbjct: 920 GKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVY 965
Score = 45.4 bits (106), Expect(2) = 2e-18
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
+DVKTAFLHG LEE IYM QP GF E G
Sbjct: 893 MDVKTAFLHGDLEEDIYMSQPEGFVETG 920
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 75.1 bits (183), Expect(2) = 3e-18
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = -1
Query: 139 GKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
GKE++ C LKKSLYG KQSPRQWYK FDSFML+ F SNYDSC+Y
Sbjct: 926 GKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVY 971
Score = 42.0 bits (97), Expect(2) = 3e-18
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = -3
Query: 221 LDVKTAFLHGKLEEIIYMRQPPGFEEKG 138
++VKTAFLHG+LEE IYM QP GF G
Sbjct: 899 MNVKTAFLHGELEEDIYMEQPEGFVVPG 926
>gb|ABG22118.1| polyprotein [Hydrangea macrophylla]
Length = 351
Score = 67.8 bits (164), Expect(2) = 3e-18
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = -1
Query: 142 KGKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
KGKEH+ C LKKSLYG KQ+PRQWY+ FDSFM+ GF ++ C+Y
Sbjct: 26 KGKEHLVCKLKKSLYGLKQAPRQWYRKFDSFMVGHGFKRTAAYQCVY 72
Score = 49.3 bits (116), Expect(2) = 3e-18
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -3
Query: 218 DVKTAFLHGKLEEIIYMRQPPGFEEKG 138
DVKTAFLHG LEE+IYM QP GFE KG
Sbjct: 1 DVKTAFLHGDLEEVIYMAQPEGFEVKG 27
>gb|AAG44336.1|AF232998_1 reverse transcriptase-like protein [Amaranthus quitensis]
gi|12005188|gb|AAG44338.1|AF233000_1 reverse
transcriptase-like protein [Amaranthus quitensis]
Length = 95
Score = 73.6 bits (179), Expect(2) = 3e-18
Identities = 32/49 (65%), Positives = 38/49 (77%)
Frame = -1
Query: 148 KKKGKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
K +GKE + C L+KSLYG KQSPRQWYK FDSF L GF +S+YD C+Y
Sbjct: 26 KVEGKESLVCRLRKSLYGLKQSPRQWYKRFDSFTLKQGFSRSSYDCCVY 74
Score = 43.5 bits (101), Expect(2) = 3e-18
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -3
Query: 218 DVKTAFLHGKLEEIIYMRQPPGFEEKG 138
DVKTAFLHG LEE IYM QP GF+ +G
Sbjct: 3 DVKTAFLHGDLEEEIYMYQPEGFKVEG 29
>gb|AAG44325.1|AF232983_1 reverse transcriptase-like protein [Amaranthus quitensis]
Length = 97
Score = 68.6 bits (166), Expect(2) = 5e-18
Identities = 27/49 (55%), Positives = 41/49 (83%)
Frame = -1
Query: 148 KKKGKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
++KG+E++ C LKKSLYG KQ+PRQWY+ FDSFM++ G+ +++ D C+Y
Sbjct: 26 EEKGRENLVCKLKKSLYGLKQAPRQWYRKFDSFMISNGYKRTSADPCVY 74
Score = 48.1 bits (113), Expect(2) = 5e-18
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = -3
Query: 218 DVKTAFLHGKLEEIIYMRQPPGFEEKG 138
DVKTAFLHG L E IYM QP GFEEKG
Sbjct: 3 DVKTAFLHGDLHEEIYMEQPEGFEEKG 29
>gb|AAG44341.1|AF233003_1 reverse transcriptase-like protein [Amaranthus quitensis]
Length = 95
Score = 68.6 bits (166), Expect(2) = 5e-18
Identities = 27/49 (55%), Positives = 41/49 (83%)
Frame = -1
Query: 148 KKKGKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
++KG+E++ C LKKSLYG KQ+PRQWY+ FDSFM++ G+ +++ D C+Y
Sbjct: 26 EEKGRENLVCKLKKSLYGLKQTPRQWYRKFDSFMISNGYKRTSADPCVY 74
Score = 48.1 bits (113), Expect(2) = 5e-18
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = -3
Query: 218 DVKTAFLHGKLEEIIYMRQPPGFEEKG 138
DVKTAFLHG L E IYM QP GFEEKG
Sbjct: 3 DVKTAFLHGDLHEEIYMEQPEGFEEKG 29
>gb|AAG44326.1|AF232984_1 reverse transcriptase-like protein [Amaranthus quitensis]
Length = 95
Score = 68.6 bits (166), Expect(2) = 5e-18
Identities = 27/49 (55%), Positives = 41/49 (83%)
Frame = -1
Query: 148 KKKGKEHMACLLKKSLYGFKQSPRQWYK*FDSFMLNVGFIKSNYDSCLY 2
++KG+E++ C LKKSLYG KQ+PRQWY+ FDSFM++ G+ +++ D C+Y
Sbjct: 26 EEKGRENLVCKLKKSLYGLKQAPRQWYRKFDSFMISNGYKRTSADPCVY 74
Score = 48.1 bits (113), Expect(2) = 5e-18
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = -3
Query: 218 DVKTAFLHGKLEEIIYMRQPPGFEEKG 138
DVKTAFLHG L E IYM QP GFEEKG
Sbjct: 3 DVKTAFLHGDLHEEIYMEQPEGFEEKG 29