BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00024700
         (291 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     60   3e-07

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 32/127 (25%)
 Frame = +3

Query: 3   PRFQSQRYVPPYPPQSGN-SMFEEKKVLSTL-KGLEAMT--------------------- 113
           P F +Q    P+P Q  N S  +  K LS L KGLEAM                      
Sbjct: 289 PPFPNQH---PHPHQHTNPSNSDHDKRLSVLEKGLEAMIKASTQTTNMLTQSSTTLNSFM 345

Query: 114 ----QIVDSHTQSIVRLETQIGQLANAISRRDEDKLHSYPMENPR-----ANHHEKVKAI 266
               Q+++S+TQ+I RLETQ+GQLA A+S R++ K  S P+ NP+     +N+  ++ AI
Sbjct: 346 QTTGQVLNSNTQAIARLETQLGQLAAAVSEREKGKFPSQPVANPKDTGSSSNNPAQLNAI 405

Query: 267 NTLRNEK 287
           +TLR+ K
Sbjct: 406 HTLRSGK 412