BLASTX nr result
ID: Catharanthus23_contig00024502
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00024502
(261 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 54 1e-12
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera] 54 1e-12
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 53 2e-12
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera] 53 2e-12
emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera] 53 2e-12
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 54 3e-12
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 53 8e-12
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 51 8e-12
emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera] 53 1e-11
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera] 50 2e-11
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 49 5e-11
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 49 5e-11
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 49 1e-10
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 50 1e-10
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 56 1e-10
dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t... 49 3e-09
emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera] 46 5e-09
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera] 53 9e-08
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop... 49 9e-08
emb|CAN83378.1| hypothetical protein VITISV_011333 [Vitis vinifera] 44 9e-08
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 53.5 bits (127), Expect(2) = 1e-12
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
LWGPY+T S GA YFLTI+DDYSR V +Y++ +K
Sbjct: 454 LWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDK 488
Score = 45.1 bits (105), Expect(2) = 1e-12
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = -1
Query: 255 SAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
S+ N C++C RAK+T + FPLSINK IF+LI+C
Sbjct: 415 SSTHLNKACDVCHRAKQTRNSFPLSINKTLRIFELIYC 452
>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 53.9 bits (128), Expect(2) = 1e-12
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVKSTQF*KSIL 2
LWG YK VS+ GA YFLTI+DD+SRAV IY++ +K + Q S +
Sbjct: 456 LWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFQMFMSFI 501
Score = 44.7 bits (104), Expect(2) = 1e-12
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
N S N C IC RAK D FPLS NKA IF+ IHC
Sbjct: 416 NLKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHC 454
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 53.1 bits (126), Expect(2) = 2e-12
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVK 29
LWG YK VS+ GA YFLTI+DD+SRAV IY++ +K +
Sbjct: 329 LWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTE 365
Score = 44.7 bits (104), Expect(2) = 2e-12
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
N S N C IC RAK D FPLS NKA IF+ IHC
Sbjct: 289 NLKGSLNKACEICFRAKHXRDKFPLSDNKATRIFEKIHC 327
>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
Length = 1099
Score = 53.1 bits (126), Expect(2) = 2e-12
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVK 29
LWG YK VS+ GA YFLTI+DD+SRAV IY++ +K +
Sbjct: 243 LWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTE 279
Score = 44.7 bits (104), Expect(2) = 2e-12
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
N S N C IC RAK D FPLS NKA IF+ IHC
Sbjct: 203 NLKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHC 241
>emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]
Length = 1191
Score = 52.8 bits (125), Expect(2) = 2e-12
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
LWG YK VS+ GA YFLTI+DD+SRAV IY++ +K
Sbjct: 288 LWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDK 322
Score = 44.7 bits (104), Expect(2) = 2e-12
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
N S N C IC RAK D FPLS NKA IF+ IHC
Sbjct: 248 NLKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHC 286
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 53.9 bits (128), Expect(2) = 3e-12
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVKSTQF*KSIL 2
LWGPY+T S G+ YFLT++DDYSRAV +Y++ K ++ + K+ +
Sbjct: 568 LWGPYRTTSICGSRYFLTLVDDYSRAVWLYLLPSKQEAPKHLKNFI 613
Score = 43.1 bits (100), Expect(2) = 3e-12
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = -1
Query: 255 SAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
S+ + C IC++AK+T D FPLS NK F+L+HC
Sbjct: 529 SSTFDSKTCEICIQAKQTRDPFPLSSNKTSFAFELVHC 566
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 52.8 bits (125), Expect(2) = 8e-12
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVKSTQ 20
+WGPY+ ++ GA+YFLTI+DDYSRAV Y++ EK + Q
Sbjct: 591 VWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQ 630
Score = 42.7 bits (99), Expect(2) = 8e-12
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = -1
Query: 255 SAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
S+ ++ C++C RAK+T + FP SINK F LIHC
Sbjct: 552 SSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIHC 589
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 50.8 bits (120), Expect(2) = 8e-12
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVK 29
LW YK VS+ GA YFLTI+DD+SRAV IY++ +K +
Sbjct: 324 LWASYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTE 360
Score = 44.7 bits (104), Expect(2) = 8e-12
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
N S N C IC RAK D FPLS NKA IF+ IHC
Sbjct: 284 NIKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHC 322
>emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera]
Length = 1262
Score = 53.1 bits (126), Expect(2) = 1e-11
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVK 29
LWG YK VS+ GA YFLTI+DD+SRAV IY++ +K +
Sbjct: 575 LWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTE 611
Score = 41.6 bits (96), Expect(2) = 1e-11
Identities = 21/39 (53%), Positives = 22/39 (56%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
N S N C IC RAK D F LS NKA IF+ IHC
Sbjct: 535 NLKGSLNKACEICFRAKHPRDKFSLSDNKATRIFEKIHC 573
>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 50.4 bits (119), Expect(2) = 2e-11
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVK 29
LWG YK VS+ A YFLTI+DD+SRAV IY++ K +
Sbjct: 576 LWGSYKHVSSCAARYFLTIIDDFSRAVWIYLLVNKTE 612
Score = 43.5 bits (101), Expect(2) = 2e-11
Identities = 21/39 (53%), Positives = 23/39 (58%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
N S N C IC RAK D FPL+ NKA IF+ IHC
Sbjct: 536 NLKGSLNKACEICFRAKHPRDKFPLTDNKATRIFEKIHC 574
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 48.5 bits (114), Expect(2) = 5e-11
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
+WGPY+ S+ GA+YFLTI+DD+SR+V Y++ K
Sbjct: 574 VWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAK 608
Score = 44.3 bits (103), Expect(2) = 5e-11
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1
Query: 261 GNSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
G+S S+ C++C RAK+T + FP S NK+ F LIHC
Sbjct: 533 GSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHC 572
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 48.5 bits (114), Expect(2) = 5e-11
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
+WGPY+ S+ GA+YFLTI+DD+SR+V Y++ K
Sbjct: 574 VWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAK 608
Score = 44.3 bits (103), Expect(2) = 5e-11
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1
Query: 261 GNSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
G+S S+ C++C RAK+T + FP S NK+ F LIHC
Sbjct: 533 GSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHC 572
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 49.3 bits (116), Expect(2) = 1e-10
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
LWGPY+T S G+ YFLT++D+Y+RAV +Y++ K
Sbjct: 532 LWGPYRTTSICGSNYFLTLVDNYTRAVWLYLLPSK 566
Score = 42.4 bits (98), Expect(2) = 1e-10
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -1
Query: 231 CNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
C IC++AK+T D FPLS NK + F+++HC
Sbjct: 501 CEICIKAKQTRDPFPLSNNKTSSPFEMVHC 530
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 49.7 bits (117), Expect(2) = 1e-10
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
+WGPY+ S+ GA+YFLTI+DD+SRAV Y++ K
Sbjct: 152 VWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAK 186
Score = 42.0 bits (97), Expect(2) = 1e-10
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -1
Query: 258 NSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
+S + C++C RAK+T + FP+S NK+ F LIHC
Sbjct: 112 SSLSVGSRSCDVCFRAKQTREVFPVSTNKSIECFSLIHC 150
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 56.2 bits (134), Expect(2) = 1e-10
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEKVKSTQF*KS 8
+WGPY+T ST GA+YFLT++DDYSR+V Y+++ K + +Q K+
Sbjct: 564 VWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKN 607
Score = 35.0 bits (79), Expect(2) = 1e-10
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 231 CNICLRAKKTYDCFPLSINKAPAIFDLIH 145
C+ C R+K+T + FP+S NK F LIH
Sbjct: 533 CDTCFRSKQTREVFPISNNKTMECFSLIH 561
>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1098
Score = 48.9 bits (115), Expect(2) = 3e-09
Identities = 18/35 (51%), Positives = 30/35 (85%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
+WGPY+T ++ G++YFLTI+DD+SR+V +++ EK
Sbjct: 567 VWGPYRTPASCGSVYFLTIVDDFSRSVWTFLMAEK 601
Score = 37.7 bits (86), Expect(2) = 3e-09
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 231 CNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
C+IC RAK+ + F S+NK F+LIHC
Sbjct: 536 CDICYRAKQAREVFSPSLNKTTVCFELIHC 565
>emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]
Length = 1109
Score = 46.2 bits (108), Expect(2) = 5e-09
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
LWG Y+ ++ G +YFLTI+DD SRAV IY++ K
Sbjct: 387 LWGAYRVPASCGGIYFLTIVDDCSRAVWIYLLNRK 421
Score = 39.7 bits (91), Expect(2) = 5e-09
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = -1
Query: 261 GNSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
G + N C+IC RA++T + F S NKA FDLIHC
Sbjct: 346 GRNDGXKNKFCDICFRAQQTREMFFSSDNKAKECFDLIHC 385
>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
Length = 1316
Score = 52.8 bits (125), Expect(2) = 9e-08
Identities = 24/42 (57%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
Frame = -3
Query: 154 FNSLY--LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
FN ++ +WGPY+T +T GA YFLTI+DD+SR V IY++ EK
Sbjct: 444 FNLIHVDIWGPYRTPTTSGAHYFLTIVDDHSRGVWIYLMKEK 485
Score = 28.9 bits (63), Expect(2) = 9e-08
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 231 CNICLRAKKTYDCFPLSINKAPAIFDLIH 145
C+ C R K+ + F LS +A IF+LIH
Sbjct: 420 CDSCCRGKQVRNSFQLSNKRAFEIFNLIH 448
>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 48.5 bits (114), Expect(2) = 9e-08
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
+WGPYK S+ GA YFLTI+DD+SRAV I+++ K
Sbjct: 578 VWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLAK 612
Score = 33.1 bits (74), Expect(2) = 9e-08
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 231 CNICLRAKKTYDCFPLSINKAPAIFDLIH 145
C++C+RAK+T F S NKA F IH
Sbjct: 547 CDVCVRAKQTRASFSESFNKAEECFSFIH 575
>emb|CAN83378.1| hypothetical protein VITISV_011333 [Vitis vinifera]
Length = 758
Score = 43.9 bits (102), Expect(2) = 9e-08
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -3
Query: 139 LWGPYKTVSTIGALYFLTILDDYSRAVLIYIITEK 35
LWG Y+ ++ G +YFLTI+DD SR V IY++ K
Sbjct: 316 LWGAYRVPTSCGGIYFLTIVDDCSRVVWIYLLNGK 350
Score = 37.7 bits (86), Expect(2) = 9e-08
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -1
Query: 261 GNSAKSSNAPCNICLRAKKTYDCFPLSINKAPAIFDLIHC 142
G + N C+IC RA++T + F S NK FDLIHC
Sbjct: 275 GGNDGVKNKFCDICFRAQQTREVFFSSDNKVKECFDLIHC 314