BLASTX nr result
ID: Catharanthus23_contig00023480
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00023480
(396 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 80 1e-21
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 80 1e-21
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 80 2e-21
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-... 74 3e-21
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 71 5e-21
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc... 71 5e-21
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g... 71 5e-21
gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subc... 75 7e-21
emb|CAE01974.2| OSJNBb0051N19.3 [Oryza sativa Japonica Group] 74 9e-21
gb|AAM08523.1|AC068654_25 Putative retroelement [Oryza sativa Ja... 74 1e-20
gb|AAP53706.1| retrotransposon protein, putative, unclassified [... 75 1e-20
gb|AAT76321.1| putative integrase [Oryza sativa Japonica Group] ... 75 2e-20
gb|ABA97696.1| retrotransposon protein, putative, unclassified [... 77 2e-20
gb|ABA93940.1| retrotransposon protein, putative, Ty1-copia subc... 75 2e-20
emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa Japonica Group] 75 2e-20
gb|ABA98847.1| retrotransposon protein, putative, unclassified [... 75 6e-20
gb|AAB82754.1| retrofit [Oryza longistaminata] 73 7e-20
gb|ABA91128.1| retrotransposon protein, putative, unclassified [... 75 7e-20
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 72 1e-19
gb|AAM23248.1|AC092553_14 Putative copia-type pol polyprotein [O... 72 2e-19
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1621
Score = 79.7 bits (195), Expect(3) = 1e-21
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL GYL+E+VY+ QPPGFE+P P H+CKL KA+YGLKQAP
Sbjct: 774 LDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAP 820
Score = 37.4 bits (85), Expect(3) = 1e-21
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AW++ L+ ++ +GF S+ D+SLF + +++F+
Sbjct: 816 LKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFV 857
Score = 31.6 bits (70), Expect(3) = 1e-21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 731 LVAKGFKQRYGIDYEDTFSPVVKAAT 756
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 79.7 bits (195), Expect(3) = 1e-21
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL GYL+E+VY+ QPPGFE+P P H+CKL KA+YGLKQAP
Sbjct: 1045 LDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAP 1091
Score = 37.4 bits (85), Expect(3) = 1e-21
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AW++ L+ ++ +GF S+ D+SLF + +++F+
Sbjct: 1087 LKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFV 1128
Score = 31.6 bits (70), Expect(3) = 1e-21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 1002 LVAKGFKQRYGIDYEDTFSPVVKAAT 1027
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 79.7 bits (195), Expect(3) = 2e-21
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL GYL+E+VY+ QPPGFE+P P H+CKL KA+YGLKQAP
Sbjct: 1052 LDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAP 1098
Score = 36.6 bits (83), Expect(3) = 2e-21
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AW++ L+ ++ +GF S+ D+SLF + +++F+
Sbjct: 1094 LKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFV 1135
Score = 31.6 bits (70), Expect(3) = 2e-21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 1009 LVAKGFKQRYGIDYEDTFSPVVKAAT 1034
>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77552672|gb|ABA95469.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 709
Score = 74.3 bits (181), Expect(3) = 3e-21
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VYI QPPGFENP +P+H+ KL KA YGLKQAP
Sbjct: 307 MDVKSAFLNGFIQEEVYIKQPPGFENPDFPNHVFKLSKAFYGLKQAP 353
Score = 42.7 bits (99), Expect(3) = 3e-21
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L+ GF +FD +LF++K+ +F+
Sbjct: 349 LKQAPRAWYDRLKNFLLAKGFTMGKFDKTLFVLKHGDNQLFV 390
Score = 30.4 bits (67), Expect(3) = 3e-21
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ + + +
Sbjct: 264 LVAQGFTQVEGLDFDETFAPVARIE 288
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 70.9 bits (172), Expect(3) = 5e-21
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL G L+E+VY+ QPPG+E P+++CKL KA+YGLKQAP
Sbjct: 992 LDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAP 1038
Score = 43.9 bits (102), Expect(3) = 5e-21
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L+ + +GF S+ D+SLF K VSIFL
Sbjct: 1034 LKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFL 1075
Score = 31.6 bits (70), Expect(3) = 5e-21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 949 LVAKGFKQRYGIDYEDTFSPVVKAAT 974
>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1241
Score = 70.9 bits (172), Expect(3) = 5e-21
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL G L+E+VY+ QPPG+E P+++CKL KA+YGLKQAP
Sbjct: 938 LDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAP 984
Score = 43.9 bits (102), Expect(3) = 5e-21
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L+ + +GF S+ D+SLF K VSIFL
Sbjct: 980 LKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFL 1021
Score = 31.6 bits (70), Expect(3) = 5e-21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 895 LVAKGFKQRYGIDYEDTFSPVVKAAT 920
>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
Japonica Group]
Length = 821
Score = 70.9 bits (172), Expect(3) = 5e-21
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL G L+E+VY+ QPPG+E P+++CKL KA+YGLKQAP
Sbjct: 414 LDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAP 460
Score = 43.9 bits (102), Expect(3) = 5e-21
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L+ + +GF S+ D+SLF K VSIFL
Sbjct: 456 LKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFL 497
Score = 31.6 bits (70), Expect(3) = 5e-21
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 371 LVAKGFKQRYGIDYEDTFSPVVKAAT 396
>gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 904
Score = 75.1 bits (183), Expect(3) = 7e-21
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VY+ QPPGFENP +P+HI KL KA+YGLKQAP
Sbjct: 595 MDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHIFKLSKALYGLKQAP 641
Score = 40.0 bits (92), Expect(3) = 7e-21
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L+ GF + D +LF++K+ +F+
Sbjct: 637 LKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFV 678
Score = 30.8 bits (68), Expect(3) = 7e-21
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ I + +
Sbjct: 552 LVAQGFTQVEGLDFDETFAPIARIE 576
>emb|CAE01974.2| OSJNBb0051N19.3 [Oryza sativa Japonica Group]
Length = 1414
Score = 73.9 bits (180), Expect(3) = 9e-21
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV N FL G++ E+VY+ QPPGFENP +P+H+ KL K++YGLKQAP
Sbjct: 1060 MDVKNVFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKSLYGLKQAP 1106
Score = 41.2 bits (95), Expect(3) = 9e-21
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +LS GF + D +LF++K+ +F+
Sbjct: 1102 LKQAPRAWYDRLKNFLLSKGFTMGKVDKTLFVLKHGDNQLFV 1143
Score = 30.4 bits (67), Expect(3) = 9e-21
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ + + +
Sbjct: 1017 LVAQGFTQVEGLDFDETFAPVARIE 1041
>gb|AAM08523.1|AC068654_25 Putative retroelement [Oryza sativa Japonica Group]
gi|31429833|gb|AAP51828.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1522
Score = 74.3 bits (181), Expect(3) = 1e-20
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VY+ QPPGFENP +P H+ KL KA+YGLKQAP
Sbjct: 1120 MDVKSAFLNGFIQEEVYVKQPPGFENPDFPKHVFKLSKALYGLKQAP 1166
Score = 39.3 bits (90), Expect(3) = 1e-20
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L+ GF + D +LF++K+ +F+
Sbjct: 1162 LKQAPRAWYDRLKNFLLTKGFTIGKVDKTLFVLKHGDNQLFV 1203
Score = 31.6 bits (70), Expect(3) = 1e-20
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GLVAKGFTQ*SGIDYNSTFSQI 68
GLVA+GFTQ G+D++ TF+ +
Sbjct: 1076 GLVAQGFTQVEGLDFDETFANV 1097
>gb|AAP53706.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1419
Score = 74.7 bits (182), Expect(3) = 1e-20
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VY+ QPPGFENP +P+H+ KL KA+YGLKQAP
Sbjct: 1017 MDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAP 1063
Score = 40.0 bits (92), Expect(3) = 1e-20
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L+ GF + D +LF++K+ +F+
Sbjct: 1059 LKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFV 1100
Score = 30.4 bits (67), Expect(3) = 1e-20
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ + + +
Sbjct: 974 LVAQGFTQVEGLDFDETFAPVARIE 998
>gb|AAT76321.1| putative integrase [Oryza sativa Japonica Group]
gi|108709546|gb|ABF97341.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1425
Score = 75.5 bits (184), Expect(3) = 2e-20
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAPLP 228
+DV +AFL G++ E VY+ QPPGFENP +P+H+ KL KA+YGLKQAP P
Sbjct: 1125 MDVKSAFLNGFIQEKVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRP 1173
Score = 38.5 bits (88), Expect(3) = 2e-20
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P WY+ L N +L+ GF + D +LF++K+ +F+
Sbjct: 1167 LKQAPRPWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFI 1208
Score = 30.8 bits (68), Expect(3) = 2e-20
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ I + +
Sbjct: 1082 LVAQGFTQVEGLDFDETFAPIARIE 1106
>gb|ABA97696.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1514
Score = 77.0 bits (188), Expect(3) = 2e-20
Identities = 30/47 (63%), Positives = 41/47 (87%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VY+ QPPGFENP++P+H+ KL KA+YGLKQAP
Sbjct: 1112 MDVKSAFLNGFIQEEVYVKQPPGFENPYFPNHVFKLSKALYGLKQAP 1158
Score = 38.9 bits (89), Expect(3) = 2e-20
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L GF + D +LF++K+ +F+
Sbjct: 1154 LKQAPRAWYDRLKNFLLVKGFTMGKVDKTLFVLKHGDNQLFV 1195
Score = 28.5 bits (62), Expect(3) = 2e-20
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+G TQ G+D++ TFS + + +
Sbjct: 1069 LVAQGSTQVEGLDFDETFSPVARIE 1093
>gb|ABA93940.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1508
Score = 74.7 bits (182), Expect(3) = 2e-20
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DVN+ FL G++ E+VY+ QPPGFENP +P+H+ KL KA+YGLKQAP
Sbjct: 1106 MDVNSDFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAP 1152
Score = 39.3 bits (90), Expect(3) = 2e-20
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L+ GF + D +LF+ K+ +F+
Sbjct: 1148 LKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVFKHGDNQLFV 1189
Score = 30.4 bits (67), Expect(3) = 2e-20
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ + + +
Sbjct: 1063 LVAQGFTQVEGLDFDETFAPVARIE 1087
>emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa Japonica Group]
Length = 1134
Score = 74.7 bits (182), Expect(3) = 2e-20
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VY+ QPPGFENP +P+H+ KL KA+YGLKQAP
Sbjct: 791 MDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAP 837
Score = 39.3 bits (90), Expect(3) = 2e-20
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N L+ GF + D +LF++K+ +F+
Sbjct: 833 LKQAPRAWYDRLKNFFLAKGFTMGKVDKTLFVLKHGDNQLFV 874
Score = 30.4 bits (67), Expect(3) = 2e-20
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ + + +
Sbjct: 748 LVAQGFTQVEGLDFDETFAPVARIE 772
>gb|ABA98847.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1417
Score = 74.7 bits (182), Expect(3) = 6e-20
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VY+ QPPGFENP +P+H+ KL KA+YGLKQAP
Sbjct: 1015 MDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAP 1061
Score = 40.0 bits (92), Expect(3) = 6e-20
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L+ GF + D +LF++K+ +F+
Sbjct: 1057 LKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFV 1098
Score = 28.1 bits (61), Expect(3) = 6e-20
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ +D++ TF+ + + +
Sbjct: 972 LVAQGFTQVESLDFDETFAPVARIE 996
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 73.2 bits (178), Expect(3) = 7e-20
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL G+L+E+VY+ QPPGFE+ P ++CKL KA+YGLKQAP
Sbjct: 1044 LDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAP 1090
Score = 37.7 bits (86), Expect(3) = 7e-20
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L+ ++ +GF S+ D+SLF + + +F+
Sbjct: 1086 LKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFV 1127
Score = 31.6 bits (70), Expect(3) = 7e-20
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 1001 LVAKGFKQRYGIDYEDTFSPVVKAAT 1026
>gb|ABA91128.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1258
Score = 74.7 bits (182), Expect(3) = 7e-20
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV +AFL G++ E+VY+ QPPGFENP +P+H+ KL KA+YGLKQAP
Sbjct: 959 MDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAP 1005
Score = 39.3 bits (90), Expect(3) = 7e-20
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L N +L+ GF + D +LF++K+ +F+
Sbjct: 1001 LKQAPRAWYDMLKNFLLTKGFTMGKVDKTLFVLKHGDNQLFV 1042
Score = 28.5 bits (62), Expect(3) = 7e-20
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ +D++ TF+ + + +
Sbjct: 916 LVAQGFTQVESLDFDETFASVARIE 940
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 72.4 bits (176), Expect(3) = 1e-19
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
LDV NAFL G+L+E+VY+ QPPGFE+ P+++CKL KA+YGLKQAP
Sbjct: 1035 LDVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAP 1081
Score = 37.7 bits (86), Expect(3) = 1e-19
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ L+ ++ +GF S+ D+SLF + + +F+
Sbjct: 1077 LKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFV 1118
Score = 31.6 bits (70), Expect(3) = 1e-19
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFDT 83
LVAKGF Q GIDY TFS + K T
Sbjct: 992 LVAKGFKQRYGIDYEDTFSPVVKAAT 1017
>gb|AAM23248.1|AC092553_14 Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
gi|21326491|gb|AAM47619.1|AC122147_8 Putative copia-type
pol polyprotein [Oryza sativa Japonica Group]
Length = 845
Score = 72.4 bits (176), Expect(3) = 2e-19
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 82 LDVNNAFLQGYLDEDVYITQPPGFENPFYPSHICKLQKAIYGLKQAP 222
+DV + FL G++ E+VY+ QPPGFENP +P+H+ KL KA+YGLKQAP
Sbjct: 443 MDVKSDFLNGFIQEEVYVKQPPGFENPEFPNHVFKLSKALYGLKQAP 489
Score = 38.5 bits (88), Expect(3) = 2e-19
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 207 LKTSPSAWYNELNNHMLSMGFFKSEFDSSLFIVKNSVVSIFL 332
LK +P AWY+ N +L+ GF + D +LF++K+ +F+
Sbjct: 485 LKQAPRAWYDRFKNFLLAKGFSMGKVDKTLFVLKHGDNQLFV 526
Score = 30.4 bits (67), Expect(3) = 2e-19
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 6 LVAKGFTQ*SGIDYNSTFSQIGKFD 80
LVA+GFTQ G+D++ TF+ + + +
Sbjct: 400 LVAQGFTQVEGLDFDETFAHVARVE 424