BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00023278
         (1242 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD39354.2| OSJNBa0059H15.5 [Oryza sativa Japonica Group]         121   6e-78
gb|ABA96940.1| retrotransposon protein, putative, Ty3-gypsy subc...   127   9e-61
gb|AAT93968.1| putative polyprotein [Oryza sativa Japonica Group...   123   2e-60
gb|ABA98232.1| retrotransposon protein, putative, Ty3-gypsy subc...   125   3e-60
emb|CAE02265.2| OSJNBb0049I21.5 [Oryza sativa Japonica Group]         123   6e-60
emb|CAH66529.1| H0502B11.9 [Oryza sativa Indica Group]                123   1e-59
emb|CAD40212.2| OSJNBa0019J05.10 [Oryza sativa Japonica Group]        123   2e-59
dbj|BAB62635.1| putative polyprotein [Oryza sativa Japonica Grou...   123   2e-59
gb|AAT69667.1| putative polyprotein [Oryza sativa Japonica Group]     123   2e-59
gb|AAT47081.1| putative polyprotein [Oryza sativa Japonica Group]     123   2e-59
emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa Japonica Group] gi...   123   2e-59
gb|ABA97776.1| retrotransposon protein, putative, Ty3-gypsy subc...   123   2e-59
gb|AAO38446.1| putative gag-pol polyprotein [Oryza sativa Japoni...   123   2e-59
gb|ABA93898.1| retrotransposon protein, putative, Ty3-gypsy subc...   122   4e-59
gb|AAP55099.2| retrotransposon protein, putative, Ty3-gypsy subc...   123   5e-59
gb|AAL86492.1|AC077693_31 putative polyprotein [Oryza sativa Jap...   123   5e-59
gb|ABA98260.1| retrotransposon protein, putative, Ty3-gypsy subc...   121   6e-59
gb|AAV59338.1| hypothetical protein [Oryza sativa Japonica Group]     129   1e-58
gb|ABA94813.1| retrotransposon protein, putative, Ty3-gypsy subc...   122   1e-58
emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa Indica Group]           119   3e-58

>emb|CAD39354.2| OSJNBa0059H15.5 [Oryza sativa Japonica Group]
          Length = 1466

 Score =  121 bits (304), Expect(4) = 6e-78
 Identities = 57/118 (48%), Positives = 81/118 (68%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 823  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTHVRSFLGLAGYYRRFIENFSKIAKPMTQL 882

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  +   +Y DAS +GLG +LM+ G
Sbjct: 883  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKGFQIYCDASRQGLGCVLMQDG 940



 Score =  110 bits (274), Expect(4) = 6e-78
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 653  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 712

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 713  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 771

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 772  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 823



 Score = 84.7 bits (208), Expect(4) = 6e-78
 Identities = 36/60 (60%), Positives = 49/60 (81%)
 Frame = -3

Query: 181  EDRKVVAYISKKLKDHEQNYPTHDLELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            +D KVV+Y S++L+ HE NYPTHDLELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 938  QDGKVVSYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 997



 Score = 45.4 bits (106), Expect(4) = 6e-78
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 582  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 626


>gb|ABA96940.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1112

 Score =  127 bits (320), Expect(3) = 9e-61
 Identities = 59/118 (50%), Positives = 84/118 (71%)
 Frame = -1

Query: 525 FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
           FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 573 FLGHIVNAQGVAVDPANVESVTEWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 632

Query: 345 TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
            +K  +F W+ +C RSF ELK  L S  VLTL +  ++  +Y DAS +GLG +LMK G
Sbjct: 633 LKKEEKFIWSAECNRSFEELKRRLVSAPVLTLPDQTKDFQVYCDASRQGLGCVLMKDG 690



 Score =  110 bits (274), Expect(3) = 9e-61
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 403  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 462

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 463  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 521

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 522  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 573



 Score = 45.4 bits (106), Expect(3) = 9e-61
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 332  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 376



 Score =  117 bits (294), Expect = 8e-24
 Identities = 103/335 (30%), Positives = 147/335 (43%), Gaps = 37/335 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 442  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 496

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 497  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 554

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGS----------SEGEGNDPLDITQNIN*S 428
                   +   F           +LG  +N            S  E   P  +TQ +   
Sbjct: 555  HQLYAKFSKCDF-----WLKEVQFLGHIVNAQGVAVDPANVESVTEWTPPRTVTQ-VRSF 608

Query: 427  T*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA----------- 281
              L GY R   E    F  +      +  K  +     E    F  +K            
Sbjct: 609  LGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLTLP 665

Query: 280  --LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHDL 107
                DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHDL
Sbjct: 666  DQTKDFQVYCDASRQGLGCVLM-------------KDGKVVSYASRQLRSHEGNYPTHDL 712

Query: 106  ELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            ELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 713  ELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 747


>gb|AAT93968.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51038205|gb|AAT94008.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1500

 Score =  123 bits (309), Expect(3) = 2e-60
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 761  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 820

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 821  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 878



 Score =  110 bits (274), Expect(3) = 2e-60
 Identities = 76/172 (44%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 591  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 650

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GYYQ+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 651  KIDLRSGYYQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FVNLMNKVFMEFLD 709

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
                +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 710  KIVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 761



 Score = 48.5 bits (114), Expect(3) = 2e-60
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KLG  P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 520  KTTKKLGDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 564



 Score =  114 bits (285), Expect = 8e-23
 Identities = 100/336 (29%), Positives = 147/336 (43%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*----------EKKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 630  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYYQLRIREEDIPKTAFITRYGLFECTV 684

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDK VV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 685  MSFGLTNA--PAFFVNLMNKVFMEFLDKIVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 742

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 743  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 795

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 796  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 852

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 853  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 899

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 900  LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 935


>gb|ABA98232.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1522

 Score =  125 bits (313), Expect(3) = 3e-60
 Identities = 57/118 (48%), Positives = 84/118 (71%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 783  FLGHIVNAQGVAVDPANVESVTEWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 842

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VLTL +  ++  +Y DAS +G+G +LM+ G
Sbjct: 843  LKKEEKFIWSAECNRSFEELKRRLVSAPVLTLPDQTKDFQVYCDASRQGVGCVLMQDG 900



 Score =  110 bits (276), Expect(3) = 3e-60
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 613  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 672

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 673  KIDLRSGYHQLRIREEDIPKTAFITRYGSFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 731

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 732  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 783



 Score = 45.4 bits (106), Expect(3) = 3e-60
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 542  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 586



 Score =  117 bits (292), Expect = 1e-23
 Identities = 102/335 (30%), Positives = 148/335 (44%), Gaps = 37/335 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +  + +  +
Sbjct: 652  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGSFECTV 706

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 707  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 764

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGS----------SEGEGNDPLDITQNIN*S 428
                   +   F           +LG  +N            S  E   P  +TQ +   
Sbjct: 765  HQLYAKFSKCDF-----WLKEVQFLGHIVNAQGVAVDPANVESVTEWTPPRTVTQ-VRSF 818

Query: 427  T*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA----------- 281
              L GY R   E    F  +      +  K  +     E    F  +K            
Sbjct: 819  LGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLTLP 875

Query: 280  --LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHDL 107
                DF +  D ++   G + +             +D K+V+Y S++L+ HE NYPTHDL
Sbjct: 876  DQTKDFQVYCDASRQGVGCVLM-------------QDGKLVSYASRQLRPHEGNYPTHDL 922

Query: 106  ELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            ELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 923  ELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 957


>emb|CAE02265.2| OSJNBb0049I21.5 [Oryza sativa Japonica Group]
          Length = 1644

 Score =  123 bits (309), Expect(3) = 6e-60
 Identities = 57/118 (48%), Positives = 84/118 (71%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG VI+  G+++DP KV+ +T W +PK+ TE+RS+LG+  YYRRFI+ FSM A P+TQL
Sbjct: 830  FLGHVISAGGVAVDPTKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSMIARPMTQL 889

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C+ SF +LK  LTS  +L L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 890  LKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDG 947



 Score =  114 bits (284), Expect(3) = 6e-60
 Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            ++ PS+SP GAPVLFV+KKDG+++MC+DYR LN V +K K P             +  +S
Sbjct: 660  FVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFS 719

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q++IR  DI  TAF+TRYG Y+F VM  GLTNA AY  ++L   V  D   
Sbjct: 720  KIDLRSGYHQLKIRTGDIPKTAFSTRYGLYKFTVMSFGLTNAPAY-FMNLMNKVFMDYLD 778

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F           +         + KL +HKLYAKFSK EF +  V F
Sbjct: 779  KFMVVFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFWLKEVAF 830



 Score = 43.1 bits (100), Expect(3) = 6e-60
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = -1

Query: 1197 PVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPIS 1087
            P+V++F DV PE+L   PP+R +EF I+  P   PIS
Sbjct: 598  PIVQQFPDVFPEDLPGMPPDRDIEFIIDLIPGTAPIS 634



 Score =  117 bits (293), Expect = 1e-23
 Identities = 101/322 (31%), Positives = 143/322 (44%), Gaps = 24/322 (7%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +   +   +
Sbjct: 699  KYPLPRIDDLFDQLKGAKVFS-----KIDLRSGYHQLKIRTGDIPKTAFSTRYGLYKFTV 753

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P +    M  +F  YLDKF+V+FIDDIL+YS + E H +HL+ VL   R 
Sbjct: 754  MSFGLTNA--PAYFMNLMNKVFMDYLDKFMVVFIDDILIYSKDEEEHAEHLRLVLEKLRK 811

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEG----------EGNDPLDITQNIN*S 428
                   +   F           +LG  ++               E   P  +T+ I   
Sbjct: 812  HKLYAKFSKCEF-----WLKEVAFLGHVISAGGVAVDPTKVEAVTEWKAPKSVTE-IRSF 865

Query: 427  T*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKALADFDISFDIN 248
              L GY R   E    F  +      +  K  +    E+  E F  +K          + 
Sbjct: 866  LGLAGYYRRFIE---GFSMIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLP 922

Query: 247  QSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHDLELAAIIFALKKWR 68
               +  +      R      + +D KVVAY S++L+ HE+NYPTHDLELAA++ ALK WR
Sbjct: 923  DIRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWR 982

Query: 67   HYLYRAKYKIFIDHKSLKYLFS 2
            HYL      I+ DHKSLKY+F+
Sbjct: 983  HYLIGNHCDIYTDHKSLKYIFT 1004


>emb|CAH66529.1| H0502B11.9 [Oryza sativa Indica Group]
          Length = 1450

 Score =  123 bits (309), Expect(3) = 1e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 711  FLGHIVNSQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 770

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 771  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 828



 Score =  110 bits (275), Expect(3) = 1e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 541  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 600

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 601  KIDLQSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 659

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 660  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 711



 Score = 45.4 bits (106), Expect(3) = 1e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 470  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 514



 Score =  118 bits (295), Expect = 6e-24
 Identities = 102/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 580  KYPLPRIDDLFDQLKGATVFS-----KIDLQSGYHQLRIREEDIPKTAFITRYGLFECTV 634

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 635  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 692

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  S+G   DP ++              +  
Sbjct: 693  HQLYAKFSKCDF-----WLKEVQFLGHIVN--SQGVAVDPANVESVTKWTPPRTVTQVRS 745

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 746  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 802

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 803  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 849

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 850  LELAAVVHALKIWRHYLISNRCEVYTDHKSLKYIFT 885


>emb|CAD40212.2| OSJNBa0019J05.10 [Oryza sativa Japonica Group]
          Length = 1525

 Score =  123 bits (309), Expect(3) = 2e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 786  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 845

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 846  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 903



 Score =  110 bits (274), Expect(3) = 2e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 616  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 675

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 676  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 734

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 735  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 786



 Score = 45.4 bits (106), Expect(3) = 2e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 545  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 589



 Score =  117 bits (292), Expect = 1e-23
 Identities = 101/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 655  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 709

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 710  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 767

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 768  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 820

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 821  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 877

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 878  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 924

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 925  LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 960


>dbj|BAB62635.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza
            sativa Japonica Group] gi|52353682|gb|AAU44248.1|
            putative polyprotein [Oryza sativa Japonica Group]
          Length = 1524

 Score =  123 bits (309), Expect(3) = 2e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 785  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 844

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 845  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 902



 Score =  110 bits (274), Expect(3) = 2e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 615  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 674

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 675  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 733

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 734  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 785



 Score = 45.4 bits (106), Expect(3) = 2e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 544  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 588



 Score =  117 bits (292), Expect = 1e-23
 Identities = 101/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 654  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 708

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 709  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 766

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 767  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 819

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 820  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 876

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 877  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 923

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 924  LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 959


>gb|AAT69667.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1524

 Score =  123 bits (309), Expect(3) = 2e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 785  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 844

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 845  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 902



 Score =  110 bits (274), Expect(3) = 2e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 615  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 674

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 675  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 733

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 734  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 785



 Score = 45.4 bits (106), Expect(3) = 2e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 544  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 588



 Score =  117 bits (292), Expect = 1e-23
 Identities = 101/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 654  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 708

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 709  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 766

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 767  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 819

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 820  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 876

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 877  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 923

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 924  LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 959


>gb|AAT47081.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1524

 Score =  123 bits (309), Expect(3) = 2e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 785  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 844

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 845  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 902



 Score =  110 bits (274), Expect(3) = 2e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 615  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 674

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 675  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 733

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 734  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 785



 Score = 45.4 bits (106), Expect(3) = 2e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 544  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 588



 Score =  117 bits (292), Expect = 1e-23
 Identities = 101/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 654  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 708

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 709  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 766

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 767  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 819

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 820  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 876

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 877  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 923

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 924  LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 959


>emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa Japonica Group]
            gi|38347085|emb|CAE05109.2| OSJNBa0001M07.5 [Oryza sativa
            Japonica Group]
          Length = 1471

 Score =  123 bits (309), Expect(3) = 2e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 732  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 791

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 792  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 849



 Score =  110 bits (274), Expect(3) = 2e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 562  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 621

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 622  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 680

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 681  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 732



 Score = 45.4 bits (106), Expect(3) = 2e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 491  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 535



 Score =  117 bits (292), Expect = 1e-23
 Identities = 101/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 601  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 655

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 656  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 713

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 714  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 766

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 767  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 823

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 824  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 870

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 871  LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 906


>gb|ABA97776.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1406

 Score =  123 bits (309), Expect(3) = 2e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 835  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 894

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 895  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 952



 Score =  110 bits (274), Expect(3) = 2e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 665  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 724

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 725  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 783

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 784  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 835



 Score = 45.4 bits (106), Expect(3) = 2e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 594  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 638



 Score =  117 bits (293), Expect = 1e-23
 Identities = 101/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 704  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 758

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 759  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 816

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 817  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 869

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 870  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 926

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 927  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 973

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 974  LELAAVVHALKIWRHYLISNRCEVYTDHKSLKYIFT 1009


>gb|AAO38446.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|62733520|gb|AAX95637.1| Reverse transcriptase
           (RNA-dependent DNA polymerase), putative [Oryza sativa
           Japonica Group] gi|108710593|gb|ABF98388.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1229

 Score =  123 bits (309), Expect(3) = 2e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525 FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
           FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 490 FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 549

Query: 345 TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
            +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 550 LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 607



 Score =  110 bits (274), Expect(3) = 2e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 320  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 379

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 380  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 438

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 439  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 490



 Score = 45.4 bits (106), Expect(3) = 2e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 249  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 293



 Score =  117 bits (292), Expect = 1e-23
 Identities = 101/336 (30%), Positives = 148/336 (44%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 359  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 413

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 414  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 471

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 472  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 524

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 525  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 581

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 582  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 628

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 629  LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFT 664


>gb|ABA93898.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 879

 Score =  122 bits (306), Expect(3) = 4e-59
 Identities = 55/118 (46%), Positives = 84/118 (71%)
 Frame = -1

Query: 525 FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
           FLG V++  G+++DPAK++ +T W +PK  TE+RS+LG+  YYRRFI+ FS  A P+TQL
Sbjct: 613 FLGHVVSAGGVAVDPAKIEAVTEWKAPKFVTEIRSFLGLAGYYRRFIEGFSKMARPMTQL 672

Query: 345 TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
            +K  +F+W+ +C+ SF +LK  LTS  +L L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 673 LKKEKKFEWSEQCQESFEQLKEKLTSAPILVLPDNRKDFVIYCDASRQGLGGVLMQDG 730



 Score =  115 bits (287), Expect(3) = 4e-59
 Identities = 75/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            ++HPS+SP GAPVLFV+KKDG+++MC+DYR LN V +K K P             +  +S
Sbjct: 443  FVHPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFS 502

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q++IR  DI  TAF+TRYG YEF VM  GLTNA AY  + L   V  +   
Sbjct: 503  KIDLRSGYHQLKIRTGDIPKTAFSTRYGLYEFTVMSFGLTNALAY-FMYLMNKVFMEYLD 561

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F           +         + KL +HKLYAKFSK EF +  V F
Sbjct: 562  EFVVVFIDDILIYSKDEEEHAKHLRLVLEKLRKHKLYAKFSKCEFWLKEVAF 613



 Score = 40.4 bits (93), Expect(3) = 4e-59
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = -1

Query: 1194 VVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPIS 1087
            VV+ F DV PE+L   PP+R VEF I+  P   PIS
Sbjct: 382  VVQRFPDVFPEDLPGMPPDRDVEFIIDLIPGTTPIS 417



 Score =  119 bits (297), Expect = 3e-24
 Identities = 105/321 (32%), Positives = 146/321 (45%), Gaps = 23/321 (7%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +   ++  +
Sbjct: 482  KYPLPRIDDLFDQLKGAKVFS-----KIDLRSGYHQLKIRTGDIPKTAFSTRYGLYEFTV 536

Query: 745  MSSLLCH-LD*PMH-MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRSIS 572
            MS  L + L   M+ M  +F  YLD+FVV+FIDDIL+YS + E H KHL+ VL   R   
Sbjct: 537  MSFGLTNALAYFMYLMNKVFMEYLDEFVVVFIDDILIYSKDEEEHAKHLRLVLEKLRKHK 596

Query: 571  CMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDI-----------TQNIN*ST 425
                 +   F           +LG  +  S+ G   DP  I              I    
Sbjct: 597  LYAKFSKCEF-----WLKEVAFLGHVV--SAGGVAVDPAKIEAVTEWKAPKFVTEIRSFL 649

Query: 424  *LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKALADFDISFDINQ 245
             L GY R   E    F  +      +  K  +    E+  E F  +K          +  
Sbjct: 650  GLAGYYRRFIE---GFSKMARPMTQLLKKEKKFEWSEQCQESFEQLKEKLTSAPILVLPD 706

Query: 244  SERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHDLELAAIIFALKKWRH 65
            + +  +      R      + +D KVVAY S++L+ HE+NYPTHDLELAA++ ALK WRH
Sbjct: 707  NRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRH 766

Query: 64   YLYRAKYKIFIDHKSLKYLFS 2
            YL      I+ DHKSLKY+F+
Sbjct: 767  YLIGNHCDIYTDHKSLKYIFT 787


>gb|AAP55099.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1565

 Score =  123 bits (309), Expect(3) = 5e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 826  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 885

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 886  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 943



 Score =  108 bits (270), Expect(3) = 5e-59
 Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 656  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 715

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 716  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 774

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
                +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 775  KIVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 826



 Score = 45.4 bits (106), Expect(3) = 5e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 585  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 629



 Score =  115 bits (287), Expect = 5e-23
 Identities = 100/336 (29%), Positives = 147/336 (43%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 695  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 749

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDK VV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 750  MSFGLTNA--PAFFMNLMNKVFMEFLDKIVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 807

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 808  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 860

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 861  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 917

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 918  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 964

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 965  LELAAVVHALKIWRHYLISNRCEVYTDHKSLKYIFT 1000


>gb|AAL86492.1|AC077693_31 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1524

 Score =  123 bits (309), Expect(3) = 5e-59
 Identities = 57/118 (48%), Positives = 83/118 (70%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 785  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQL 844

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 845  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 902



 Score =  108 bits (270), Expect(3) = 5e-59
 Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 615  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 674

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 675  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 733

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
                +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 734  KIVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 785



 Score = 45.4 bits (106), Expect(3) = 5e-59
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI
Sbjct: 544  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPI 588



 Score =  115 bits (287), Expect = 5e-23
 Identities = 100/336 (29%), Positives = 147/336 (43%), Gaps = 38/336 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 654  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 708

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDK VV+FIDDIL+YS + E HE+HL+ VL   + 
Sbjct: 709  MSFGLTNA--PAFFMNLMNKVFMEFLDKIVVVFIDDILIYSKSEEEHEQHLRLVLEKLKE 766

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDITQ-----------NIN* 431
                   +   F           +LG  +N  ++G   DP ++              +  
Sbjct: 767  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 819

Query: 430  ST*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA---------- 281
               L GY R   E    F  +      +  K  +     E    F  +K           
Sbjct: 820  FLGLAGYYRRFIE---NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLIL 876

Query: 280  ---LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHD 110
                 DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHD
Sbjct: 877  PDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTHD 923

Query: 109  LELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            LELAA++ ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 924  LELAAVVHALKIWRHYLISNRCEVYTDHKSLKYIFT 959


>gb|ABA98260.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1360

 Score =  121 bits (303), Expect(3) = 6e-59
 Identities = 56/118 (47%), Positives = 82/118 (69%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++ S  A P+TQL
Sbjct: 816  FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENISKIAKPMTQL 875

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C RSF ELK  L S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 876  LKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 933



 Score =  110 bits (274), Expect(3) = 6e-59
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 646  YIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 705

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA A+  ++L   V  +   
Sbjct: 706  KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF-FMNLMNKVFMEFLD 764

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 765  KFVVVFIDDILIYSKSEEEHEQHLQLVLEKLKEHQLYAKFSKCDFWLKEVQF 816



 Score = 45.8 bits (107), Expect(3) = 6e-59
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPISLTLISDGTGRV*GV 1045
            K   KL   P+V E+ +V P++LTT PP+R +EF I+  P   PI     S G   +  V
Sbjct: 575  KTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPYSMGANELAEV 634

Query: 1044 ER 1039
            ++
Sbjct: 635  KK 636



 Score =  116 bits (291), Expect = 2e-23
 Identities = 101/337 (29%), Positives = 150/337 (44%), Gaps = 39/337 (11%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 685  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFITRYGLFECTV 739

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  +LDKFVV+FIDDIL+YS + E HE+HLQ VL   + 
Sbjct: 740  MSFGLTNA--PAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLQLVLEKLKE 797

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDIT--------QNIN*ST* 422
                   +   F           +LG  +N  ++G   DP ++         + +     
Sbjct: 798  HQLYAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRS 850

Query: 421  LLG----YDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA--------- 281
             LG    Y R +  I K    +      +  K  +     E    F  +K          
Sbjct: 851  FLGLAGYYRRFIENISK----IAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLI 906

Query: 280  ----LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTH 113
                  DF +  D ++   G + +             +D KVV+Y S++L+ HE NYPTH
Sbjct: 907  LPDQTKDFQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRPHEGNYPTH 953

Query: 112  DLELAAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            DLELAA++ ALK W+HYL   + +++ DHKSLKY+F+
Sbjct: 954  DLELAAVVHALKIWQHYLISNRCEVYTDHKSLKYIFT 990


>gb|AAV59338.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 1238

 Score =  129 bits (323), Expect(3) = 1e-58
 Identities = 58/118 (49%), Positives = 84/118 (71%)
 Frame = -1

Query: 525 FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
           FLG ++  +G+++DPA V+ +T WT P+T T+VRS+LG+  YYRRFI++FS  A P+TQL
Sbjct: 499 FLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIQNFSKIAKPMTQL 558

Query: 345 TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
            +K  +F W+ +C RSF ELK WL S  VL L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 559 LKKEEKFIWSAECNRSFEELKRWLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDG 616



 Score =  103 bits (256), Expect(3) = 1e-58
 Identities = 73/172 (42%), Positives = 95/172 (55%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVKKVPTSTH**AL*ATLRSGC-YS 834
            YI  STSP GAPV+FV KKD T +MC+DYR LN V +K          L   L+    +S
Sbjct: 329  YIRLSTSPWGAPVIFVEKKDKTKRMCVDYRTLNEVTIKNEYPLPRIDDLFDQLKGATVFS 388

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E  VM  GLTNA  +  ++L   V  +   
Sbjct: 389  KIDLQSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPDF-FMNLMNKVFMEFLD 447

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         S +         + KL EH+LYAKFSK +F +  V F
Sbjct: 448  KFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF 499



 Score = 44.3 bits (103), Expect(3) = 1e-58
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -1

Query: 1224 KAEVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            K   KL   P+V E+  V P++LTT PP+R +EF I+  P   PI
Sbjct: 258  KTTKKLEDIPIVREYPKVFPDDLTTMPPKRDIEFRIDLVPGTAPI 302



 Score =  117 bits (293), Expect = 1e-23
 Identities = 99/330 (30%), Positives = 148/330 (44%), Gaps = 33/330 (10%)
 Frame = -3

Query: 892  YPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGIM 743
            YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +M
Sbjct: 369  YPLPRIDDLFDQLKGATVFS-----KIDLQSGYHQLRIREEDIPKTAFITRYGLFECTVM 423

Query: 742  SSLLCHL-D*PMH-MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRSISC 569
            S  L +  D  M+ M  +F  +LDKFVV+FIDDIL+YS + E HE+HL+ VL   +    
Sbjct: 424  SFGLTNAPDFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQL 483

Query: 568  MPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDIT--------QNIN*ST*LLG 413
                +   F           +LG  +N  ++G   DP ++         + +      LG
Sbjct: 484  YAKFSKCDF-----WLKEVQFLGHIVN--AQGVAVDPANVESVTKWTPPRTVTQVRSFLG 536

Query: 412  YDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKA-------------LAD 272
                     + F  +      +  K  +     E    F  +K                D
Sbjct: 537  LAGYYRRFIQNFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRWLVSAPVLILPDQTKD 596

Query: 271  FDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHDLELAAI 92
            F +  D ++   G + +             +D KVV+Y S++L+ HE NYPTHDLELAA+
Sbjct: 597  FQVYCDASRQGLGCVLM-------------QDGKVVSYASRQLRSHEGNYPTHDLELAAV 643

Query: 91   IFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            + ALK WRHYL   + +++ DHKSLKY+F+
Sbjct: 644  VHALKIWRHYLIGNRCEVYTDHKSLKYIFT 673


>gb|ABA94813.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1712

 Score =  122 bits (307), Expect(3) = 1e-58
 Identities = 57/118 (48%), Positives = 84/118 (71%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG VI+  G+++DPAKV+ +T W +PK+ TE+RS+LG+  YYRRFI+ FS  A P+TQL
Sbjct: 1081 FLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKIARPMTQL 1140

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  +F W+ +C+ SF +LK  LTS  +L L +  ++  +Y DAS +GLG +LM+ G
Sbjct: 1141 LKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDG 1198



 Score =  110 bits (275), Expect(3) = 1e-58
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            ++ PS+SP GAPVLFV+KKDG++++C+DYR LN V +K K P             +  +S
Sbjct: 911  FVRPSSSPWGAPVLFVKKKDGSMRICVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFS 970

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
             +DL  GY+Q++IR +DI  TAF+TRYG YEF VM  GLTNA AY  ++L   V  D   
Sbjct: 971  TIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAY-FMNLMNKVFMDYLD 1029

Query: 653  *YSCLFT*P*ST*KTSSKG--------VVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F           +         + KL +HKLY KFSK EF +  V F
Sbjct: 1030 KFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYKKFSKCEFWLKEVAF 1081



 Score = 42.7 bits (99), Expect(3) = 1e-58
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = -1

Query: 1197 PVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPIS 1087
            PVV+ F DV PE+L   PP+R +EF I+  P   PIS
Sbjct: 849  PVVQRFPDVFPEDLPGMPPDRDIEFIIDLIPGTTPIS 885



 Score =  117 bits (293), Expect = 1e-23
 Identities = 101/322 (31%), Positives = 143/322 (44%), Gaps = 24/322 (7%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA            ++SG            K  F  +   ++  +
Sbjct: 950  KYPLPRIDDLFDQLKGAKVFSTID-----LRSGYHQLKIRTEDIPKTAFSTRYGLYEFTV 1004

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P +    M  +F  YLDKFVV+FIDDIL+YS + E H +HL+ VL   R 
Sbjct: 1005 MSFGLTNA--PAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRK 1062

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEG----------EGNDPLDITQNIN*S 428
                   +   F           +LG  ++               E   P  +T+ I   
Sbjct: 1063 HKLYKKFSKCEF-----WLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTE-IRSF 1116

Query: 427  T*LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IKALADFDISFDIN 248
              L GY R   E    F  +      +  K  +    E+  E F  +K          + 
Sbjct: 1117 LGLAGYYRRFIE---GFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLP 1173

Query: 247  QSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHDLELAAIIFALKKWR 68
               +  +      R      + +D KVVAY S++L+ HE+NYPTHDLELAA++ ALK WR
Sbjct: 1174 DIRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWR 1233

Query: 67   HYLYRAKYKIFIDHKSLKYLFS 2
            HYL      I+ DHKSLKY+F+
Sbjct: 1234 HYLIGNHCDIYTDHKSLKYIFT 1255


>emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa Indica Group]
          Length = 1433

 Score =  119 bits (299), Expect(3) = 3e-58
 Identities = 57/118 (48%), Positives = 81/118 (68%)
 Frame = -1

Query: 525  FLGRVIT*EGISMDPAKVKVMTHWTSPKTSTEVRSYLGMTEYYRRFIKDFSMFAGPLTQL 346
            FLG VI+  G+++DP+ V+ +  W  PKT +EVRS+LG+  YYRRFI++FS  A P+T+L
Sbjct: 742  FLGHVISSGGVAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYYRRFIENFSKIARPMTRL 801

Query: 345  TRKATEFKWTRKCERSFYELKHWLTSTLVLTLTNPNEELSLYTDASGEGLGVLLMKTG 172
             +K  ++KWT  CERSF ELK  L +  VL L +  ++  +Y DAS  GLG +LM+ G
Sbjct: 802  LQKDVKYKWTEDCERSFQELKKRLVTAPVLILPDSRKDFQVYCDASRHGLGCVLMQEG 859



 Score =  112 bits (281), Expect(3) = 3e-58
 Identities = 75/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%)
 Frame = -2

Query: 1010 YIHPSTSP*GAPVLFVRKKDGTLKMCIDYRGLNSVIVK-KVPTSTH**AL*ATLRSGCYS 834
            YI PSTSP GAPV+FV KKD T +MC+DYR LN V +K K P             +  +S
Sbjct: 572  YIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFS 631

Query: 833  KLDLS*GYYQVRIREKDILMTAFNTRYGHYEFVVMPSGLTNAHAYDLLSLPG*VCCDLH* 654
            K+DL  GY+Q+RIRE+DI  TAF TRYG +E +VM  GLTNA A+  ++L   V  +   
Sbjct: 632  KIDLRSGYHQLRIREEDIPKTAFTTRYGLFECIVMSFGLTNAPAF-FMNLMNKVFMEYLD 690

Query: 653  *YSCLFT*P*ST*KTSSK--------GVVKLSEHKLYAKFSKYEF*MN*VTF 522
             +  +F         + +         + KL EH+LYAKFSK EF ++ V F
Sbjct: 691  KFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKF 742



 Score = 42.4 bits (98), Expect(3) = 3e-58
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = -1

Query: 1218 EVKLGTEPVVEEFVDVIPEELTTFPPERGVEFSIEFEPCAEPI 1090
            +V L   P+V+++ DV PE+L   PP+R +EF I+  P   PI
Sbjct: 503  QVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPI 545



 Score =  119 bits (298), Expect = 3e-24
 Identities = 102/333 (30%), Positives = 147/333 (44%), Gaps = 35/333 (10%)
 Frame = -3

Query: 895  RYPLPLIDELFEQL*GADAIPNWT*VKDTIKSG*E----------KKIF**QLSTHDMGI 746
            +YPLP ID+LF+QL GA         K  ++SG            K  F  +    +  +
Sbjct: 611  KYPLPRIDDLFDQLKGATVFS-----KIDLRSGYHQLRIREEDIPKTAFTTRYGLFECIV 665

Query: 745  MSSLLCHLD*PMH----MRMIFCPYLDKFVVIFIDDILVYSLNPEAHEKHLQRVL*NCRS 578
            MS  L +   P      M  +F  YLDKFVV+FIDDIL+YS   E HE+HL+  L   R 
Sbjct: 666  MSFGLTNA--PAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLRE 723

Query: 577  ISCMPSSANMSFR*IK*LFGTCYYLGRDLNGSSEGEGNDPLDIT--------QNIN*ST* 422
                   +   F           +LG  +  SS G   DP ++         + ++    
Sbjct: 724  HQLYAKFSKCEF-----WLSEVKFLGHVI--SSGGVAVDPSNVESVLSWKQPKTVSEVRS 776

Query: 421  LLGYDRILSEIHKRFFYVCWTFNAIN*KSNRV*MDEEV*EEFL*IK-------------A 281
             LG         + F  +      +  K  +    E+    F  +K             +
Sbjct: 777  FLGLAGYYRRFIENFSKIARPMTRLLQKDVKYKWTEDCERSFQELKKRLVTAPVLILPDS 836

Query: 280  LADFDISFDINQSERGVIPIHRCFRGRPRSPVDEDRKVVAYISKKLKDHEQNYPTHDLEL 101
              DF +  D ++   G + +             ++ KVVAY S++L+ HE NYPTHDLEL
Sbjct: 837  RKDFQVYCDASRHGLGCVLM-------------QEGKVVAYASRQLRPHENNYPTHDLEL 883

Query: 100  AAIIFALKKWRHYLYRAKYKIFIDHKSLKYLFS 2
            AA++ ALK WRHYLY    +I+ DHKSLKY+F+
Sbjct: 884  AAVVHALKIWRHYLYGNHTEIYTDHKSLKYIFT 916