BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00021246
         (278 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe...   104   1e-20
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        103   2e-20
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    99   4e-19
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    99   8e-19
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    97   2e-18
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         97   3e-18
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    96   5e-18
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    96   5e-18
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...    96   6e-18
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          96   6e-18
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]      96   6e-18
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]            96   6e-18
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]            96   6e-18
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      96   6e-18
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    95   8e-18
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...    95   8e-18
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      95   1e-17
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...    94   1e-17
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    94   2e-17
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      94   2e-17

>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
           erythrorhizon]
          Length = 244

 Score =  104 bits (260), Expect = 1e-20
 Identities = 49/91 (53%), Positives = 63/91 (69%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SEKGL  L  Q LL   K + ++FC+H V GK H+L FF S HKS  +LDYVH DLW
Sbjct: 116 GHMSEKGLSLLSGQGLLKNMKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLLDYVHTDLW 175

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP KV + DG+ YF + VDD+SR+  ++ LK
Sbjct: 176 GPAKVNSKDGSWYFVTFVDDYSRYAWIYFLK 206


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  103 bits (257), Expect = 2e-20
 Identities = 46/91 (50%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+S KGL  L KQ LL GD+I  L+FC++C+ GK H+  F K  H S  VLDY H D W
Sbjct: 431 GHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVLDYAHIDHW 490

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +V +  G  YF S++DD+SR V +++LK
Sbjct: 491 GPAQVPSLSGGRYFMSLIDDYSRKVWIYILK 521


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 43/91 (47%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GHIS +GL  L KQ +L   K+T L FC+HCV GK  ++ F K+ H++   LDY+H DLW
Sbjct: 399 GHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLW 458

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +V +  G  YF +++DD+SR V ++ LK
Sbjct: 459 GPSRVPSIGGARYFLTLIDDYSRKVWIYFLK 489


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 42/91 (46%), Positives = 63/91 (69%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+ E+G+  L K++LL G K+ SL+FC+HCV GK H+  F K+ H++   LDY+H D W
Sbjct: 419 GHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCW 478

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +V +  G  +F SI+DD+SR   V+++K
Sbjct: 479 GPCRVESLGGCRFFVSIIDDYSRMTWVYMMK 509


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 44/91 (48%), Positives = 62/91 (68%)
 Frame = +3

Query: 3    GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
            GH+SEKGL  L KQ LL+G +   L FC+ CV+GKQ ++ F   +H ++ VL+Y+H DLW
Sbjct: 753  GHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLW 812

Query: 183  GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
            GP  V ++ G  Y+ + +DDFSR V V+ LK
Sbjct: 813  GPSPVESHSGCRYYVTFIDDFSRKVWVYFLK 843


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 44/91 (48%), Positives = 60/91 (65%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I+ L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 441 GHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 500

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 501 GPARKTSFGGARYMMTIVDDYSRKVWPYFLK 531


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 402 GHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 461

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 462 GPARKTSFGGARYMMTIVDDYSRKVWPYFLK 492


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1262

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 456 GHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 515

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 516 GPARKTSFGGARYMMTIVDDYSRKVWPYFLK 546


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 380 GHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLW 439

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 440 GPARKRSFGGARYMMTIVDDYSRKVWPYFLK 470


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 273 GHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 332

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 333 GPARKTSFGGARYIMTIVDDYSRKVWPYFLK 363


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSF--FKSTHKSSFVLDYVHYD 176
           GH+S++GL  LHK+  L+G    +L+FC +C LGKQ ++SF    S +KS  VLDY+H D
Sbjct: 400 GHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTD 459

Query: 177 LWGPDKVLTYDGNVYFFSIVDDFSRHV*VFLLKT 278
           +WGP   ++  G  YF S +DDFSR V +F +KT
Sbjct: 460 VWGPSATISKGGARYFVSFIDDFSRKVWIFFMKT 493


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 43/91 (47%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ +L+G  I  L FC+HC+ GK H++ F  STH +  +LDYVH DLW
Sbjct: 262 GHMSEIGLAELSKRGMLDGQSIGKLIFCEHCIFGKHHRVKFNTSTHTTEGILDYVHSDLW 321

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP    ++ G  Y  +I+DD+SR V  + LK
Sbjct: 322 GPTCKTSFGGARYMMTIIDDYSRKVWPYFLK 352


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 273 GHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 332

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 333 GPARKTSFGGARYIMTIVDDYSRKVWPYFLK 363


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 44/91 (48%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 350 GHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 409

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 410 GPARKTSFGGARYMMTIVDDYSRKVWPYFLK 440


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548751|gb|ABA91548.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 2340

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 43/91 (47%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH++E GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 648 GHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 707

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 708 GPARKTSFGGTRYMMTIVDDYSRKVWPYFLK 738


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 43/91 (47%), Positives = 59/91 (64%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH++E GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 441 GHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 500

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 501 GPARKTSFGGTRYMMTIVDDYSRKVWPYFLK 531


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 44/91 (48%), Positives = 58/91 (63%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 413 GHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 472

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP    ++ G  Y  +IVDD+SR V  + LK
Sbjct: 473 GPAHKTSFGGARYMMTIVDDYSRKVWPYFLK 503


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 44/91 (48%), Positives = 58/91 (63%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 407 GHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 466

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 467 GPARKTSFGGARYIMTIVDDYSRKVWPYFLK 497


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 44/91 (48%), Positives = 57/91 (62%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL G  I  L FC+HC+ GK  ++ F  STH +   LDYVH DLW
Sbjct: 359 GHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGTLDYVHSDLW 418

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP +  ++ G  Y  +IVDD+SR V  + LK
Sbjct: 419 GPARKTSFGGACYMMTIVDDYSRKVWPYFLK 449


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 44/91 (48%), Positives = 58/91 (63%)
 Frame = +3

Query: 3   GHISEKGLHYLHKQNLLNGDKITSLDFCDHCVLGKQHKLSFFKSTHKSSFVLDYVHYDLW 182
           GH+SE GL  L K+ LL+G  I  L FC+HC+ GK  ++ F  STH +  +LDYVH DLW
Sbjct: 476 GHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 535

Query: 183 GPDKVLTYDGNVYFFSIVDDFSRHV*VFLLK 275
           GP    ++ G  Y  +IVDD+SR V  + LK
Sbjct: 536 GPACKTSFGGARYMMTIVDDYSRKVWPYFLK 566