BLASTX nr result
ID: Catharanthus23_contig00017636
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00017636
(442 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 168 6e-40
dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea] 101 1e-19
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis] 101 1e-19
dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila] 101 1e-19
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] 99 8e-19
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica] 99 8e-19
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35] 98 1e-18
dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana] 98 1e-18
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa] 98 1e-18
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g... 97 2e-18
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana] 96 6e-18
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata] 94 2e-17
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] 84 1e-14
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca... 80 3e-13
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca... 80 3e-13
gb|EXC36325.1| DNA topoisomerase 1 [Morus notabilis] 78 1e-12
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom... 74 3e-11
gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|g... 67 2e-09
gb|ESW03467.1| hypothetical protein PHAVU_011G016600g [Phaseolus... 66 5e-09
ref|XP_004508673.1| PREDICTED: DNA topoisomerase 1-like isoform ... 59 9e-07
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 168 bits (426), Expect = 6e-40
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR
Sbjct: 1 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSSGQKGRMVPPSKPSQV
Sbjct: 61 PANGESSSGQKGRMVPPSKPSQV 83
>dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
Length = 920
Score = 101 bits (251), Expect = 1e-19
Identities = 49/83 (59%), Positives = 62/83 (74%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC TPNL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P ++ V
Sbjct: 61 PANGESSSAQKGRIQPSAETPPV 83
>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
Length = 926
Score = 101 bits (251), Expect = 1e-19
Identities = 49/83 (59%), Positives = 62/83 (74%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC TPNL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P ++ V
Sbjct: 61 PANGESSSAQKGRIQPSAETPPV 83
>dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
Length = 926
Score = 101 bits (251), Expect = 1e-19
Identities = 49/83 (59%), Positives = 62/83 (74%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC TPNL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P ++ V
Sbjct: 61 PANGESSSAQKGRIQPSAETPPV 83
>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 98.6 bits (244), Expect = 8e-19
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC T NL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGE+SS QKGR+ P +K V
Sbjct: 61 PANGENSSAQKGRIQPSAKTPPV 83
>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
Length = 927
Score = 98.6 bits (244), Expect = 8e-19
Identities = 50/83 (60%), Positives = 62/83 (74%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC TPNL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEAC-TPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 59
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P +K V
Sbjct: 60 PANGESSSAQKGRIQPSAKTPPV 82
>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC T NL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P ++ V
Sbjct: 61 PANGESSSAQKGRIQPSAETPPV 83
>dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
Length = 920
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC T NL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P ++ V
Sbjct: 61 PANGESSSAQKGRIQPSAETPPV 83
>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC T NL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S QK GQS D R
Sbjct: 1 MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P ++ V
Sbjct: 61 PANGESSSAQKGRIQPSAETPPV 83
>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 97.4 bits (241), Expect = 2e-18
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC T NL +DM++D+ P++FKR+N ASKQ+Q NSE +K+S Q+ GQS D R
Sbjct: 1 MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQRHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGE+SS QKGR+ P +K V
Sbjct: 61 PANGENSSAQKGRIQPSAKTPPV 83
>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 95.5 bits (236), Expect = 6e-18
Identities = 46/83 (55%), Positives = 60/83 (72%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC T NL +DM++D+ P++FKR+N SKQ+Q N+E +K+S QK GQS D R
Sbjct: 1 MAVEACTTTNLMEDMEDDEGPVIFKRSNPTSKQNQANAEKKKLSLQKHVGQSAVHTSDVR 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P ++ V
Sbjct: 61 PANGESSSAQKGRIQPSAETPPV 83
>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 94.0 bits (232), Expect = 2e-17
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAVEAC T NL +DM++D P++FKR+ A KQ+Q NSE +K+S QK+DGQS D R
Sbjct: 1 MAVEACTT-NLMEDMEDDGGPVIFKRSKPAPKQNQANSEKKKLSLQKQDGQSAVHTSDVR 59
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
PANGESSS QKGR+ P +K V
Sbjct: 60 PANGESSSAQKGRIQPSAKTPPV 82
>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 84.3 bits (207), Expect = 1e-14
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAV+AC + D++DEDDEP+VFKR+N+ SK +Q NS+T+K SSQ+ DGQS RQ+ D
Sbjct: 1 MAVQACVKEKMMDEIDEDDEPLVFKRSNATSKHNQLNSDTKK-SSQRYDGQSGRQVSDVP 59
Query: 373 PANGESSSGQKGR 411
NG+SSS KG+
Sbjct: 60 STNGQSSSASKGK 72
>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
isoform 3 [Theobroma cacao]
Length = 836
Score = 80.1 bits (196), Expect = 3e-13
Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 193 MAVEACPTPNLRD-DMDEDDEPIVFKRNN-SASKQSQTNSETRKVSSQKRDGQSVRQIYD 366
MAVEA P ++ D D D+DD P+VFKRNN S+SKQ+Q NSE +K SSQ+ DGQS RQ+ D
Sbjct: 1 MAVEA-PAKHVYDFDDDDDDGPVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSD 59
Query: 367 SRPANGESSSGQKGRMVPPSKPSQV 441
R NG+SS+ K + + SK V
Sbjct: 60 VRSPNGQSSNAPKNKSISSSKSPPV 84
>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao]
Length = 904
Score = 80.1 bits (196), Expect = 3e-13
Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 193 MAVEACPTPNLRD-DMDEDDEPIVFKRNN-SASKQSQTNSETRKVSSQKRDGQSVRQIYD 366
MAVEA P ++ D D D+DD P+VFKRNN S+SKQ+Q NSE +K SSQ+ DGQS RQ+ D
Sbjct: 1 MAVEA-PAKHVYDFDDDDDDGPVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSD 59
Query: 367 SRPANGESSSGQKGRMVPPSKPSQV 441
R NG+SS+ K + + SK V
Sbjct: 60 VRSPNGQSSNAPKNKSISSSKSPPV 84
>gb|EXC36325.1| DNA topoisomerase 1 [Morus notabilis]
Length = 908
Score = 77.8 bits (190), Expect = 1e-12
Identities = 43/83 (51%), Positives = 55/83 (66%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 372
MAV+A +L DD DEDD P++ KR N+ASK +Q +SE +K SQ+ DGQS RQI D
Sbjct: 1 MAVQAPAKQSLFDDFDEDDGPLIVKRKNTASKPNQLSSELKKPLSQRLDGQSGRQISDGV 60
Query: 373 PANGESSSGQKGRMVPPSKPSQV 441
NG +S QKG++V SK S V
Sbjct: 61 FLNGINSYSQKGKVVQSSKASPV 83
>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
tuberosum]
Length = 905
Score = 73.6 bits (179), Expect = 3e-11
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDE-PIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDS 369
MAVEA NL +D+D+DD+ P+VFKR+++ SKQ+Q+NS SSQK+DG+S RQ+ D
Sbjct: 1 MAVEAFAKTNLMEDIDDDDDMPLVFKRSSTTSKQNQSNS-----SSQKQDGRSGRQVPDV 55
Query: 370 RPANGESSSGQKGRMVPPSKPS 435
R NG+SSS K + SK S
Sbjct: 56 RSPNGQSSSTHKVKTAASSKAS 77
>gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|gb|AAK69776.1|
topoisomerase I [Nicotiana tabacum]
Length = 852
Score = 67.4 bits (163), Expect = 2e-09
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Frame = +1
Query: 193 MAVEACPTPNLRDDMDEDDE--PIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYD 366
MAVEA L ++D+DD+ P+VFKR+++ SKQ+Q+NS SSQK+DG+S RQ D
Sbjct: 1 MAVEAFSKTKLMAEVDDDDDDMPLVFKRSSTTSKQNQSNS-----SSQKQDGRSGRQASD 55
Query: 367 SRPANGESSSGQKGRMVPPSKPSQ 438
R NG+SSS +K + SK S+
Sbjct: 56 VRSPNGQSSSAEKVKAGTSSKASR 79
>gb|ESW03467.1| hypothetical protein PHAVU_011G016600g [Phaseolus vulgaris]
gi|561004474|gb|ESW03468.1| hypothetical protein
PHAVU_011G016600g [Phaseolus vulgaris]
Length = 924
Score = 65.9 bits (159), Expect = 5e-09
Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +1
Query: 217 PNLRDDMDEDDE-PIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSRPANGESS 393
PNL D D+DD+ PI++KR ++K++Q+ SE RK SS +GQS RQI ++ +NG++S
Sbjct: 40 PNLPHDFDDDDDAPIIYKR--LSAKKNQSLSEARKSSSHIHEGQSYRQIPNASSSNGQTS 97
Query: 394 SGQKGRMVPPSKPS 435
S QKG P KPS
Sbjct: 98 SMQKGNTAPSLKPS 111
>ref|XP_004508673.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum]
Length = 795
Score = 58.5 bits (140), Expect = 9e-07
Identities = 29/70 (41%), Positives = 46/70 (65%)
Frame = +1
Query: 232 DMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSRPANGESSSGQKGR 411
+ D++D PI FKR+ S SK ++ +S+ RK +S DGQS ++ D +NG+ SS Q G+
Sbjct: 4 EFDDEDRPITFKRS-SMSKSNELHSKRRKSTSHCHDGQSYKKTSDVLSSNGQCSSSQNGK 62
Query: 412 MVPPSKPSQV 441
+VP +K + V
Sbjct: 63 VVPSAKATSV 72